genome.fa.s25.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  178  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51906616--51906658	22	2.0	22	85	0	59	55	16	27	0	1.41
51922396--51922467	27	2.7	27	84	0	108	19	34	33	12	1.89
51923733--51923796	27	2.4	27	86	0	83	10	34	32	21	1.89
51928854--51928906	23	2.3	23	93	0	97	28	26	20	24	1.99
51932714--51932832	52	2.2	52	91	2	184	36	13	22	26	1.92
51932795--51932941	37	4.0	37	92	1	235	36	15	22	25	1.93
51935202--51935553	123	2.9	123	90	3	541	30	23	18	27	1.98
51935202--51935553	41	8.6	41	90	3	487	30	23	18	27	1.98
51936647--51936671	13	1.9	13	100	0	50	68	24	0	8	1.16
51942526--51942875	41	8.6	41	90	4	523	30	23	18	27	1.98
51942526--51942875	122	2.9	122	91	5	532	30	23	18	27	1.98
51943970--51943994	13	1.9	13	100	0	50	68	24	0	8	1.16
51950458--51950489	4	8.0	4	100	0	64	0	25	0	75	0.81
51967160--51967193	16	2.1	16	88	0	50	50	14	17	17	1.79
51969991--51970031	21	2.0	21	90	0	64	29	21	29	19	1.98
51971937--51971970	16	2.1	16	88	0	50	50	14	17	17	1.79
51973320--51973371	25	2.1	25	85	0	68	28	5	9	55	1.55
51973799--51973849	6	9.0	6	77	12	54	33	0	0	66	0.92
51973793--51973841	23	2.2	23	92	3	82	38	0	0	61	0.96
51973978--51974224	84	2.9	82	77	10	239	31	9	10	48	1.70
51974007--51974223	86	2.6	85	82	4	251	30	10	10	49	1.69
51976419--51976459	11	3.7	11	80	0	55	29	17	0	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51977167--51977207	18	2.2	18	87	12	57	26	2	9	60	1.40
51978015--51978065	24	2.1	24	81	0	57	62	3	0	33	1.13
51983713--51983758	24	1.9	24	100	0	92	45	6	0	47	1.28
51985522--51985566	3	15.0	3	100	0	90	33	33	0	33	1.58
51988536--51988571	17	2.1	18	89	5	56	69	5	2	22	1.22
51989167--51989234	34	2.0	34	91	2	111	54	10	4	30	1.54
51989269--51989322	17	3.5	17	69	23	55	61	5	5	27	1.41
51989269--51989329	29	2.1	29	93	0	104	59	4	4	31	1.40
51994676--51994739	31	2.1	30	91	2	101	35	4	3	56	1.36
52002274--52002335	30	2.0	30	84	9	81	48	3	3	45	1.34
52011594--52011641	24	2.0	25	83	4	62	64	8	0	27	1.22
52019438--52019478	21	2.0	21	95	0	73	39	17	19	24	1.92
52019923--52019977	21	2.6	21	88	0	83	23	9	38	29	1.85
52026854--52026879	11	2.4	11	100	0	52	57	7	26	7	1.54
52027522--52027561	16	2.6	16	80	4	55	42	0	0	57	0.98
52027900--52027969	34	2.1	34	100	0	140	38	8	22	30	1.84
52029628--52029663	17	2.2	17	90	5	56	13	30	0	55	1.39
52029627--52029664	16	2.4	16	82	8	51	15	31	0	52	1.43
52036631--52036988	104	3.6	103	90	6	542	18	20	31	29	1.97
52036906--52036957	26	2.0	26	96	0	95	13	23	34	28	1.92
52044275--52044325	26	2.0	26	96	0	93	11	23	35	29	1.90
52044197--52044557	103	3.6	103	91	6	569	18	20	31	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52044378--52044444	26	2.6	26	90	4	100	11	20	38	28	1.88
52045762--52046003	50	4.7	50	85	4	288	26	24	28	20	1.99
52045762--52046011	100	2.4	103	86	6	355	25	24	28	21	1.99
52062219--52062255	3	12.3	3	100	0	74	67	0	0	32	0.91
52063936--52063973	12	3.2	12	81	11	51	36	7	7	47	1.62
52069576--52069608	12	2.6	13	90	4	50	33	6	6	54	1.50
52072540--52072580	20	2.0	20	85	9	55	56	2	0	41	1.13
52073365--52073394	2	15.0	2	100	0	60	0	50	0	50	1.00
52075885--52075924	18	2.2	18	90	0	62	17	15	12	55	1.70
52076530--52076700	84	2.0	84	97	0	324	32	16	15	35	1.91
52087589--52087653	31	2.1	31	100	0	130	32	12	12	43	1.79
52091862--52091901	5	7.6	5	83	10	53	40	0	0	60	0.97
52091867--52091896	8	3.8	8	90	0	51	40	0	0	60	0.97
52091861--52091901	16	2.6	16	92	0	73	39	0	0	60	0.96
52092592--52092620	14	2.1	14	100	0	58	34	0	0	65	0.93
52092967--52093047	25	3.3	24	85	1	92	16	25	20	37	1.93
52092967--52093091	22	5.3	24	79	8	116	15	25	20	38	1.92
52094438--52094487	26	1.9	26	91	0	82	18	24	34	24	1.96
52094467--52094608	42	3.4	41	77	15	139	21	17	26	35	1.95
52103715--52103744	15	1.9	16	93	6	53	83	3	0	13	0.77
52104090--52104122	17	1.9	17	88	11	50	48	6	6	39	1.53
52107185--52107229	16	2.8	16	79	0	54	66	2	2	28	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52116280--52116313	17	1.9	18	88	5	52	35	0	0	64	0.94
52116726--52116769	21	2.1	21	82	0	52	54	2	0	43	1.12
52121127--52121241	58	2.0	57	94	1	203	45	11	7	35	1.69
52122120--52122214	38	2.5	38	87	0	136	44	18	10	26	1.82
52122741--52122780	17	2.2	19	86	8	57	70	0	12	17	1.18
52127387--52127418	6	5.3	6	100	0	64	15	15	37	31	1.89
52127865--52127909	16	2.7	17	82	6	56	40	0	0	60	0.97
52127893--52127991	11	9.5	11	73	19	79	41	1	0	57	1.05
52127876--52127966	41	2.3	39	85	9	132	37	0	0	62	0.95
52127904--52128002	29	3.3	29	85	2	126	41	1	0	57	1.05
52127943--52127980	18	2.1	19	95	5	69	47	0	0	52	1.00
52128608--52128660	19	2.7	20	77	11	56	54	1	1	41	1.22
52129964--52130003	21	1.9	21	84	0	53	32	5	10	52	1.56
52133333--52133363	14	2.1	15	94	5	55	12	9	0	77	0.99
52139947--52140040	48	2.0	48	87	8	138	40	27	12	19	1.88
52142461--52142554	48	2.0	48	87	8	138	40	27	12	19	1.88
52152850--52152897	6	8.0	6	83	0	60	27	14	37	20	1.92
52157754--52157815	31	2.0	31	100	0	124	25	16	29	29	1.96
52159062--52159122	32	1.9	32	86	6	88	24	13	24	37	1.91
52161124--52161206	36	2.3	36	80	0	85	21	18	34	25	1.96
52162970--52163021	27	1.9	27	96	0	95	15	25	36	23	1.93
52163112--52163140	14	2.0	15	93	6	51	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52163219--52163301	39	2.0	42	82	13	102	19	0	16	63	1.30
52166651--52166729	33	2.4	33	87	4	115	26	16	37	18	1.92
52169452--52169510	8	7.2	8	73	17	50	1	35	0	62	1.05
52169464--52169512	3	17.0	3	76	23	52	0	32	0	67	0.91
52183199--52183338	71	2.0	71	100	0	280	30	27	4	37	1.76
52188610--52188661	21	2.5	21	93	6	88	30	5	34	28	1.81
52190533--52190559	8	3.4	8	100	0	54	11	0	11	77	0.99
52191038--52191077	18	2.1	20	86	9	57	45	0	0	55	0.99
52195762--52195805	21	2.0	21	82	8	52	31	18	29	20	1.96
52199556--52199611	19	2.8	20	70	20	55	39	5	1	53	1.34
52203955--52204005	27	2.0	26	85	11	70	64	0	0	35	0.94
52206722--52206764	18	2.4	18	80	0	50	65	20	0	13	1.27
52212756--52212853	50	2.0	49	86	7	137	33	11	11	43	1.76
52214942--52215073	33	3.7	33	73	18	113	20	22	27	29	1.99
52215883--52216053	85	2.0	85	97	0	324	28	18	18	35	1.94
52217792--52217970	51	3.5	50	84	5	234	30	26	18	24	1.98
52217784--52217998	101	2.1	100	82	3	270	28	27	18	25	1.98
52220538--52220596	27	2.2	27	93	6	102	30	0	0	69	0.89
52220541--52220590	8	5.9	8	77	13	55	20	0	0	80	0.72
52220577--52220621	22	2.1	22	84	12	58	37	0	4	57	1.19
52220545--52220603	27	2.2	27	87	6	84	27	0	0	72	0.84
52220556--52220613	27	2.2	27	81	6	66	27	0	3	68	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52240355--52240458	52	2.0	52	90	0	163	37	7	10	44	1.68
52240780--52240848	36	1.9	36	82	5	86	21	30	2	44	1.67
52255159--52255189	3	10.3	3	100	0	62	0	32	0	67	0.91
52258232--52258303	36	2.0	36	94	0	126	34	20	9	34	1.86
52259154--52259282	20	6.8	19	68	14	70	62	3	3	30	1.31
52259154--52259261	9	11.6	9	68	17	51	62	3	3	29	1.29
52259420--52259450	6	5.0	6	96	4	53	80	0	3	16	0.83
52260815--52260871	26	2.2	26	87	6	80	21	0	3	75	0.95
52260814--52260870	17	3.4	17	87	7	71	21	0	3	75	0.95
52261046--52261097	20	2.5	21	79	14	63	30	3	3	61	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196