genome.fa.s25.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  70  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20007791--20008006	77	2.8	77	88	3	319	26	9	10	53	1.66
20009551--20009611	30	2.0	30	87	0	86	39	6	11	42	1.67
20009914--20009966	19	2.9	18	86	8	72	28	1	0	69	0.99
20009921--20009973	19	2.8	19	85	0	70	30	1	0	67	1.01
20009933--20009994	31	2.0	31	84	6	81	29	3	3	64	1.25
20013165--20013336	61	2.8	61	79	12	176	55	2	0	40	1.19
20013264--20013339	40	1.9	40	86	5	109	56	2	1	39	1.21
20014936--20014982	20	2.3	20	88	0	67	29	8	2	59	1.39
20019515--20019591	28	2.5	30	76	14	70	75	9	7	7	1.20
20019511--20019603	31	3.0	31	81	6	89	73	10	7	8	1.26
20019999--20020030	6	5.7	6	85	14	50	75	0	12	12	1.06
20019982--20020038	29	2.0	28	86	3	78	68	0	15	15	1.22
20019982--20020038	22	2.6	23	86	8	73	68	0	15	15	1.22
20019988--20020030	10	4.1	10	82	11	50	72	0	13	13	1.13
20019999--20020038	12	3.5	11	86	13	55	70	0	15	15	1.18
20028200--20028337	44	3.2	44	64	17	106	26	20	25	28	1.99
20028102--20028452	87	4.0	87	88	1	488	31	21	22	24	1.99
20028545--20028862	44	7.3	44	71	10	183	30	22	23	22	1.99
20030657--20030703	20	2.3	20	88	0	67	29	8	2	59	1.39
20032678--20032712	16	2.2	16	94	0	61	65	17	0	17	1.27
20041218--20041428	58	3.6	58	70	12	198	24	26	13	36	1.92
20041128--20041429	87	3.5	87	76	6	245	23	26	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20041128--20041407	116	2.4	116	86	1	364	23	26	13	36	1.92
20041114--20041349	29	8.1	29	78	6	176	22	26	14	36	1.93
20041218--20041428	29	7.3	29	79	7	146	24	26	13	36	1.92
20049346--20049465	22	5.5	22	68	11	66	24	11	24	40	1.88
20049353--20049465	44	2.6	44	84	2	147	23	12	24	38	1.90
20066479--20066515	16	2.3	16	85	0	56	40	5	29	24	1.77
20066497--20066590	44	2.1	44	84	11	120	34	3	24	38	1.72
20066743--20066876	18	7.9	18	67	17	81	57	2	0	38	1.19
20067243--20067274	14	2.3	14	100	0	64	6	18	0	75	1.01
20079478--20079514	18	2.1	18	89	0	56	48	16	10	24	1.77
20079771--20079829	17	3.4	17	71	17	57	35	3	3	57	1.32
20079960--20079997	18	2.1	18	85	9	51	36	5	0	57	1.21
20080691--20080747	28	2.0	30	86	6	82	52	10	3	33	1.53
20080695--20080757	28	2.2	28	76	20	67	53	9	4	31	1.54
20081334--20081430	3	32.3	3	100	0	194	67	0	32	0	0.91
20082457--20082494	18	2.1	18	90	0	58	39	13	26	21	1.89
20097453--20097495	17	2.4	18	84	3	61	55	11	11	20	1.66
20100331--20100384	21	2.7	21	88	5	76	40	16	27	14	1.88
20101721--20101783	24	2.6	25	82	5	67	26	14	31	26	1.95
20102218--20102323	30	3.6	30	96	2	196	35	15	20	28	1.93
20105826--20105867	3	14.3	3	85	5	59	73	26	0	0	0.83
20105829--20105865	9	4.1	9	92	0	65	75	24	0	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20107915--20107981	34	1.9	35	84	3	91	64	7	1	26	1.29
20110079--20110327	50	4.8	50	85	4	284	20	29	24	26	1.99
20110078--20110327	100	2.4	104	88	6	357	20	29	24	26	1.99
20110422--20110453	13	2.5	13	94	0	55	56	12	0	31	1.37
20110665--20110722	30	1.9	30	89	0	89	31	24	3	41	1.71
20117656--20117901	49	4.8	49	83	6	278	20	29	23	26	1.99
20117655--20117901	99	2.4	100	86	8	329	21	29	23	26	1.99
20118235--20118291	29	1.9	30	85	3	80	31	24	1	42	1.65
20162374--20162427	23	2.3	23	80	0	63	42	18	16	22	1.89
20165253--20165306	28	1.9	28	88	0	81	35	25	11	27	1.90
20167219--20167253	5	7.0	5	100	0	70	40	20	0	40	1.52
20171843--20172614	256	3.0	256	99	0	1517	34	15	23	26	1.94
20178244--20178290	23	2.0	23	95	0	85	31	23	0	44	1.54
20178528--20178561	18	1.9	17	88	5	50	47	2	0	50	1.16
20180757--20180811	25	2.2	25	90	0	83	29	23	18	29	1.98
20181433--20181463	12	2.6	12	94	0	53	54	0	12	32	1.38
20182501--20182539	20	2.0	20	94	0	69	10	20	23	46	1.81
20182508--20182594	20	4.3	20	76	5	77	13	25	20	40	1.89
20182508--20182594	40	2.2	40	80	0	102	13	25	20	40	1.89
20182749--20182802	24	2.2	24	90	0	81	40	9	14	35	1.78
20194342--20194369	14	2.0	14	100	0	56	50	0	14	35	1.43
20197801--20197842	21	1.9	23	85	9	61	19	9	19	52	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20203704--20203736	12	2.8	12	90	9	50	33	0	0	66	0.92
20221946--20221995	8	5.7	9	79	13	50	68	2	2	28	1.12
20221946--20221995	18	2.8	18	78	3	57	68	2	2	28	1.12
20222581--20222605	13	1.9	13	100	0	50	12	40	8	40	1.72
20224155--20224193	20	2.0	20	94	0	69	48	0	2	48	1.15
20224212--20224297	33	2.7	32	78	12	95	46	16	9	27	1.77
20224291--20224330	20	2.1	19	95	4	71	45	15	10	30	1.78
20224611--20224650	20	2.0	20	100	0	80	30	10	15	45	1.78
20224597--20224660	34	1.9	32	84	12	85	35	7	14	42	1.74
20224641--20224728	33	2.7	32	76	13	99	26	9	18	46	1.78
20224743--20224788	22	2.1	22	95	0	83	47	4	0	47	1.21
20226041--20226101	32	1.9	32	96	0	113	50	18	3	27	1.62
20226041--20226114	32	2.5	30	87	10	100	51	18	2	27	1.60
20226042--20226128	27	3.0	27	83	11	77	51	18	2	27	1.58
20229938--20230105	51	3.3	51	93	0	273	34	14	23	27	1.94
20232187--20232304	59	2.0	59	94	0	209	39	8	15	36	1.78
20234281--20234317	17	2.2	17	95	0	65	51	10	0	37	1.37
20235029--20235092	30	2.1	30	97	0	119	39	10	17	32	1.84
20236543--20236608	33	2.0	33	100	0	132	33	6	27	33	1.81
20238859--20238891	10	3.2	10	95	4	57	75	0	3	21	0.93
20238859--20238891	15	2.1	16	94	5	59	75	0	3	21	0.93
20244303--20244372	33	2.1	33	100	0	140	34	14	8	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20247702--20247785	20	4.2	20	70	11	64	36	21	30	10	1.88
20247708--20247783	40	1.9	40	81	10	93	39	22	26	11	1.88
20247705--20247852	61	2.4	61	80	3	174	38	19	29	12	1.89
20254765--20254881	59	1.9	59	84	5	153	44	0	4	50	1.27
20254816--20254853	12	3.2	12	82	17	53	50	0	0	50	1.00
20256748--20256790	21	2.0	22	90	4	70	67	6	0	25	1.15
20264009--20264061	22	2.4	21	75	12	52	18	28	18	33	1.95
20269475--20269501	8	3.4	8	100	0	54	40	11	0	48	1.39
20286890--20286916	4	6.8	4	100	0	54	25	25	0	48	1.52
20290713--20290760	20	2.4	20	96	0	87	62	14	12	10	1.54
20292869--20292923	9	6.3	9	81	8	60	80	3	16	0	0.86
20292872--20292922	12	4.4	12	80	9	52	78	3	17	0	0.90
20292893--20292929	12	2.8	13	88	12	58	83	8	8	0	0.80
20292878--20292929	25	2.0	26	85	3	70	80	5	13	0	0.88
20292878--20292929	13	4.2	12	82	7	59	80	5	13	0	0.88
20293366--20293567	58	3.4	60	87	8	288	50	13	24	10	1.74
20294553--20294771	43	5.1	43	76	10	234	23	15	26	34	1.94
20294553--20294746	42	4.6	43	79	10	211	23	17	25	34	1.96
20294554--20294789	85	2.8	85	93	0	391	22	16	26	35	1.94
20317595--20318079	99	4.9	99	82	2	569	22	21	24	32	1.98
20317640--20318067	50	8.6	50	72	5	231	22	20	24	32	1.98
20317587--20318065	149	3.2	149	72	7	385	22	21	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20337352--20337393	19	2.2	20	87	8	61	73	0	7	19	1.05
20348696--20348746	22	2.3	22	86	6	68	13	33	3	49	1.61
20350705--20350892	51	3.7	50	82	3	207	29	26	17	26	1.97
20356315--20356749	102	4.3	102	95	0	762	20	19	28	32	1.97
20363071--20363108	5	7.4	5	85	14	51	21	0	0	78	0.74
20366613--20366687	20	3.8	20	71	7	62	36	14	36	13	1.85
20366602--20366728	40	3.2	40	89	1	184	35	16	33	14	1.90
20366754--20366839	40	2.2	40	82	0	100	40	17	25	16	1.90
20371552--20371830	54	5.2	53	77	9	260	21	17	19	41	1.90
20371553--20371830	27	10.3	27	77	8	221	20	17	19	42	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196