genome.fa.s25.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  108  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32534217--32534276	10	6.1	10	76	9	52	35	0	3	61	1.12
32534226--32534277	9	5.6	9	80	8	50	34	0	3	61	1.14
32537416--32537475	17	3.4	17	73	13	50	50	1	1	46	1.21
32539979--32540008	14	2.1	14	93	0	51	33	0	0	66	0.92
32541967--32542080	34	3.4	34	86	1	131	35	13	12	38	1.82
32541949--32542099	67	2.2	67	82	3	178	33	13	12	40	1.82
32541990--32542098	34	3.2	33	86	2	137	33	14	11	39	1.83
32542176--32542352	45	3.9	44	73	9	158	26	14	22	36	1.93
32543253--32543286	17	2.0	17	88	11	52	52	14	5	26	1.64
32546993--32547076	32	2.6	32	81	5	107	27	2	19	51	1.59
32547966--32548018	26	2.0	26	100	0	106	50	11	15	22	1.75
32548510--32548547	19	2.0	19	94	0	67	52	18	5	23	1.65
32549051--32549115	10	6.8	10	72	15	57	66	0	0	33	0.92
32549048--32549114	26	2.4	28	78	16	77	67	0	0	32	0.91
32549191--32549252	9	6.6	9	76	12	54	67	3	4	24	1.25
32549191--32549252	28	2.2	28	94	2	106	67	3	4	24	1.25
32549721--32549756	17	2.1	18	94	5	65	47	0	0	52	1.00
32554012--32554118	34	3.1	34	83	0	133	33	10	12	43	1.76
32555546--32555583	20	2.0	20	84	5	51	31	2	5	60	1.33
32557591--32557663	36	2.0	36	86	0	101	28	12	23	35	1.91
32563460--32563531	35	2.0	36	89	2	110	27	9	25	37	1.87
32563947--32564043	40	2.4	41	78	11	112	39	18	21	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32564060--32564253	41	4.7	41	82	0	217	25	21	23	29	1.99
32564700--32564767	21	3.2	21	74	14	68	25	0	35	39	1.56
32564782--32564921	71	2.0	71	92	1	237	30	0	22	47	1.52
32565234--32565264	9	3.4	9	90	0	53	25	12	22	38	1.90
32565317--32565352	18	2.0	18	88	0	54	41	13	19	25	1.88
32565724--32565784	19	3.2	18	73	13	52	22	36	0	40	1.55
32566602--32566635	16	2.1	16	88	5	50	73	0	2	23	0.97
32567065--32567350	147	2.0	142	85	6	387	40	14	13	32	1.84
32571596--32571798	43	4.7	43	83	1	239	21	18	30	30	1.97
32574758--32575029	68	4.0	68	85	1	330	36	17	22	24	1.95
32591645--32591761	25	4.7	25	73	11	89	31	20	20	27	1.97
32591705--32591786	25	3.3	24	77	11	85	34	17	23	25	1.96
32594083--32594151	32	2.2	32	81	5	77	21	10	13	55	1.67
32597226--32597966	369	2.0	369	97	0	1383	26	19	15	38	1.92
32600482--32600528	24	1.9	25	87	12	71	68	2	10	19	1.30
32613143--32613197	28	2.0	28	96	0	101	52	16	7	23	1.68
32616003--32616116	56	2.0	56	93	0	192	26	21	14	37	1.92
32618111--32618144	18	1.9	18	88	5	52	55	5	5	32	1.48
32635264--32635297	8	4.0	8	88	11	50	47	0	0	52	1.00
32636152--32636204	15	3.6	14	75	7	52	67	0	1	30	1.01
32636183--32636252	19	3.6	18	77	21	63	65	1	1	31	1.10
32636159--32636252	18	4.8	19	71	17	61	63	1	1	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32637798--32637831	7	4.9	7	100	0	68	73	0	0	26	0.83
32638842--32638894	11	4.9	11	79	4	63	67	15	9	7	1.39
32638842--32638894	21	2.5	22	84	6	72	67	15	9	7	1.39
32638825--32638891	32	2.1	33	91	2	109	68	14	7	8	1.37
32639536--32639590	18	3.1	17	82	12	65	41	1	0	56	1.10
32639505--32639605	49	2.1	48	81	9	116	36	0	0	61	1.09
32639539--32639592	19	2.8	18	78	10	63	42	1	0	55	1.10
32639582--32639625	21	2.0	21	82	4	52	47	0	4	47	1.22
32643267--32643388	58	2.1	58	92	0	199	38	14	18	27	1.90
32646891--32646938	14	3.7	12	78	15	51	50	14	4	31	1.62
32647072--32647106	16	2.2	16	100	0	70	40	25	11	22	1.88
32652381--32652485	22	4.7	22	88	5	149	42	37	2	17	1.64
32652381--32652491	45	2.5	45	89	2	179	42	36	3	17	1.66
32653865--32654083	40	5.6	39	82	11	234	24	27	22	25	2.00
32653865--32654084	117	1.9	117	83	7	286	25	27	22	25	2.00
32661821--32662042	40	5.6	40	81	6	229	26	27	20	25	1.99
32667385--32667554	23	7.6	23	78	11	149	19	17	22	40	1.91
32667382--32667554	46	3.9	47	78	14	186	19	16	23	41	1.90
32668624--32668705	41	2.0	41	100	0	164	51	7	14	26	1.69
32671977--32672165	91	2.1	91	85	4	247	35	26	13	24	1.92
32675435--32675487	21	2.6	21	90	3	81	37	7	15	39	1.75
32678876--32678927	20	2.5	21	87	6	70	44	25	23	7	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32685667--32685748	28	2.9	28	82	7	112	29	19	23	28	1.98
32687789--32688034	27	9.1	27	73	9	144	34	19	28	18	1.95
32687789--32688034	81	3.0	80	73	10	223	34	19	28	18	1.95
32687794--32688034	54	4.5	54	77	6	200	34	19	28	18	1.95
32694116--32694211	46	2.1	46	98	0	183	39	10	18	31	1.85
32697544--32697590	2	23.5	2	100	0	94	51	0	48	0	1.00
32699827--32699878	24	2.2	24	89	0	77	55	9	1	32	1.43
32701797--32701848	24	2.2	24	89	0	77	55	9	1	32	1.43
32724400--32724496	42	2.3	42	83	3	115	21	27	27	22	1.99
32724428--32724685	116	2.2	116	88	0	372	28	24	22	24	1.99
32726611--32726649	20	2.0	20	85	10	53	25	10	2	61	1.41
32742192--32742223	10	3.2	10	100	0	64	62	0	28	9	1.26
32742321--32742512	51	3.8	51	76	6	192	25	15	28	30	1.96
32742520--32742618	46	2.2	44	82	8	112	24	18	24	33	1.97
32746153--32746219	32	2.1	32	91	0	107	44	7	28	19	1.77
32750994--32751069	26	2.9	26	80	0	80	28	15	13	42	1.85
32754912--32754969	25	2.3	25	87	0	80	25	24	20	29	1.99
32755026--32755083	27	2.1	27	84	6	73	46	0	24	29	1.53
32771040--32771104	21	3.3	20	75	23	59	41	18	1	38	1.60
32772442--32772533	45	2.0	45	89	0	139	32	21	18	27	1.97
32772539--32772725	51	3.7	50	75	8	173	32	26	16	24	1.96
32772537--32772721	101	1.8	101	87	3	273	32	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32777760--32777868	54	2.0	54	98	0	209	29	22	9	38	1.85
32780559--32780599	10	4.4	9	88	8	57	19	0	2	78	0.87
32784111--32784277	45	3.7	45	83	3	176	39	15	20	24	1.91
32784110--32784284	90	1.9	90	81	4	210	39	16	20	24	1.92
32784069--32784283	45	4.8	44	79	8	168	40	17	19	22	1.91
32787953--32788001	22	2.2	22	81	3	53	6	12	2	79	0.99
32788674--32788703	12	2.5	12	94	0	51	30	0	6	63	1.20
32789181--32789213	4	8.2	4	100	0	66	24	0	0	75	0.80
32789256--32789286	15	2.1	15	93	0	53	19	9	6	64	1.45
32789341--32789662	109	3.0	108	86	1	432	31	15	16	36	1.90
32792877--32792927	9	5.4	9	80	19	52	86	9	0	3	0.70
32792869--32792925	7	7.9	7	79	16	55	84	10	0	5	0.77
32794546--32794872	46	7.1	46	89	1	476	27	17	24	30	1.97
32794546--32796178	138	11.8	138	79	7	703	27	16	25	30	1.97
32794849--32794895	23	2.0	23	91	0	76	23	14	29	31	1.95
32794711--32795017	161	1.9	161	89	0	470	26	16	25	31	1.96
32794806--32794941	69	2.0	69	92	0	227	26	15	27	30	1.96
32794772--32794987	115	1.9	115	91	0	351	27	15	26	30	1.96
32794665--32795079	207	2.0	207	89	0	641	27	16	25	31	1.97
32794872--32795138	46	5.8	46	87	0	390	28	15	25	30	1.96
32795111--32795469	44	8.2	43	68	17	154	30	16	25	27	1.97
32795117--32795534	132	3.2	131	90	1	665	31	16	25	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32795513--32796178	46	14.5	46	88	1	976	25	15	26	31	1.96
32796173--32796872	132	5.3	132	86	1	920	32	17	23	27	1.97
32796534--32796859	44	7.4	43	66	15	139	30	16	23	29	1.96
32798923--32799244	109	3.0	108	88	2	461	31	16	16	35	1.91
32800902--32800952	20	2.5	20	81	12	68	52	0	25	21	1.47
32804946--32804982	6	6.2	6	100	0	74	16	16	0	67	1.23
32805176--32805293	58	2.0	58	100	0	236	38	11	10	39	1.76
32806202--32806250	21	2.4	20	78	15	55	63	2	2	32	1.17
32806694--32807041	175	2.0	175	97	0	660	40	14	12	31	1.84
32807102--32807178	32	2.3	34	79	16	90	48	0	2	49	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196