genome.fa.s25.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  176  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51308028--51308295	35	8.0	34	84	7	325	18	22	18	40	1.91
51308023--51308285	67	3.9	65	88	6	323	18	23	18	40	1.91
51308023--51308285	102	2.6	102	92	2	417	18	23	18	40	1.91
51311094--51311138	20	2.1	22	84	12	58	13	11	8	66	1.44
51314552--51314585	10	3.4	10	91	0	50	50	0	0	50	1.00
51315726--51315790	21	3.1	21	75	0	76	20	23	20	36	1.95
51323103--51323152	5	10.0	5	78	8	57	54	2	0	44	1.11
51323103--51323154	16	3.4	16	82	12	65	53	1	0	44	1.11
51325628--51325656	11	2.5	12	94	5	51	20	0	0	79	0.74
51325717--51325744	3	9.3	3	100	0	56	35	0	0	64	0.94
51332036--51332095	29	2.0	30	87	3	86	40	15	5	40	1.68
51332041--51332106	29	2.2	29	83	2	78	43	13	4	37	1.65
51340302--51340352	3	17.0	3	100	0	102	33	0	0	66	0.92
51340519--51340598	9	9.0	9	72	14	51	32	3	1	62	1.21
51345060--51345097	6	6.3	6	93	0	67	36	0	13	50	1.42
51345397--51345450	26	2.1	26	85	0	72	48	7	12	31	1.69
51347041--51347235	40	4.7	41	75	10	164	22	21	24	32	1.98
51346898--51347279	133	3.0	129	85	5	502	22	20	23	34	1.97
51347044--51347201	44	3.7	43	77	9	137	22	21	24	31	1.98
51347269--51347966	132	5.3	132	94	0	1168	27	24	19	29	1.98
51347686--51347878	44	4.4	43	67	11	122	25	24	20	29	1.99
51347256--51347938	88	7.8	88	66	12	260	27	24	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51349452--51349477	2	13.0	2	100	0	52	50	0	50	0	1.00
51377750--51377809	23	2.8	21	69	18	52	61	3	5	30	1.33
51379106--51379431	132	2.5	132	92	0	537	25	27	18	28	1.98
51379501--51380066	89	6.4	89	89	0	765	22	25	24	27	2.00
51379585--51380066	45	10.8	44	65	15	206	22	25	24	27	2.00
51380183--51380293	55	2.0	55	96	0	204	22	17	17	43	1.88
51384547--51384581	18	1.9	18	88	0	52	28	5	5	60	1.43
51387298--51387349	20	2.6	21	72	9	54	28	1	7	61	1.34
51393668--51393782	22	5.6	23	66	27	71	63	0	2	33	1.08
51393668--51393781	40	2.9	40	93	2	196	63	0	2	34	1.09
51393643--51393823	89	2.0	88	84	9	233	62	0	2	34	1.07
51393709--51393758	15	3.3	15	75	5	55	68	0	2	30	1.01
51393700--51393812	49	2.3	48	82	14	140	67	0	1	30	1.01
51393728--51393759	16	2.0	16	93	0	55	71	0	0	28	0.86
51393744--51393792	10	4.6	10	78	14	53	63	0	2	34	1.06
51393661--51393830	40	4.3	38	81	15	179	64	0	2	33	1.07
51393776--51393809	17	2.0	17	94	0	59	67	0	0	32	0.91
51393766--51393836	30	2.5	29	84	11	94	63	0	1	35	1.03
51395776--51395800	13	1.9	13	100	0	50	32	0	12	56	1.36
51404818--51404868	24	2.1	25	85	3	68	25	21	5	47	1.73
51407590--51407641	1	52.0	1	80	0	59	90	7	1	0	0.53
51407590--51407641	11	4.5	11	88	9	77	90	7	1	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51407590--51407639	20	2.5	20	87	12	75	90	8	2	0	0.54
51407590--51407641	24	2.2	24	92	0	86	90	7	1	0	0.53
51408080--51408160	6	13.5	6	77	12	69	80	0	13	6	0.89
51408069--51408160	17	5.2	18	70	10	64	81	0	11	6	0.86
51408894--51408934	16	2.7	15	85	7	64	43	21	2	31	1.66
51409265--51409502	50	4.8	50	73	3	183	35	24	17	23	1.95
51409210--51409695	100	4.9	100	84	1	571	34	22	18	24	1.96
51409366--51409894	50	10.8	48	70	7	258	33	21	20	24	1.97
51409555--51409838	143	2.0	143	87	0	406	35	20	20	24	1.96
51409453--51409901	243	1.8	243	89	1	704	33	20	20	25	1.97
51409316--51409920	50	12.2	48	69	10	215	34	21	19	24	1.96
51409696--51409909	100	2.1	100	90	0	338	33	22	20	24	1.97
51413811--51413835	11	2.3	11	100	0	50	32	0	0	68	0.90
51418504--51418540	19	1.9	19	88	0	56	24	0	10	64	1.25
51418864--51418960	37	2.7	34	79	13	97	30	7	1	60	1.30
51418867--51418938	37	1.9	37	88	5	110	33	8	1	56	1.38
51431625--51431695	31	2.3	30	76	9	81	36	7	9	46	1.64
51441133--51441175	21	2.0	21	100	0	86	32	18	23	25	1.97
51458352--51458422	34	2.1	34	100	0	142	38	15	12	33	1.85
51464436--51464478	2	21.5	2	100	0	86	0	0	48	51	1.00
51475821--51476849	88	11.7	88	80	4	979	29	25	16	28	1.97
51475812--51476805	132	7.5	131	89	3	1194	29	26	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51475821--51476789	352	2.7	353	88	3	1391	29	26	16	27	1.97
51476701--51476790	45	2.2	39	86	13	119	26	26	21	25	1.99
51476963--51477149	95	2.0	93	91	4	304	29	22	19	28	1.98
51477058--51477420	132	2.7	133	93	3	615	29	23	19	27	1.98
51477320--51477512	96	2.0	93	94	4	334	29	23	18	29	1.97
51476857--51477544	359	1.9	360	91	3	1138	29	22	20	27	1.98
51488824--51488878	18	3.0	19	68	26	55	61	5	0	32	1.19
51488950--51488992	20	2.3	18	80	8	50	62	4	0	32	1.15
51489487--51489546	26	2.2	27	82	11	70	58	3	1	36	1.25
51489790--51489826	15	2.6	15	87	8	51	32	0	0	67	0.91
51492026--51492063	14	2.7	14	80	15	51	42	5	0	52	1.24
51496835--51496868	18	1.9	17	88	5	50	20	5	0	73	1.04
51522946--51523018	37	2.0	37	88	0	110	49	6	2	41	1.44
51522960--51523020	17	3.4	18	71	11	54	47	4	3	44	1.41
51522955--51523066	20	5.8	20	65	12	56	45	5	4	44	1.46
51526018--51526120	51	2.0	52	98	1	199	26	15	19	38	1.91
51534467--51534504	20	1.9	20	88	0	58	50	5	0	44	1.24
51535140--51535201	30	2.2	27	85	8	79	50	4	0	45	1.23
51535543--51535607	5	13.0	5	91	0	103	40	1	1	56	1.18
51535180--51536016	277	3.2	264	80	9	858	45	7	7	38	1.61
51536658--51536690	16	1.9	18	88	11	52	54	0	0	45	0.99
51543316--51543345	5	6.2	5	92	7	53	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51545302--51545348	21	2.3	20	85	3	58	25	4	27	42	1.73
51549903--51549949	21	2.3	20	92	3	76	21	4	31	42	1.72
51550727--51550787	15	4.2	15	77	6	63	27	4	1	65	1.22
51560715--51560768	27	2.0	27	85	7	74	29	1	0	68	1.00
51568653--51568763	51	2.2	51	85	4	152	44	14	12	28	1.82
51570118--51570306	105	1.8	105	94	2	335	26	8	28	35	1.87
51577726--51577766	21	2.0	21	90	0	64	19	29	21	29	1.98
51581025--51581056	7	4.6	7	96	0	55	46	9	0	43	1.35
51581991--51582036	14	3.4	14	84	3	58	56	10	2	30	1.46
51584232--51584805	50	11.5	49	70	4	394	24	24	20	29	1.99
51584214--51584809	100	6.0	100	93	0	996	24	23	21	30	1.99
51586098--51586132	7	5.0	7	86	13	54	14	17	0	68	1.21
51586098--51586132	13	2.5	15	86	13	56	14	17	0	68	1.21
51590156--51590201	14	3.4	14	84	3	58	56	10	2	30	1.46
51591916--51591975	13	4.5	13	74	12	50	55	0	1	43	1.10
51591901--51591948	24	2.0	25	84	12	64	47	2	4	45	1.33
51601147--51601200	28	1.9	28	88	0	81	27	27	18	25	1.98
51602819--51602868	20	2.7	18	77	22	59	50	4	2	44	1.32
51602887--51602944	17	3.4	17	76	9	55	50	0	0	50	1.00
51606876--51606923	19	2.5	19	90	6	71	54	6	4	35	1.45
51609518--51609619	42	2.4	42	80	4	107	16	20	18	44	1.87
51609563--51609670	40	2.6	41	73	16	98	16	25	15	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51612604--51612631	9	3.1	9	100	0	56	57	10	0	32	1.33
51612574--51612774	59	3.1	68	84	13	307	45	8	4	40	1.57
51612753--51612815	23	2.7	23	78	7	65	44	3	3	49	1.34
51613978--51614095	25	4.8	25	72	7	71	31	19	27	21	1.97
51614265--51614327	24	2.6	24	85	7	74	31	19	28	20	1.97
51616329--51616379	20	2.5	20	90	0	84	56	0	0	43	0.99
51623071--51623212	71	2.0	71	97	0	266	22	12	16	48	1.79
51627511--51627569	19	3.4	18	68	22	54	52	11	8	27	1.66
51627507--51627572	33	2.0	33	96	0	123	54	10	9	25	1.64
51630271--51630339	34	2.0	34	85	0	93	39	17	10	33	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196