genome.fa.s25.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  146  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43277951--43278003	18	2.9	18	80	2	61	41	45	1	11	1.51
43278107--43278173	18	3.7	18	89	0	107	23	8	25	41	1.83
43278107--43278173	9	7.4	9	81	0	80	23	8	25	41	1.83
43291412--43291490	32	2.5	32	84	10	108	31	20	17	30	1.96
43294013--43294076	32	2.0	31	90	3	101	39	23	9	28	1.86
43294293--43294489	41	4.8	41	92	5	317	27	22	20	28	1.99
43295378--43295431	28	1.9	28	88	7	83	35	18	3	42	1.68
43295990--43296014	12	2.1	12	100	0	50	48	24	0	28	1.52
43301674--43301736	32	2.0	31	90	3	99	39	23	9	26	1.86
43301951--43302151	41	4.7	43	86	11	279	27	22	20	29	1.99
43303689--43303713	13	1.9	13	100	0	50	68	24	0	8	1.16
43321005--43321078	36	2.1	36	100	0	148	35	16	8	40	1.78
43345405--43345447	18	2.4	18	100	0	86	37	18	4	39	1.72
43354108--43354174	34	1.9	34	84	6	89	56	4	1	37	1.29
43357478--43357514	2	18.5	2	100	0	74	0	51	0	48	1.00
43364012--43364149	41	3.4	40	88	2	195	24	26	18	30	1.98
43367620--43367728	57	1.9	58	84	5	150	30	12	22	33	1.92
43367620--43367751	57	2.3	57	81	10	144	29	12	21	35	1.91
43367958--43368451	69	7.2	69	79	2	436	18	20	26	35	1.95
43367970--43368458	207	2.4	207	80	2	534	17	19	26	35	1.95
43367920--43368458	138	3.9	137	78	4	483	18	19	26	35	1.95
43370386--43370434	24	2.0	24	84	7	64	53	0	18	28	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43386103--43386228	42	3.0	42	83	2	164	24	10	20	44	1.83
43388713--43388756	24	1.9	24	81	9	56	29	2	9	59	1.41
43389241--43389289	25	1.9	26	84	12	66	30	4	20	44	1.70
43392057--43392102	24	2.0	22	84	12	58	36	10	28	23	1.89
43392062--43392109	24	2.0	24	87	0	69	45	10	22	20	1.81
43392194--43392308	42	2.7	41	85	2	149	16	20	19	44	1.87
43392194--43392307	21	5.4	20	67	13	68	16	20	19	43	1.88
43392194--43392328	42	3.2	43	79	10	145	16	18	19	45	1.85
43398738--43398863	66	1.9	66	100	0	252	26	37	18	18	1.93
43398985--43399132	57	2.5	60	83	9	196	22	25	21	30	1.99
43407136--43407341	101	2.0	101	96	0	376	33	18	16	31	1.93
43414295--43414335	21	2.0	21	85	0	55	43	0	2	53	1.13
43414292--43414341	21	2.4	21	75	15	50	44	0	2	54	1.11
43414367--43414406	17	2.2	19	86	13	57	60	0	0	40	0.97
43414428--43414479	26	2.0	27	84	3	70	53	1	1	42	1.23
43414422--43414462	22	1.9	21	85	5	55	51	2	0	46	1.14
43414480--43414522	22	2.0	22	86	9	61	44	0	2	53	1.13
43421578--43421605	14	2.0	14	100	0	56	50	0	21	28	1.49
43424297--43424344	20	2.3	21	85	7	62	56	0	6	37	1.25
43426337--43426375	20	2.0	20	89	0	60	30	25	35	7	1.84
43434584--43434617	14	2.5	14	95	4	61	14	0	35	50	1.44
43434747--43434790	22	2.0	23	81	4	54	70	6	6	15	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43436711--43436775	27	2.4	27	73	17	62	12	12	3	72	1.24
43441133--43441195	29	2.2	29	100	0	126	22	4	3	69	1.21
43455490--43455551	26	2.4	26	86	0	88	33	12	16	37	1.87
43455760--43455792	17	1.9	17	93	0	57	42	6	0	51	1.26
43460511--43460564	21	2.6	21	88	5	83	29	16	40	12	1.86
43464314--43464343	13	2.3	13	94	0	51	23	10	13	53	1.69
43468020--43468068	9	5.4	9	95	0	89	42	22	10	24	1.84
43468214--43468267	18	2.9	18	80	2	63	12	1	44	40	1.54
43469004--43469067	30	2.1	30	100	0	128	51	15	3	29	1.59
43475255--43475281	2	13.5	2	100	0	54	51	48	0	0	1.00
43478858--43478901	20	2.1	21	87	4	63	68	0	2	29	1.02
43480899--43480938	21	1.9	21	90	10	64	67	5	0	27	1.11
43481068--43481100	12	2.8	12	86	13	50	30	0	3	66	1.06
43485213--43485238	4	6.5	4	100	0	52	76	0	0	23	0.78
43495495--43495652	41	3.8	40	76	11	124	32	25	15	25	1.96
43495495--43495652	42	3.8	43	79	11	152	32	25	15	25	1.96
43499576--43499705	43	3.0	42	83	8	163	21	17	29	31	1.96
43501014--43501049	15	2.5	14	86	8	54	44	8	0	47	1.33
43511085--43511122	19	2.0	19	94	0	67	31	7	26	34	1.85
43520897--43520931	7	5.0	7	93	6	54	71	0	0	28	0.86
43521221--43521293	19	3.8	19	92	0	128	38	16	9	35	1.81
43521398--43521424	14	1.9	14	100	0	54	14	0	11	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43522494--43522531	17	2.2	17	90	0	58	60	0	26	13	1.33
43532038--43532098	26	2.3	26	85	2	77	34	37	1	26	1.66
43532422--43532459	19	2.0	19	94	0	67	31	7	26	34	1.85
43540186--43540230	23	2.0	23	83	8	58	44	13	2	40	1.56
43541466--43541503	17	2.2	17	90	0	58	60	0	26	13	1.33
43551012--43551073	27	2.3	28	83	5	74	33	38	1	25	1.66
43551397--43551434	19	2.0	19	94	0	67	31	7	26	34	1.85
43557367--43557403	18	2.1	18	90	5	58	16	27	40	16	1.89
43559407--43559452	21	2.1	21	88	4	65	21	23	21	32	1.98
43562955--43563054	28	3.6	28	91	2	148	31	24	25	20	1.98
43562940--43563064	28	4.5	28	86	5	146	32	23	24	20	1.98
43563175--43563245	26	2.7	26	88	0	97	43	18	19	18	1.88
43563420--43563703	27	10.5	27	78	8	274	22	16	17	43	1.88
43563425--43563703	81	3.4	80	85	4	312	22	16	17	43	1.87
43568527--43568650	32	3.9	32	82	0	131	41	16	17	23	1.89
43568790--43568868	24	3.3	24	80	0	77	43	24	8	24	1.82
43568825--43568873	24	2.0	24	92	0	80	42	24	8	24	1.81
43568906--43569212	27	11.4	27	76	9	218	25	17	21	36	1.94
43568931--43569214	54	5.3	54	80	5	252	25	17	21	35	1.95
43568957--43569211	81	3.1	81	85	0	267	26	18	20	34	1.96
43570296--43570344	24	2.0	24	88	0	71	42	22	8	26	1.81
43570381--43570667	27	10.6	27	82	2	279	24	16	21	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43570403--43570656	54	4.7	54	85	1	312	23	16	22	36	1.94
43570387--43570623	109	2.2	110	84	6	320	23	17	22	37	1.94
43575353--43575418	28	2.4	28	81	0	87	30	27	24	18	1.98
43575519--43575569	26	2.0	25	92	7	84	39	23	21	15	1.92
43575742--43575800	27	2.2	27	84	0	73	20	16	23	38	1.92
43575781--43576112	27	12.3	27	84	3	382	21	16	18	43	1.88
43579737--43579831	42	2.3	42	88	0	136	27	25	9	37	1.87
43585364--43585592	29	8.0	29	74	8	175	49	8	18	23	1.75
43588538--43588668	65	2.0	65	95	0	235	32	16	13	36	1.88
43593118--43593165	22	2.1	23	84	3	62	72	0	10	16	1.10
43593593--43593630	13	2.9	13	85	11	51	52	2	13	31	1.54
43593868--43593967	42	2.5	38	82	11	112	60	0	3	37	1.12
43593950--43593984	17	2.1	17	94	0	61	57	0	0	42	0.99
43594129--43594165	17	2.2	17	100	0	74	43	5	16	35	1.71
43597961--43597994	18	1.9	18	94	5	61	70	0	23	5	1.09
43613690--43613726	19	2.0	19	94	5	67	40	0	5	54	1.24
43613690--43613743	19	2.9	18	86	8	65	42	0	5	51	1.25
43615187--43615317	30	4.4	31	73	6	119	31	16	6	45	1.73
43616007--43616052	19	2.3	20	85	3	67	69	0	28	2	1.00
43616009--43616054	16	2.9	16	78	18	51	71	0	26	2	0.97
43616015--43616073	21	3.0	20	80	11	59	74	0	20	5	1.00
43616252--43616294	19	2.4	19	80	7	54	20	48	30	0	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43616998--43617067	19	4.0	18	75	15	67	35	10	11	42	1.74
43617009--43617102	39	2.5	38	80	12	115	35	11	11	41	1.78
43617067--43617127	16	3.6	17	74	8	54	22	11	18	47	1.80
43617065--43617148	34	2.5	33	78	7	89	25	11	15	47	1.79
43625378--43626044	75	8.7	76	84	7	743	29	15	20	34	1.94
43626225--43626250	5	5.2	5	100	0	52	19	0	0	80	0.71
43626225--43626258	15	2.2	15	89	5	50	23	0	0	76	0.79
43626470--43626569	30	3.4	30	78	6	98	33	17	4	46	1.66
43627253--43627301	3	16.7	3	80	16	50	69	0	28	2	1.00
43627252--43627316	10	6.3	10	75	15	53	73	0	24	1	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196