genome.fa.s25.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  24  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6904337--6904400	33	2.0	31	90	6	101	26	1	3	68	1.13
6905877--6905902	5	5.2	5	100	0	52	42	19	19	19	1.90
6906656--6906715	30	2.0	31	83	3	77	41	0	38	20	1.52
6909437--6909594	43	3.7	43	77	5	135	31	29	16	23	1.96
6911887--6911935	21	2.5	20	77	9	64	22	20	22	34	1.97
6914454--6914533	37	2.2	37	88	0	124	40	17	15	27	1.89
6918659--6918686	5	5.6	5	100	0	56	39	21	0	39	1.54
6923584--6923647	30	2.1	30	88	0	92	29	6	39	25	1.80
6930336--6930361	6	4.3	6	100	0	52	84	0	0	15	0.62
6930724--6930789	25	2.6	25	85	4	89	40	13	15	30	1.85
6933165--6933212	18	2.7	17	81	9	60	41	4	16	37	1.68
6938399--6938535	45	3.0	44	86	6	186	37	27	14	21	1.92
6938356--6938535	90	2.0	88	85	6	238	35	26	15	22	1.94
6944342--6944518	39	4.5	39	90	0	255	28	3	21	46	1.67
6944503--6944556	23	2.3	23	96	0	99	37	3	22	37	1.72
6944342--6944538	39	5.1	40	81	8	167	29	3	21	45	1.67
6944342--6944538	78	2.5	79	79	4	222	29	3	21	45	1.67
6946699--6946725	3	9.0	3	100	0	54	66	0	0	33	0.92
6947950--6947988	18	2.2	18	90	9	62	51	2	5	41	1.38
6949456--6949486	5	6.0	5	92	7	53	58	19	22	0	1.40
6952842--6953012	93	1.8	93	91	2	281	28	18	23	29	1.98
6969373--6969431	28	2.1	28	90	0	91	27	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6969382--6969449	28	2.4	28	82	4	84	25	19	26	29	1.98
6969616--6969646	15	2.1	15	93	0	53	38	3	32	25	1.72
6971526--6971566	21	2.0	21	85	0	55	73	2	19	4	1.13
6973130--6973203	8	9.1	8	73	12	53	68	4	1	25	1.15
6973119--6973179	16	3.7	16	71	16	52	68	3	1	26	1.14
6974409--6974441	16	2.1	16	100	0	66	75	0	0	24	0.80
6977859--6977897	19	2.1	19	90	9	62	61	0	5	33	1.18
6980490--6980554	3	21.7	3	96	0	121	69	0	30	0	0.89
6983795--6983832	19	2.2	18	86	13	53	50	5	7	36	1.54
6990507--6990537	16	1.9	16	93	0	53	70	0	0	29	0.87
6990627--6990685	23	2.7	23	78	7	68	66	3	3	27	1.24
6992948--6992986	18	2.3	17	83	12	53	30	0	2	66	1.05
6993041--6993070	16	1.9	16	93	6	53	56	0	0	43	0.99
6996331--6996363	15	2.3	14	94	5	57	72	0	18	9	1.10
6996331--6996369	15	2.5	16	88	12	55	74	0	17	7	1.05
7000314--7000378	3	21.3	3	73	20	55	61	1	3	33	1.21
7000314--7000378	10	5.8	11	76	20	64	61	1	3	33	1.21
7000315--7000389	7	10.3	7	72	26	50	62	1	4	32	1.22
7002103--7002409	44	6.9	44	76	2	292	29	23	14	31	1.95
7001957--7002409	89	5.1	89	82	2	547	28	23	15	32	1.95
7002136--7002505	177	2.1	177	79	5	399	28	24	15	30	1.96
7002427--7003690	132	9.6	132	89	3	1778	27	24	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7002896--7003078	44	4.2	43	68	10	111	28	26	16	28	1.97
7003016--7003223	44	4.7	44	68	9	136	25	25	19	29	1.98
7002427--7003690	529	2.4	529	94	0	2208	27	24	19	28	1.99
7002433--7003690	397	3.2	395	88	2	1846	27	24	19	28	1.98
7003658--7003744	45	1.9	45	80	0	102	21	25	21	31	1.98
7005962--7006001	19	2.2	17	83	12	53	62	2	20	15	1.43
7005963--7006001	18	2.1	18	90	4	60	64	2	17	15	1.41
7007893--7007938	19	2.4	19	85	7	58	47	8	19	23	1.77
7008377--7008407	16	1.9	16	93	0	53	32	22	19	25	1.97
7008752--7008781	13	2.2	13	94	5	51	60	13	13	13	1.60
7008752--7008781	7	4.4	7	91	8	53	60	13	13	13	1.60
7010028--7010092	3	21.0	3	73	17	53	63	1	3	32	1.19
7010034--7010092	13	4.5	13	79	12	75	64	1	3	30	1.20
7014217--7014356	24	5.8	24	69	17	83	33	22	25	18	1.97
7014217--7014356	48	2.9	49	76	4	131	33	22	25	18	1.97
7015617--7015646	16	1.9	15	93	6	51	66	6	16	10	1.41
7016254--7016436	47	3.9	46	85	4	240	50	7	14	27	1.68
7018417--7018486	32	2.2	32	84	5	97	18	22	31	27	1.97
7026289--7026435	41	3.5	41	87	7	208	63	0	2	34	1.09
7026363--7026396	17	2.0	17	94	0	59	67	0	0	32	0.91
7028394--7028510	62	1.9	61	86	5	166	49	4	4	41	1.42
7037805--7037844	20	2.0	21	85	5	55	52	15	22	10	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7047790--7047832	3	14.3	3	85	0	59	60	6	0	32	1.23
7048573--7048610	14	2.4	17	87	12	55	52	0	0	47	1.00
7048590--7048633	12	3.7	11	80	14	52	45	2	0	52	1.13
7048585--7048647	24	2.7	23	78	9	65	50	1	0	47	1.10
7048602--7048650	20	2.5	20	76	6	55	53	2	0	44	1.12
7049037--7049082	15	2.9	15	78	12	56	78	2	2	17	0.96
7051259--7051291	17	1.9	17	88	11	50	9	0	21	69	1.15
7051356--7051622	125	2.1	125	89	2	403	31	15	22	31	1.95
7054129--7054161	15	2.3	15	89	5	50	66	6	0	27	1.15
7054258--7054316	30	2.0	29	90	6	93	57	1	0	40	1.09
7054350--7054400	22	2.3	21	83	9	66	33	0	33	33	1.58
7054353--7054452	52	1.9	52	91	0	164	38	0	32	30	1.58
7054405--7054460	22	2.5	22	97	2	103	41	0	30	28	1.57
7056286--7056349	13	4.9	13	75	11	51	39	6	15	39	1.73
7056481--7056563	44	1.9	44	81	16	102	46	1	2	49	1.22
7058025--7058066	21	2.0	21	95	0	75	19	35	4	40	1.72
7058284--7058313	15	2.0	15	93	0	51	23	16	20	40	1.91
7058599--7058625	13	2.1	13	100	0	54	48	0	29	22	1.51
7061157--7061205	20	2.5	20	86	0	71	51	0	4	44	1.20
7061718--7061770	14	3.7	14	76	14	54	60	0	1	37	1.08
7061875--7061902	2	14.0	2	100	0	56	50	0	0	50	1.00
7066774--7066805	4	8.0	4	100	0	64	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7068339--7068587	50	4.8	50	86	3	318	20	29	23	26	1.99
7068338--7068587	100	2.4	104	88	5	355	21	29	23	26	1.99
7068682--7068713	13	2.5	13	94	0	55	56	12	0	31	1.37
7068925--7068982	30	1.9	31	82	6	75	29	22	5	43	1.75
7076280--7076320	8	5.1	8	90	0	55	24	9	24	41	1.85
7076280--7076320	12	3.4	12	86	0	55	24	9	24	41	1.85
7083459--7083674	107	2.0	108	96	2	400	32	11	19	36	1.88
7091292--7091377	26	3.3	25	77	6	82	36	23	16	24	1.94
7091305--7091388	26	3.2	26	77	0	96	34	28	16	20	1.94
7096802--7096841	19	2.1	19	86	13	55	62	15	0	22	1.32
7096892--7096962	25	2.8	25	95	0	124	57	2	4	35	1.33
7103988--7104050	30	2.1	30	87	0	90	26	4	12	55	1.57
7104817--7104862	23	2.0	23	86	0	65	19	4	15	60	1.51
7114136--7114199	27	2.3	27	81	7	67	31	28	15	25	1.96
7114149--7114210	27	2.3	28	77	5	65	29	24	11	35	1.90
7115706--7115795	27	3.3	27	74	9	76	43	18	18	18	1.89
7128001--7128034	11	3.1	11	100	0	68	44	8	11	35	1.72
7134012--7134056	20	2.2	20	84	7	56	57	4	6	31	1.44
7134101--7134145	19	2.4	18	82	7	54	60	6	0	33	1.23
7140021--7140060	14	2.9	14	84	0	53	32	7	17	42	1.77
7140029--7140095	35	1.9	35	84	3	91	32	10	11	44	1.75
7141436--7141505	27	2.6	27	80	8	79	51	20	2	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7143366--7143512	58	2.6	56	93	2	170	38	4	4	53	1.39
7144269--7144296	14	2.0	14	100	0	56	35	7	7	50	1.57
7147425--7147457	16	2.1	16	94	0	57	6	15	15	63	1.49
7149806--7149847	15	2.7	16	82	14	52	45	0	2	52	1.13
7149797--7149838	15	2.9	15	82	10	52	47	0	0	52	1.00
7149992--7150082	45	2.0	44	87	2	128	34	28	5	31	1.80
7150061--7150104	16	2.8	16	96	0	79	25	36	2	36	1.69
7151090--7151150	18	3.3	18	84	6	70	32	3	3	60	1.29
7151204--7151261	20	2.9	20	90	7	91	51	1	0	46	1.11
7151197--7151267	20	3.5	20	83	9	90	49	2	0	47	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196