genome.fa.s25.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  190  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56403036--56403552	230	2.2	230	88	1	759	28	18	20	33	1.96
56403881--56403924	19	2.3	19	84	0	61	31	43	2	22	1.66
56405941--56406830	37	23.7	39	66	16	185	45	10	4	38	1.60
56405960--56406087	57	2.3	56	86	4	168	46	10	3	39	1.56
56406047--56406168	37	3.3	37	89	0	190	48	10	5	35	1.62
56406105--56406795	112	5.9	120	79	12	561	45	10	5	38	1.61
56406105--56406472	115	3.2	113	89	3	542	45	10	5	38	1.62
56406110--56406472	57	6.4	57	85	3	498	45	10	5	38	1.62
56406267--56406660	189	2.1	188	97	0	743	44	10	5	40	1.61
56406454--56406827	57	6.7	57	80	6	419	46	10	4	38	1.58
56406560--56406589	9	3.3	9	90	0	51	46	16	0	36	1.47
56406474--56406854	55	6.9	55	80	8	398	46	11	4	37	1.60
56406672--56406701	9	3.3	9	90	0	51	43	16	0	40	1.48
56406150--56406772	300	2.1	303	90	2	977	44	10	5	39	1.61
56405945--56406775	20	44.0	20	65	16	80	45	10	5	38	1.60
56406784--56407047	9	30.1	9	75	9	242	45	20	1	32	1.60
56408991--56409061	21	3.4	21	88	0	106	30	18	46	4	1.68
56409423--56409623	42	4.7	42	88	3	278	22	19	22	34	1.96
56409423--56409637	43	5.0	43	87	5	285	22	20	23	33	1.97
56409423--56409637	85	2.5	83	87	5	297	22	20	23	33	1.97
56410025--56410087	25	2.5	25	84	2	72	19	9	11	60	1.57
56410529--56410574	23	2.0	23	83	8	58	60	6	2	30	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56416854--56416898	4	11.0	4	86	9	56	75	0	24	0	0.80
56416853--56416897	21	2.1	21	88	8	65	77	0	22	0	0.76
56417341--56417384	5	8.8	5	92	0	70	25	0	20	54	1.45
56420490--56420514	11	2.3	11	100	0	50	28	0	8	64	1.22
56422843--56422919	40	1.9	40	86	0	109	29	7	20	41	1.81
56423132--56423283	45	3.4	45	83	3	182	23	17	18	40	1.91
56425891--56426373	241	2.0	241	98	0	939	27	14	21	36	1.92
56427164--56427197	11	3.1	11	100	0	68	26	17	29	26	1.98
56432583--56432619	18	2.1	19	90	10	60	70	5	5	18	1.27
56432743--56432777	3	12.0	3	93	6	63	34	0	0	65	0.93
56433928--56433967	3	13.3	3	100	0	80	32	32	0	35	1.58
56440679--56440737	25	2.3	26	82	8	77	57	3	0	38	1.15
56443252--56443300	16	3.1	17	88	8	68	51	0	0	48	1.00
56444951--56444994	18	2.7	15	80	16	52	47	0	13	38	1.43
56445268--56445300	14	2.3	15	89	5	50	51	9	0	39	1.34
56450249--56450341	31	3.1	30	76	6	91	49	16	3	31	1.61
56453974--56454109	46	3.0	46	93	0	227	29	27	8	33	1.87
56454033--56454107	23	3.2	24	63	21	59	29	30	6	33	1.83
56455321--56455368	17	2.9	17	87	3	71	50	20	2	27	1.60
56455519--56455595	38	2.0	38	100	0	154	36	12	5	45	1.65
56460467--56460505	19	2.1	18	86	13	53	64	5	2	28	1.28
56477789--56477813	7	3.6	7	100	0	50	28	12	0	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56480155--56480375	114	1.9	113	82	4	275	41	17	6	33	1.76
56486397--56486459	30	2.1	30	96	0	117	50	20	4	23	1.67
56490735--56490794	31	1.9	31	86	6	86	31	10	10	48	1.70
56493691--56493720	15	2.0	15	100	0	60	73	6	0	20	1.05
56500018--56500049	12	2.7	12	95	0	55	50	15	3	31	1.60
56503026--56503085	31	1.9	31	83	6	77	31	15	11	41	1.82
56504259--56504319	9	6.8	9	96	0	104	22	9	29	37	1.87
56512582--56512607	5	5.2	5	100	0	52	19	0	0	80	0.71
56516481--56516549	13	4.8	14	71	16	52	62	1	4	31	1.24
56532034--56532075	11	3.9	11	85	14	61	45	4	0	50	1.23
56532034--56532075	21	1.9	22	90	9	68	45	4	0	50	1.23
56533886--56533926	16	2.6	16	88	0	64	43	4	4	46	1.46
56533900--56533961	22	2.7	23	87	5	81	46	1	3	48	1.28
56551836--56551891	27	2.1	27	87	9	80	60	8	0	30	1.27
56555889--56556018	27	4.7	27	71	16	104	52	12	10	25	1.70
56555889--56556055	85	2.0	85	100	0	334	49	13	10	26	1.73
56556101--56556166	32	2.1	33	85	5	91	42	13	13	30	1.83
56567552--56568139	117	4.9	117	89	5	840	38	13	27	20	1.90
56567522--56568143	237	2.6	235	87	5	876	38	13	27	20	1.90
56587789--56587860	30	2.4	30	95	4	128	45	2	8	43	1.48
56594738--56594774	18	2.1	18	94	0	65	37	29	5	27	1.79
56594786--56594836	21	2.4	21	80	0	57	35	29	3	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56597421--56597517	51	1.9	51	83	8	126	36	9	18	36	1.83
56598887--56598958	30	2.5	30	79	4	85	36	4	4	55	1.38
56609248--56609319	25	2.7	27	80	20	82	61	0	2	36	1.11
56609723--56609763	19	2.1	19	86	4	55	41	2	0	56	1.13
56613390--56613550	83	1.9	83	93	0	277	38	14	18	28	1.90
56616319--56616350	14	2.3	14	100	0	64	6	15	46	31	1.71
56621434--56621465	14	2.3	14	100	0	64	6	15	46	31	1.71
56624131--56624295	23	7.2	23	77	4	163	33	26	17	22	1.96
56624131--56624295	46	3.6	46	85	3	215	33	26	17	22	1.96
56624131--56624295	69	2.4	69	78	6	181	33	26	17	22	1.96
56624523--56624561	18	2.2	17	86	13	53	46	20	0	33	1.51
56630736--56630830	47	2.0	47	100	0	190	28	14	33	23	1.94
56631865--56631912	24	2.0	24	84	12	62	52	0	0	47	1.00
56632001--56632031	14	2.2	14	100	0	62	45	6	29	19	1.75
56635873--56635921	25	2.0	25	83	0	62	71	6	2	20	1.18
56638306--56638359	25	2.1	25	83	10	65	61	3	0	35	1.14
56638502--56638529	11	2.5	11	100	0	56	64	7	0	28	1.20
56639237--56639284	21	2.2	22	82	10	55	31	6	2	60	1.33
56639865--56639890	10	2.6	10	100	0	52	73	0	0	26	0.84
56641902--56641978	32	2.4	32	85	6	95	35	11	15	37	1.84
56644773--56644879	22	4.8	22	64	24	53	37	1	5	55	1.34
56650407--56650440	17	2.0	17	88	0	50	47	0	5	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56652738--56652782	21	2.3	19	84	7	54	40	15	2	42	1.59
56652763--56652797	14	2.5	14	85	0	52	40	22	5	31	1.78
56669267--56669299	15	2.1	16	88	5	50	36	0	3	60	1.12
56671525--56671589	31	2.1	31	85	8	87	56	12	1	29	1.45
56674493--56674561	33	2.1	33	89	5	104	43	36	5	14	1.70
56676315--56676363	13	3.8	13	78	10	64	38	2	10	48	1.48
56676316--56676367	26	2.0	26	100	0	104	38	3	11	46	1.59
56680598--56680680	39	2.1	40	97	2	159	36	4	15	43	1.68
56685364--56685401	17	2.1	18	85	9	51	15	5	10	68	1.36
56694688--56694839	76	2.0	76	100	0	304	21	15	21	42	1.89
56706975--56707012	20	1.9	20	89	10	60	55	0	0	44	0.99
56718994--56719036	20	2.2	20	87	8	61	53	0	2	44	1.13
56719132--56719220	39	2.2	41	86	4	119	34	2	7	55	1.42
56720312--56720353	14	2.9	15	82	7	59	11	0	40	47	1.40
56720470--56720912	125	3.5	125	92	0	724	31	18	20	28	1.97
56724015--56724065	26	2.0	26	96	0	93	11	23	35	29	1.90
56723937--56724190	102	2.5	102	88	7	385	18	19	30	31	1.95
56724147--56724218	30	2.3	32	95	4	130	16	22	29	31	1.96
56730357--56730385	14	2.0	15	93	6	51	34	13	13	37	1.85
56731515--56731564	26	1.9	26	95	0	91	14	22	34	30	1.93
56731439--56731798	101	3.6	101	91	4	561	19	19	30	30	1.97
56731618--56731667	25	2.0	25	96	0	91	14	24	32	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56731717--56731766	26	2.0	26	92	7	86	14	24	34	28	1.93
56733874--56733907	16	2.1	16	94	0	59	41	2	5	50	1.42
56735339--56735501	13	12.6	13	73	15	99	50	4	6	38	1.47
56735372--56735463	39	2.3	40	90	1	141	54	4	4	36	1.40
56735615--56735648	15	2.3	15	94	0	59	41	2	14	41	1.61
56735684--56735778	13	7.2	12	76	15	73	55	4	3	36	1.35
56735693--56735778	27	3.3	25	80	8	91	54	4	3	37	1.38
56735684--56735778	39	2.4	40	89	5	140	55	4	3	36	1.35
56735688--56735816	13	10.1	12	72	18	66	54	3	3	38	1.35
56735928--56735961	15	2.3	15	94	0	59	41	2	14	41	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196