genome.fa.s25.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  118  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35650684--35650818	68	2.0	69	83	1	173	49	4	5	40	1.45
35655452--35655521	21	3.3	21	88	4	97	14	24	15	45	1.83
35655452--35655535	21	4.1	21	86	6	93	14	22	16	46	1.83
35657427--35657466	21	1.9	21	89	0	62	20	42	20	17	1.89
35657674--35657708	17	1.9	19	88	11	56	17	8	8	65	1.44
35659183--35659329	30	4.9	30	83	9	142	41	0	17	41	1.49
35659183--35659329	58	2.5	60	79	10	160	41	0	17	41	1.49
35659426--35660097	125	5.4	125	86	3	890	39	15	17	27	1.90
35660167--35660237	25	2.8	25	82	4	81	52	1	23	22	1.55
35662238--35662271	18	1.9	18	88	5	52	26	2	8	61	1.40
35664273--35664417	27	5.4	27	87	0	166	18	17	21	42	1.89
35677553--35677584	16	1.9	17	93	6	57	15	6	0	78	0.95
35677546--35677589	20	2.3	18	85	14	54	13	9	0	77	0.99
35678560--35678595	12	3.0	12	84	15	56	80	2	0	16	0.83
35689877--35690002	42	2.9	43	74	10	114	35	23	15	26	1.94
35697325--35697446	23	5.3	23	81	3	156	30	25	21	22	1.99
35697325--35697446	46	2.7	46	92	0	190	30	25	21	22	1.99
35700535--35700578	18	2.4	19	85	11	65	25	2	45	27	1.65
35710792--35710829	3	12.7	3	100	0	76	65	0	0	34	0.93
35730496--35730553	27	2.1	27	83	3	71	31	20	13	34	1.92
35730462--35730553	28	3.3	27	74	6	76	30	22	13	33	1.92
35730507--35730564	27	2.1	27	84	6	73	31	20	8	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35733383--35733455	36	2.0	36	97	0	137	35	19	9	35	1.84
35734844--35734926	21	4.0	21	87	0	121	15	33	21	28	1.94
35737705--35737785	43	1.9	43	85	7	112	65	0	3	30	1.10
35744311--35744336	3	8.7	3	100	0	52	0	30	0	69	0.89
35747401--35747603	41	4.6	41	80	14	226	27	20	27	24	1.99
35747423--35747603	94	1.9	95	90	1	292	28	19	26	25	1.99
35748360--35748425	11	6.4	11	75	21	63	37	3	0	59	1.13
35748320--35748436	39	3.0	40	87	6	179	36	2	0	60	1.10
35748319--35748393	29	2.5	30	80	12	82	36	2	0	61	1.10
35751296--35751339	23	1.9	23	85	0	61	61	2	9	27	1.38
35752507--35752934	132	3.2	132	87	1	617	24	23	20	31	1.98
35764262--35764458	98	2.0	98	98	0	385	37	24	10	27	1.88
35765025--35765082	27	2.1	27	81	6	64	58	3	5	32	1.37
35765242--35765285	23	1.9	23	85	0	61	61	2	9	27	1.38
35770580--35770819	81	3.0	81	97	0	453	34	18	12	34	1.89
35775536--35775569	3	11.3	3	100	0	68	35	32	0	32	1.58
35779881--35779918	14	2.9	14	84	11	53	5	5	7	81	0.98
35779881--35779954	24	3.0	25	86	4	87	13	2	8	75	1.13
35779882--35779954	12	6.1	12	73	16	62	13	1	8	76	1.07
35780049--35780078	10	3.1	10	90	9	53	40	0	0	60	0.97
35780083--35781092	363	2.8	361	88	4	1431	28	13	13	45	1.80
35780878--35780941	11	5.5	11	73	20	51	18	0	4	76	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35780878--35780927	25	2.0	24	85	11	66	18	0	4	78	0.91
35780876--35780929	24	2.3	24	78	12	60	20	0	3	75	0.95
35780882--35780941	25	2.4	25	78	15	63	20	0	5	75	0.99
35789498--35789523	13	2.0	13	100	0	52	53	7	0	38	1.30
35792651--35792691	20	2.0	20	100	0	82	36	24	19	19	1.95
35795165--35795206	20	2.1	20	86	0	57	47	0	7	45	1.30
35806154--35806395	50	4.7	50	81	4	227	23	26	21	28	1.99
35820911--35820967	22	2.6	23	83	8	73	43	19	22	14	1.86
35821989--35822035	24	2.0	24	86	0	67	38	8	6	46	1.60
35822574--35822605	16	2.0	16	100	0	64	31	18	12	37	1.88
35824974--35825012	2	19.5	2	100	0	78	0	51	0	48	1.00
35827297--35827384	27	3.3	27	93	0	149	43	10	10	36	1.73
35828314--35828601	156	1.9	154	84	4	391	41	10	5	43	1.62
35828721--35828762	20	2.0	21	86	4	59	78	0	14	7	0.95
35842161--35842195	17	2.0	18	88	5	54	42	5	2	48	1.41
35843594--35843631	19	2.0	19	85	10	51	42	0	15	42	1.47
35843887--35843918	13	2.5	13	94	0	55	40	9	6	43	1.62
35844482--35844546	23	3.0	22	80	15	89	16	21	23	38	1.93
35844689--35844716	9	3.1	9	100	0	56	57	0	10	32	1.33
35849813--35849877	23	3.0	22	82	8	80	40	23	20	16	1.92
35850814--35850862	9	5.4	9	80	9	55	4	16	4	75	1.11
35850814--35850862	18	2.7	18	84	6	64	4	16	4	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35851086--35851147	24	2.6	24	94	0	106	35	20	4	38	1.74
35853538--35853770	46	5.1	46	93	0	378	30	24	9	36	1.86
35855017--35855063	17	2.8	17	83	3	60	55	14	0	29	1.40
35855605--35855651	21	2.2	21	88	0	67	2	44	19	34	1.62
35856753--35856793	21	2.0	21	85	9	57	31	2	24	41	1.68
35857156--35857203	25	2.0	25	87	4	71	14	27	20	37	1.92
35857456--35857515	25	2.4	25	85	0	84	23	31	18	26	1.97
35869220--35869309	42	2.1	42	83	0	108	20	34	23	22	1.97
35870167--35870462	43	6.9	43	87	2	398	28	31	17	21	1.97
35873394--35873440	15	3.3	15	79	8	53	40	34	0	25	1.56
35873815--35874029	42	5.1	43	88	2	319	26	31	18	23	1.97
35873815--35874029	85	2.5	84	87	3	308	26	31	18	23	1.97
35878332--35878372	21	2.0	21	90	0	64	41	39	0	19	1.52
35878360--35878413	7	7.6	7	81	4	63	50	29	0	20	1.49
35878360--35878408	14	3.4	14	86	5	71	48	32	0	18	1.48
35878538--35878671	66	2.0	66	98	0	259	41	7	6	44	1.59
35878791--35879151	41	8.8	41	92	0	569	28	27	24	19	1.98
35879216--35879324	40	2.8	40	82	9	143	23	24	18	33	1.97
35879689--35880112	116	3.7	114	85	2	573	25	25	22	26	2.00
35884467--35884525	21	2.8	20	80	14	57	54	3	1	40	1.27
35884496--35884589	38	2.5	37	91	3	152	63	0	1	35	1.01
35884496--35884589	37	2.5	37	92	3	152	63	0	1	35	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35884545--35884570	11	2.4	11	100	0	52	61	0	0	38	0.96
35884557--35884599	16	2.6	16	81	3	50	62	0	0	37	0.95
35884670--35885208	270	2.0	273	97	1	1012	18	30	20	30	1.97
35888528--35888626	23	4.3	23	94	0	171	21	21	27	30	1.98
35888528--35888626	46	2.2	46	98	0	189	21	21	27	30	1.98
35890172--35890295	30	4.0	30	87	6	185	43	18	2	35	1.63
35890172--35890296	63	2.0	63	93	0	214	43	19	2	35	1.64
35911537--35911683	73	2.0	73	100	0	294	38	20	10	29	1.87
35913893--35913970	41	1.9	40	84	2	102	39	19	10	30	1.85
35914684--35914708	4	6.2	4	100	0	50	48	0	0	52	1.00
35922909--35922939	15	2.1	15	93	0	53	58	0	3	38	1.15
35924550--35924617	34	2.0	34	97	0	127	41	22	11	25	1.87
35927557--35927584	14	2.0	14	100	0	56	14	35	14	35	1.86
35930853--35930930	40	2.0	40	85	12	108	62	5	0	32	1.17
35931597--35931632	17	2.1	17	89	0	54	52	0	0	47	1.00
35955456--35955505	21	2.5	22	75	15	54	50	6	2	42	1.38
35961352--35961395	21	2.2	21	88	11	67	36	0	20	43	1.52
35965509--35965653	55	2.6	55	91	1	236	24	9	15	50	1.74
35971736--35971779	22	2.0	22	90	0	70	54	15	9	20	1.68
35974349--35974545	98	2.0	98	91	2	315	35	24	11	28	1.90
35975180--35975223	23	1.9	23	90	0	70	56	4	9	29	1.50
35975847--35975978	19	6.8	19	90	3	210	37	14	10	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35975847--35975977	59	2.3	59	91	2	212	37	13	10	38	1.80
35976122--35976271	38	3.9	37	70	13	113	21	20	17	41	1.90
35976139--35976333	79	2.5	79	86	0	248	22	21	16	40	1.91
35977537--35977564	7	4.0	7	100	0	56	14	0	0	85	0.59
35987795--35987840	24	1.9	24	82	8	58	34	6	21	36	1.80
35990892--35990967	23	3.3	23	96	0	143	31	26	21	21	1.98
35991053--35991081	8	3.6	8	100	0	58	34	27	13	24	1.93
35991186--35991224	18	2.2	17	86	13	53	46	20	0	33	1.51
35998228--35998303	23	3.3	23	96	0	143	31	26	21	21	1.98
35998390--35998418	8	3.6	8	100	0	58	34	27	13	24	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196