genome.fa.s25.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  111  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33581559--33581601	19	2.3	18	81	18	52	16	2	6	74	1.14
33583422--33583480	20	3.0	20	85	5	75	10	23	22	44	1.83
33586048--33586078	16	1.9	16	93	0	53	35	0	9	54	1.33
33586047--33586085	16	2.4	16	82	4	51	33	0	7	58	1.26
33590698--33590734	18	2.1	18	89	0	56	24	18	16	40	1.90
33596660--33596697	19	2.0	19	100	0	76	31	26	5	36	1.79
33602521--33602580	26	2.3	26	82	5	68	31	21	21	25	1.98
33602534--33602586	26	2.0	27	89	10	83	26	20	22	30	1.98
33603859--33603898	6	7.2	6	91	2	50	62	0	2	35	1.09
33620570--33621040	47	10.1	47	93	1	743	32	9	29	28	1.88
33621159--33621237	37	2.1	37	90	0	122	24	18	31	25	1.98
33623851--33623877	14	1.9	14	100	0	54	7	18	0	74	1.05
33646936--33647006	20	3.5	20	75	3	70	23	21	21	33	1.97
33646939--33647043	41	2.6	40	80	4	120	23	20	20	35	1.96
33647933--33647975	22	2.0	22	81	9	52	13	11	11	62	1.54
33650396--33650473	29	2.7	28	84	11	104	25	15	30	28	1.96
33650426--33650752	173	1.9	174	93	0	566	29	14	24	31	1.94
33655799--33655876	29	2.7	28	84	11	104	25	15	30	28	1.96
33655829--33656155	173	1.9	174	93	0	566	29	14	24	31	1.94
33657454--33657479	5	5.2	5	100	0	52	42	0	0	57	0.98
33658890--33658948	26	2.3	25	91	5	100	16	27	6	49	1.71
33664048--33664149	53	1.9	53	81	0	123	26	25	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33669500--33669545	19	2.3	21	82	17	62	15	0	13	71	1.14
33671299--33671378	25	3.2	25	84	8	83	31	18	21	28	1.97
33671334--33671411	24	3.2	24	79	15	97	34	12	21	30	1.91
33672536--33672600	27	2.5	26	73	12	69	43	4	1	50	1.32
33677189--33677362	89	2.0	89	94	0	303	35	20	16	28	1.94
33680022--33680055	16	2.2	15	89	5	50	44	0	0	55	0.99
33685979--33686201	119	1.9	120	83	6	292	24	28	22	25	1.99
33685977--33686201	40	5.7	40	84	6	269	24	28	22	24	1.99
33693912--33694134	79	2.8	80	83	9	287	25	27	22	24	2.00
33693912--33694134	40	5.7	40	85	7	278	25	27	22	24	2.00
33695732--33695815	42	2.0	42	90	0	132	35	5	14	44	1.69
33703070--33703099	14	2.1	14	93	0	51	6	10	6	76	1.15
33705272--33705318	25	2.0	23	83	8	58	10	31	4	53	1.55
33709264--33709447	79	2.3	81	80	9	209	24	22	27	26	2.00
33709263--33709447	40	4.7	40	81	7	209	24	22	27	26	2.00
33709316--33709480	79	2.1	79	82	6	192	26	21	26	26	1.99
33713651--33713943	50	5.8	50	89	0	415	26	21	30	21	1.99
33723943--33723987	22	2.0	23	82	8	56	40	24	4	31	1.75
33726449--33726671	40	5.6	40	84	3	236	26	28	20	24	1.99
33732442--33732484	20	2.1	21	82	4	52	0	39	0	60	0.97
33735134--33735271	50	2.8	50	81	0	159	23	31	20	25	1.98
33737354--33737420	6	11.2	6	100	0	134	16	16	0	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33740762--33740837	38	2.0	39	92	2	127	51	26	2	19	1.60
33740970--33741044	37	2.0	37	89	0	114	36	4	14	45	1.64
33741043--33741091	9	5.4	9	90	0	71	28	10	24	36	1.88
33741164--33741222	28	2.1	28	80	0	64	40	8	15	35	1.77
33750167--33750197	3	10.3	3	92	0	53	64	0	32	3	1.09
33756209--33756246	20	2.0	20	85	10	53	5	10	55	28	1.56
33756684--33756743	31	1.9	31	83	6	77	46	13	6	33	1.69
33768028--33768137	40	2.7	40	80	8	125	29	20	25	25	1.99
33768335--33768371	14	2.5	15	95	4	67	18	0	45	35	1.50
33768499--33768573	21	3.5	21	81	5	71	18	0	42	38	1.51
33768621--33768683	28	2.2	29	81	16	78	19	4	39	36	1.72
33768824--33769089	125	2.1	125	82	5	306	34	14	21	30	1.93
33770800--33771508	123	5.9	122	70	17	453	43	8	2	45	1.47
33771017--33771069	20	2.6	21	78	3	63	41	11	0	47	1.39
33770948--33771182	97	2.4	100	92	2	395	42	8	1	46	1.45
33771180--33771220	15	2.8	15	96	3	75	41	4	0	53	1.22
33771189--33771239	12	4.2	12	80	17	52	43	5	0	50	1.26
33770825--33771511	259	2.9	221	75	16	582	43	8	2	46	1.45
33771183--33771234	15	3.7	15	85	10	65	44	3	0	51	1.19
33771169--33771241	15	5.9	12	77	19	55	46	5	0	47	1.25
33771231--33771422	100	1.9	100	98	0	375	44	7	1	46	1.39
33771579--33771657	9	8.8	9	73	5	52	45	15	1	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33772881--33773069	49	3.7	50	80	7	193	26	21	29	22	1.99
33773333--33773371	20	2.0	20	89	0	60	53	2	25	17	1.56
33775199--33775381	78	2.3	80	79	9	196	25	21	27	25	1.99
33775198--33775381	40	4.7	40	81	6	207	25	21	27	25	1.99
33783094--33783274	79	2.3	81	82	7	219	25	22	27	24	2.00
33783094--33783274	40	4.6	40	81	9	201	25	22	27	24	2.00
33783143--33783307	79	2.1	79	83	6	201	26	21	27	24	1.99
33785529--33785828	9	34.7	9	74	11	184	46	18	1	34	1.56
33785529--33785800	150	1.9	144	87	8	410	46	17	1	34	1.56
33791111--33791145	17	2.1	17	88	0	52	42	20	11	25	1.85
33797951--33797991	20	2.0	20	100	0	82	65	9	14	9	1.46
33798450--33798504	27	2.0	28	85	3	76	12	49	5	32	1.64
33800528--33800720	50	3.7	50	77	6	190	28	21	27	22	1.99
33800968--33801016	20	2.5	20	78	15	57	59	4	26	10	1.48
33807737--33807866	50	2.6	50	80	4	145	26	21	29	22	1.99
33808132--33808180	20	2.5	20	81	15	66	57	6	24	12	1.58
33818334--33818461	41	3.1	41	87	2	168	14	21	28	35	1.92
33827275--33827359	44	1.9	44	82	2	107	42	1	2	54	1.21
33832167--33832197	3	10.3	3	92	0	53	64	0	3	32	1.09
33837804--33837838	18	1.9	18	88	11	54	31	5	8	54	1.54
33839812--33839875	30	2.1	31	82	8	78	40	17	9	32	1.81
33841591--33841673	43	1.9	43	100	0	166	42	14	30	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33841898--33842093	50	3.8	50	82	4	212	27	20	28	23	1.99
33849535--33849692	75	2.1	75	81	0	190	28	28	13	29	1.95
33851428--33851470	22	2.0	22	82	17	54	13	11	9	65	1.48
33859097--33859127	15	2.1	15	93	0	53	38	9	12	38	1.77
33861301--33861334	17	2.0	17	100	0	68	23	29	5	41	1.78
33873481--33873555	27	2.8	27	97	0	141	26	22	32	18	1.97
33873563--33873613	21	2.4	22	90	6	77	29	1	11	56	1.46
33873585--33873731	61	2.4	61	94	1	251	29	0	12	57	1.40
33873701--33873795	46	2.0	48	88	6	142	28	0	13	57	1.36
33873706--33873941	19	13.2	19	69	22	124	28	0	13	57	1.37
33873585--33873794	61	3.3	62	83	12	236	29	0	12	57	1.40
33873741--33873780	8	4.6	8	82	17	53	25	0	15	60	1.35
33873728--33873780	27	2.0	27	96	0	97	26	0	15	58	1.37
33873706--33873928	61	3.5	62	77	16	206	27	0	13	58	1.36
33873645--33873845	113	1.8	110	88	7	307	28	0	12	58	1.35
33873937--33874052	60	1.9	60	89	0	178	34	1	12	51	1.49
33874174--33874210	16	2.4	16	90	4	58	37	2	5	54	1.38
33885867--33885900	10	3.4	10	92	8	52	23	8	0	67	1.18
33893463--33893497	16	2.2	16	100	0	70	14	28	20	37	1.91
33897661--33898142	98	5.0	97	72	16	332	33	17	20	28	1.95
33897759--33897993	44	5.1	44	72	16	145	32	18	20	28	1.96
33897569--33898091	283	1.8	283	94	0	920	32	17	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33897570--33898095	142	3.7	142	93	0	874	33	17	20	28	1.96
33898220--33898350	50	2.6	50	81	0	136	34	25	16	24	1.95
33910132--33910316	50	3.7	50	81	2	187	23	26	22	27	2.00
33910182--33910377	50	3.8	50	81	6	203	23	28	21	26	1.99
33913794--33913841	20	2.4	20	86	6	62	39	10	2	47	1.49
33918581--33918675	25	3.8	25	83	4	95	23	27	20	29	1.98
33918572--33918691	50	2.4	49	74	9	109	26	25	19	28	1.99
33919892--33920015	66	1.9	66	87	0	185	33	18	18	29	1.95
33920568--33920611	20	2.2	20	84	8	54	61	4	15	18	1.50
33921548--33921576	15	1.9	15	100	0	58	31	13	34	20	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196