genome.fa.s25.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  42  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11605803--11605838	18	2.0	18	88	0	54	50	0	0	50	1.00
11605903--11605932	15	1.9	16	93	6	53	43	0	6	50	1.28
11605928--11605967	14	2.9	15	82	14	50	47	0	0	52	1.00
11605924--11605960	16	2.2	17	86	13	51	40	0	0	59	0.97
11606102--11606207	44	2.5	41	79	18	135	33	32	4	29	1.78
11606115--11606207	44	2.1	46	93	4	163	35	31	5	27	1.80
11606189--11606242	16	3.4	16	97	0	99	25	35	1	37	1.67
11609479--11609540	27	2.3	27	80	5	72	35	16	11	37	1.84
11637470--11637632	27	6.1	26	74	11	105	39	17	19	23	1.92
11637571--11637668	27	3.6	27	84	0	124	34	16	22	26	1.95
11637502--11637639	53	2.6	53	78	7	138	38	15	18	26	1.92
11637906--11638082	32	5.5	33	75	10	152	18	19	25	37	1.94
11637906--11638088	64	2.9	63	84	9	187	19	19	24	37	1.94
11637903--11638108	96	2.2	96	85	7	269	18	19	23	37	1.94
11638339--11638405	28	2.4	28	97	0	125	23	28	19	28	1.98
11641251--11641299	17	2.8	17	81	9	55	55	12	0	32	1.37
11644720--11644768	21	2.3	21	83	13	57	22	0	12	65	1.26
11645720--11645765	23	2.0	23	83	8	58	28	2	19	50	1.60
11646868--11646901	14	2.4	14	95	0	59	23	35	14	26	1.94
11650593--11650630	3	12.7	3	100	0	76	68	0	0	31	0.90
11654486--11654746	43	6.1	43	77	3	195	39	16	17	26	1.90
11654484--11654623	42	3.3	42	76	3	129	39	15	18	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11659338--11659428	46	2.0	47	82	6	114	41	28	5	24	1.77
11661305--11661331	14	1.9	14	100	0	54	59	0	7	33	1.25
11661305--11661338	14	2.4	14	90	0	50	58	5	5	29	1.45
11662285--11662315	7	4.4	7	100	0	62	32	12	12	41	1.81
11663514--11663569	24	2.3	23	78	6	58	76	1	16	5	1.05
11663618--11663680	31	2.1	30	82	8	74	50	3	1	44	1.27
11665791--11665820	14	2.2	14	94	5	53	33	6	20	40	1.78
11665941--11665979	20	2.0	20	94	0	69	48	2	0	48	1.15
11667238--11667302	32	2.0	32	96	0	121	52	16	3	27	1.59
11667241--11667310	32	2.4	29	86	11	90	54	17	2	25	1.57
11668878--11668924	21	2.1	21	84	7	58	61	4	8	25	1.43
11673122--11673173	24	2.2	24	85	0	68	38	3	7	50	1.50
11676716--11676751	19	1.9	18	94	5	63	30	19	0	50	1.48
11677953--11677993	22	1.9	21	95	5	73	12	4	7	75	1.16
11678257--11678313	29	2.0	29	89	6	89	52	3	0	43	1.18
11678267--11678337	37	1.9	37	82	5	90	56	2	0	40	1.14
11681694--11681768	38	2.0	38	100	0	150	37	32	9	21	1.85
11684247--11684281	18	1.9	18	94	0	61	31	20	0	48	1.50
11685207--11685264	29	2.0	29	80	12	66	41	25	1	31	1.66
11685494--11685535	22	1.9	22	90	9	68	11	4	7	76	1.15
11690517--11690568	24	2.2	24	85	0	68	38	3	7	50	1.50
11692826--11693046	51	4.3	52	80	3	236	30	27	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11692856--11693047	101	1.9	101	88	3	287	30	27	16	25	1.97
11700754--11700948	54	3.5	54	76	12	223	32	23	17	26	1.96
11700756--11701001	113	2.2	113	95	0	447	33	23	16	26	1.96
11711070--11711257	51	3.7	51	81	4	195	31	25	18	24	1.98
11713854--11713941	46	1.9	46	84	9	117	38	17	21	22	1.93
11714157--11714295	32	4.4	31	81	6	154	40	19	19	20	1.92
11714476--11714518	11	3.7	11	76	11	50	55	27	2	13	1.51
11714466--11714523	24	2.4	24	97	0	107	50	25	5	18	1.68
11714466--11714552	24	3.6	24	80	11	88	47	26	4	21	1.70
11714589--11714660	27	2.6	28	82	6	94	27	18	16	37	1.92
11714583--11714695	27	4.1	27	75	12	79	26	18	22	32	1.97
11714611--11714978	27	13.7	27	81	6	385	23	19	19	38	1.93
11716692--11716783	44	2.2	41	90	7	132	14	18	17	50	1.79
11717939--11717973	11	3.2	11	91	0	61	0	0	11	88	0.51
11718548--11718577	5	6.0	5	100	0	60	40	0	0	60	0.97
11718593--11718740	73	2.0	73	100	0	296	32	10	16	40	1.83
11720761--11720815	22	2.5	23	79	8	69	20	29	16	34	1.94
11721439--11721469	16	1.9	16	93	0	53	9	6	9	74	1.23
11730723--11730851	68	1.9	70	82	6	165	42	4	3	49	1.39
11730853--11730913	17	3.8	17	82	6	74	39	6	1	52	1.37
11745702--11745733	12	2.6	13	85	14	50	37	0	6	56	1.25
11747711--11747738	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11758377--11758440	29	2.2	29	100	0	128	39	23	12	25	1.90
11766767--11766827	30	2.0	30	100	0	122	29	9	9	50	1.67
11782659--11782699	21	2.0	21	90	0	64	14	2	2	80	0.92
11782656--11782710	16	3.6	16	80	11	62	16	1	1	80	0.90
11784792--11784831	20	2.0	20	100	0	80	35	20	20	25	1.96
11795247--11795291	23	1.9	23	81	4	54	26	4	6	62	1.39
11799343--11799439	39	2.5	38	85	8	117	56	7	6	29	1.51
11799348--11799439	13	7.2	13	71	11	82	56	7	5	30	1.50
11800677--11800726	23	2.1	24	88	3	75	8	0	14	78	0.97
11800692--11800730	19	2.1	18	86	13	53	10	0	10	79	0.94
11802282--11802324	18	2.4	17	81	14	50	20	0	30	48	1.50
11804621--11804668	18	2.8	17	73	17	53	35	8	29	27	1.86
11807767--11807831	29	2.2	30	81	10	80	56	3	3	36	1.30
11807811--11807866	15	4.1	15	71	21	50	55	0	0	44	0.99
11807813--11807885	25	2.9	25	83	2	92	58	1	0	39	1.06
11810832--11811169	44	7.8	44	69	6	134	28	24	18	28	1.98
11812471--11812522	14	3.6	14	80	14	61	15	13	0	71	1.15
11828529--11828561	11	2.8	12	86	9	50	18	9	0	72	1.10
11830156--11830209	3	18.0	3	92	0	90	66	0	1	31	1.02
11835715--11835760	24	2.0	24	86	4	67	6	17	30	45	1.73
11838801--11838904	42	2.5	42	81	6	113	15	24	17	43	1.87
11839625--11839649	13	1.9	13	100	0	50	32	4	24	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11841311--11841497	41	4.6	41	87	2	234	24	16	27	32	1.96
11848777--11848922	41	3.6	42	79	7	122	25	16	26	31	1.96
11853627--11853677	23	2.2	23	89	0	75	54	23	5	15	1.63
11854822--11854919	10	10.6	9	70	21	69	62	4	2	31	1.25
11854823--11854910	10	9.3	10	72	12	78	63	4	1	30	1.21
11854816--11854910	18	5.1	19	73	12	72	62	5	1	31	1.24
11854828--11854911	29	3.0	29	83	10	77	60	4	1	33	1.25
11854967--11855018	19	2.8	18	80	13	61	67	1	1	28	1.12
11855328--11855385	19	2.7	22	84	10	68	36	8	17	37	1.80
11855652--11855682	7	4.4	7	100	0	62	12	0	0	87	0.55
11855680--11855728	21	2.3	22	85	3	64	28	0	4	67	1.09
11857980--11858029	25	2.0	25	92	0	82	34	18	6	42	1.74
11858891--11858943	14	3.8	14	75	9	54	41	9	11	37	1.73
11859029--11859067	20	2.0	20	94	0	69	48	2	0	48	1.15
11861112--11861175	19	3.3	19	87	8	92	40	9	12	37	1.75
11861113--11861188	21	3.7	21	91	3	111	42	10	10	36	1.74
11863242--11863447	27	7.6	27	85	3	252	26	15	27	30	1.96
11863242--11863447	82	2.5	80	83	3	259	26	15	27	30	1.96
11863243--11863447	109	1.9	109	88	4	315	26	15	27	30	1.96
11871269--11871473	27	7.6	27	84	4	243	27	15	28	29	1.96
11872894--11872929	12	3.0	13	92	8	51	25	0	0	75	0.81
11872908--11872947	3	13.3	3	84	10	55	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11872892--11872947	15	3.8	15	81	15	64	30	0	0	69	0.89
11873205--11873316	51	2.2	52	80	6	131	32	6	6	55	1.50
11878191--11878224	15	2.3	15	90	10	52	76	2	20	0	0.92
11878198--11878245	17	3.0	16	82	14	55	72	4	22	0	1.01
11879491--11879817	44	7.4	44	66	13	161	30	18	24	26	1.98
11879790--11879928	44	3.2	44	68	11	131	33	16	23	26	1.95
11879782--11879959	88	2.0	88	96	0	329	32	17	23	26	1.97
11879455--11879905	132	3.4	132	91	0	697	30	18	24	26	1.98
11879635--11880102	220	2.1	220	88	0	695	31	20	23	25	1.98
11879520--11879928	44	9.3	42	66	13	123	31	17	24	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196