genome.fa.s25.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  36  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9919674--9919870	98	2.0	98	94	0	349	37	25	9	27	1.87
9923528--9923766	113	2.1	113	81	0	264	39	17	13	29	1.88
9925301--9925381	25	3.2	25	84	6	101	33	20	20	24	1.97
9925293--9925405	50	2.3	50	82	0	136	32	20	20	26	1.97
9931114--9931146	16	2.1	16	100	0	66	24	6	21	48	1.72
9931253--9931320	34	2.0	34	94	5	120	26	4	30	38	1.76
9934121--9934190	31	2.3	31	76	0	77	47	8	1	42	1.43
9936425--9936458	14	2.5	14	95	4	61	50	35	0	14	1.44
9938894--9938931	20	1.9	20	94	0	67	65	18	0	15	1.27
9942502--9942548	18	2.6	18	89	0	67	29	23	27	19	1.98
9942497--9942557	18	3.3	18	79	6	52	34	24	22	18	1.96
9944811--9944848	18	2.2	18	90	9	62	71	2	5	21	1.19
9944903--9945047	73	2.0	73	94	0	254	35	15	6	42	1.74
9951340--9951510	85	2.0	85	95	0	306	37	20	8	33	1.82
9953402--9953450	25	1.9	25	84	12	64	59	8	4	28	1.45
9958807--9958941	41	3.4	40	76	9	152	34	24	16	25	1.95
9959818--9959878	4	13.8	4	74	19	50	3	21	6	68	1.27
9959876--9959957	36	2.3	34	85	6	101	45	4	1	48	1.31
9967725--9967825	43	2.3	43	87	0	139	24	17	22	34	1.96
9973434--9973511	31	2.5	31	85	0	93	32	7	16	43	1.76
9973632--9973927	43	6.9	42	88	6	371	27	15	23	32	1.95
9973634--9973954	129	2.5	128	85	3	410	28	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9982729--9982771	21	2.0	21	90	0	68	39	27	4	27	1.76
9983789--9983816	2	14.0	2	100	0	56	50	0	50	0	1.00
9984386--9984412	6	4.5	6	100	0	54	14	0	48	37	1.45
9996902--9996926	7	3.6	7	100	0	50	60	0	0	40	0.97
10002142--10002174	11	2.9	12	86	13	52	66	0	0	33	0.92
10008824--10010789	987	2.0	986	98	0	3790	27	22	21	28	1.99
10013724--10013805	42	2.0	42	87	4	121	50	10	3	35	1.55
10013957--10013993	10	3.6	10	88	3	56	0	29	0	70	0.88
10014792--10014842	21	2.4	21	83	0	66	27	7	33	31	1.85
10018520--10018708	94	2.0	92	83	2	234	36	8	22	32	1.85
10020027--10020070	21	2.1	21	95	0	79	9	13	31	45	1.75
10020813--10020877	30	2.2	30	94	0	112	29	27	3	40	1.71
10022112--10022398	150	1.9	150	89	1	450	30	19	19	29	1.97
10023199--10023254	25	2.3	24	79	11	69	44	0	3	51	1.18
10023204--10023251	25	1.9	25	87	8	71	37	0	4	58	1.18
10026311--10026580	125	2.2	126	89	2	409	31	18	15	34	1.92
10026715--10026787	21	3.5	21	69	14	69	47	23	0	28	1.52
10033147--10033277	57	2.3	57	84	2	156	41	4	19	34	1.72
10034696--10034747	21	2.4	21	75	15	61	40	9	1	48	1.47
10042307--10042356	21	2.4	21	78	15	68	40	10	2	48	1.48
10042442--10042561	41	2.9	40	83	2	132	30	24	18	27	1.98
10045551--10045595	18	2.5	18	81	0	54	35	4	0	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10045657--10045727	30	2.4	30	87	0	106	50	15	5	28	1.66
10047787--10047814	14	2.0	14	100	0	56	21	28	21	28	1.99
10060060--10060087	14	2.0	14	100	0	56	50	0	35	14	1.43
10062677--10062713	5	7.2	5	87	6	56	18	2	2	75	1.04
10062680--10062710	16	1.9	16	93	0	53	19	3	3	74	1.10
10063809--10063848	15	2.7	15	84	0	53	37	5	2	55	1.35
10068898--10068931	15	2.3	15	90	10	52	88	0	11	0	0.52
10068898--10068926	9	3.3	9	95	4	51	89	0	10	0	0.48
10068928--10068961	9	3.8	9	85	14	52	79	0	0	20	0.73
10068930--10068961	12	2.7	12	95	0	55	78	0	0	21	0.76
10070032--10070155	44	2.8	44	86	2	160	31	19	21	27	1.97
10080386--10080495	49	2.4	48	83	7	138	31	20	18	30	1.96
10080335--10080954	44	13.7	44	74	11	353	31	20	20	26	1.97
10080429--10081129	317	2.2	317	91	0	1116	31	21	20	26	1.98
10081032--10081133	44	2.3	44	93	0	177	31	27	20	20	1.98
10080440--10081133	273	2.5	272	78	5	632	31	21	21	26	1.98
10080853--10081112	141	1.8	141	82	4	328	30	20	23	25	1.98
10082281--10082310	14	2.1	14	93	0	51	40	6	3	50	1.45
10082907--10083015	41	2.7	41	85	2	148	26	27	19	26	1.99
10085878--10085917	15	2.7	15	84	0	53	37	5	2	55	1.35
10093222--10093253	15	2.1	15	100	0	64	18	6	6	68	1.32
10096496--10096539	22	2.0	22	100	0	88	40	22	13	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10102637--10102698	31	2.0	31	87	6	90	38	4	12	43	1.64
10105048--10105098	25	2.0	25	84	3	66	35	7	5	50	1.55
10105351--10105838	161	3.0	164	89	3	759	25	17	17	38	1.92
10105864--10105888	5	5.0	5	100	0	50	40	0	0	60	0.97
10105884--10105927	22	2.0	22	90	0	70	31	2	4	61	1.28
10107912--10107981	31	2.2	32	89	2	106	38	8	8	44	1.66
10113485--10113568	41	2.0	41	95	0	150	34	4	21	39	1.74
10114921--10114988	26	2.6	26	90	2	100	61	4	1	32	1.24
10123978--10124118	50	2.7	50	82	10	151	29	19	28	22	1.98
10124032--10124178	50	2.9	51	81	2	172	29	21	27	20	1.98
10124032--10124217	50	3.7	50	80	5	155	30	21	26	21	1.98
10125138--10125480	124	2.8	124	93	0	571	28	14	22	34	1.94
10128515--10128621	19	5.7	20	76	21	124	50	2	8	38	1.47
10128505--10128632	37	3.5	37	97	0	247	50	3	7	39	1.45
10128697--10128776	23	3.5	22	93	3	124	21	1	32	45	1.60
10128628--10128753	29	4.6	29	75	15	140	23	0	30	45	1.53
10128641--10128779	52	2.6	53	74	21	123	23	0	31	44	1.58
10128631--10128730	29	3.4	29	85	8	141	21	0	33	46	1.52
10129272--10129312	18	2.3	18	86	0	64	41	4	31	21	1.74
10129966--10129991	7	3.7	7	100	0	52	57	15	0	26	1.38
10131170--10131217	22	2.2	22	96	0	87	43	0	31	25	1.55
10131131--10131297	73	2.3	73	93	1	282	43	1	28	26	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10131240--10131295	22	2.5	22	85	2	76	39	1	32	26	1.67
10131280--10131312	10	3.0	11	86	13	50	45	0	36	18	1.49
10137486--10137526	17	2.4	17	91	4	64	21	19	0	58	1.39
10143692--10143723	5	6.6	5	92	7	57	62	0	0	37	0.95
10151570--10151610	20	2.0	22	85	9	59	41	2	2	53	1.27
10152036--10152062	3	9.0	3	100	0	54	66	0	0	33	0.92
10154706--10154781	28	2.7	27	80	6	80	59	0	2	38	1.12
10154757--10154828	18	3.8	19	81	9	76	63	0	4	31	1.13
10154757--10154814	9	6.3	9	80	9	64	62	0	3	34	1.12
10154770--10154826	19	3.1	19	80	7	55	66	0	3	29	1.08
10155135--10155233	27	3.6	27	74	15	87	29	3	4	63	1.27
10158999--10159062	30	2.1	30	97	0	119	29	0	0	70	0.88
10170609--10170693	11	7.7	11	72	17	61	5	18	2	72	1.15
10179948--10180011	28	2.4	25	80	12	65	59	4	1	34	1.28
10186261--10186312	18	2.7	20	74	17	56	36	3	0	59	1.16
10186697--10186918	111	2.0	111	99	0	435	39	14	11	33	1.83
10191606--10191655	26	1.9	26	84	8	66	56	20	14	10	1.66
10193598--10193797	41	4.9	41	83	1	240	29	27	20	23	1.99
10193564--10193797	82	2.9	81	83	3	281	28	26	20	23	1.99
10196510--10196571	6	10.8	6	89	5	76	19	25	1	53	1.54
10196498--10196571	12	6.7	11	82	13	82	18	24	1	55	1.51
10196501--10196571	28	2.6	29	84	6	94	19	25	1	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10196563--10196612	20	2.5	20	81	12	59	26	10	0	64	1.25
10196566--10196612	21	2.3	19	82	13	58	25	10	0	63	1.26
10196594--10196635	15	2.7	15	85	10	50	16	11	2	69	1.29
10196681--10196732	19	2.7	19	90	0	77	34	15	1	48	1.56
10196716--10196800	23	3.5	23	76	14	98	31	15	0	52	1.43
10196790--10196828	19	2.1	18	85	4	51	23	7	0	69	1.14
10197222--10197324	22	4.9	21	78	12	97	21	17	0	60	1.42
10197226--10197324	17	5.9	16	79	13	83	21	18	1	59	1.43
10197222--10197307	41	2.1	41	86	4	120	20	16	1	61	1.40
10197222--10197324	5	19.8	5	78	12	93	21	17	0	60	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196