genome.fa.s25.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  156  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45844839--45844911	32	2.3	31	95	4	128	38	8	19	34	1.81
45848011--45848071	27	2.3	27	82	5	70	27	9	29	32	1.89
45851898--45851922	13	1.9	13	100	0	50	12	0	0	88	0.53
45857474--45857511	19	2.0	19	89	0	58	36	5	2	55	1.37
45858148--45858206	31	1.9	31	82	6	75	61	8	8	22	1.52
45875199--45875237	18	2.2	17	86	13	53	33	0	20	46	1.51
45875465--45875561	23	4.2	23	90	0	140	22	19	27	29	1.98
45876970--45877072	51	2.0	51	90	3	163	41	6	6	44	1.57
45878707--45878746	21	1.9	21	84	0	53	50	12	0	37	1.41
45882871--45882939	34	2.0	34	97	0	129	36	14	21	27	1.93
45886637--45886753	45	2.6	44	79	4	135	44	12	19	23	1.85
45886857--45886954	27	3.6	27	81	0	97	38	15	24	21	1.92
45886854--45886969	54	2.1	54	76	6	119	40	15	23	20	1.91
45890139--45890258	32	3.8	32	81	4	136	35	8	16	40	1.79
45892845--45893021	30	5.8	30	85	2	210	32	9	18	40	1.82
45899553--45899830	30	8.9	30	81	7	304	31	8	17	41	1.81
45899553--45899858	94	3.2	93	85	5	384	31	8	17	42	1.80
45899553--45899830	60	4.5	61	83	6	335	31	8	17	41	1.81
45902923--45902966	12	3.8	11	82	8	52	50	15	15	18	1.79
45902922--45902951	11	2.6	12	89	10	53	53	16	13	16	1.73
45906718--45906772	16	3.4	16	87	0	83	38	5	25	30	1.79
45906925--45907061	58	2.4	58	83	4	179	52	2	1	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45911692--45911729	12	3.2	12	81	3	51	60	0	0	39	0.97
45911899--45911977	22	3.7	22	77	14	76	50	3	8	36	1.52
45911890--45911957	21	3.3	21	76	15	63	50	2	10	36	1.52
45911869--45911982	41	2.7	43	77	15	114	51	5	9	33	1.57
45913193--45913246	17	3.4	17	67	27	55	14	0	29	55	1.40
45913185--45913245	30	2.0	30	100	0	122	16	0	32	50	1.45
45915773--45915809	19	2.0	18	89	5	56	24	24	24	27	2.00
45916162--45916211	24	2.1	24	96	0	91	48	18	18	16	1.82
45924660--45924717	30	1.9	30	89	0	89	41	3	24	31	1.71
45924929--45924960	13	2.5	13	94	0	55	31	0	12	56	1.37
45925054--45925301	50	4.8	51	84	5	288	26	24	28	20	1.99
45925054--45925302	105	2.4	102	86	7	344	26	24	28	20	1.99
45927230--45927628	197	2.0	199	98	1	766	33	15	26	24	1.95
45932425--45932479	28	1.9	29	85	3	76	38	3	25	32	1.73
45932690--45932721	13	2.5	13	94	0	55	31	0	12	56	1.37
45932816--45933057	50	4.7	50	84	6	290	26	24	28	19	1.99
45932816--45933065	100	2.4	104	87	6	357	26	24	28	20	1.99
45934020--45934088	33	2.1	33	94	5	122	39	13	15	31	1.86
45956206--45956479	110	2.7	99	81	12	288	42	14	15	27	1.86
45956307--45956564	111	2.3	111	87	5	382	39	14	15	30	1.87
45961718--45961754	12	2.9	13	84	15	51	51	0	0	48	1.00
45962274--45962322	20	2.4	22	80	10	59	42	20	6	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45964760--45964804	23	2.0	23	91	4	74	46	17	4	31	1.68
45964757--45964812	22	2.6	21	86	8	76	44	17	3	33	1.66
45969883--45969940	22	2.7	21	79	10	62	44	17	3	34	1.65
45973202--45973255	18	3.0	18	80	0	63	42	5	16	35	1.72
45978113--45978150	18	2.2	18	86	9	53	71	2	5	21	1.19
45982647--45983235	220	2.7	218	90	4	896	26	15	12	45	1.82
45992680--45992709	15	2.0	15	100	0	60	33	0	6	60	1.23
46005006--46005074	29	2.3	29	80	9	77	47	10	14	27	1.76
46006072--46006128	21	2.8	20	82	15	64	59	1	0	38	1.08
46006089--46006128	19	2.0	21	85	9	57	62	2	0	35	1.09
46006299--46006352	26	2.0	28	85	10	76	62	1	0	35	1.06
46007239--46007291	16	3.3	16	76	10	63	35	24	5	33	1.79
46008462--46008506	17	2.6	17	82	0	54	2	17	4	75	1.07
46010429--46010525	33	2.8	33	84	7	106	37	22	10	29	1.87
46010739--46010894	41	3.8	41	89	6	226	27	22	21	28	1.99
46018063--46018160	33	2.9	33	84	7	108	36	22	10	30	1.87
46018375--46018530	41	3.8	41	89	6	226	27	22	21	28	1.99
46025097--46025135	19	2.1	19	85	9	53	35	7	2	53	1.43
46027600--46027641	16	2.6	17	82	17	54	64	2	0	33	1.07
46028347--46028398	27	2.0	26	88	3	77	25	17	11	46	1.81
46028270--46028674	224	1.8	223	88	2	616	37	15	7	39	1.76
46033708--46033777	24	2.9	25	72	10	65	50	14	4	31	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46034567--46034622	23	2.5	22	78	16	60	71	3	17	7	1.23
46039208--46039280	35	2.1	35	100	0	146	34	10	12	42	1.78
46040387--46040411	2	12.5	2	100	0	50	48	0	0	52	1.00
46041073--46041131	29	2.0	30	86	3	84	28	6	15	49	1.70
46041519--46041633	58	2.0	58	100	0	230	32	6	15	45	1.73
46041666--46041690	13	1.9	13	100	0	50	0	16	0	84	0.63
46042457--46042497	21	1.9	22	90	5	66	60	2	0	36	1.10
46045147--46045263	41	2.8	42	81	10	143	32	28	19	19	1.96
46045302--46045460	64	2.4	67	83	7	191	42	15	7	34	1.76
46045487--46045609	58	2.1	58	82	5	142	42	15	4	38	1.66
46049593--46049620	10	2.8	10	100	0	56	42	7	0	50	1.30
46053189--46053310	41	2.8	45	85	8	146	29	26	18	26	1.98
46053162--46053310	41	3.5	44	76	14	141	27	27	18	26	1.98
46053189--46053321	45	3.0	44	81	13	150	31	25	17	25	1.97
46056028--46056081	19	2.8	21	72	16	53	35	22	3	38	1.72
46056904--46057196	110	2.7	109	89	4	428	34	19	14	31	1.92
46057326--46057365	18	2.2	18	86	8	55	75	5	0	20	0.99
46057682--46057710	14	2.0	15	93	6	51	62	6	0	31	1.22
46057943--46058031	3	30.0	3	70	15	60	61	1	5	31	1.26
46058010--46058074	21	3.2	21	70	12	73	66	1	9	23	1.29
46058021--46058082	18	3.3	18	74	12	70	62	3	11	22	1.42
46057983--46058081	39	2.5	39	93	3	162	62	2	10	25	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46067564--46068147	45	12.8	45	77	6	539	33	16	20	29	1.95
46067564--46068107	96	5.9	93	79	9	499	34	16	20	29	1.95
46067564--46068201	141	4.6	138	77	10	588	33	17	19	29	1.95
46067567--46068102	186	2.9	185	84	1	682	33	16	20	29	1.95
46067564--46068188	230	2.7	233	81	6	691	33	17	19	29	1.95
46072027--46072081	22	2.4	22	80	19	60	60	1	5	32	1.30
46072082--46072168	4	22.0	4	68	11	54	70	4	21	3	1.21
46072531--46072614	41	2.0	42	84	6	109	27	19	20	33	1.96
46072873--46072901	14	2.0	15	93	6	51	27	3	20	48	1.66
46084614--46084640	3	9.0	3	100	0	54	0	33	0	66	0.92
46087055--46087094	21	1.9	21	90	10	64	37	0	17	45	1.49
46092390--46092440	15	3.3	15	77	20	52	37	0	1	60	1.08
46104500--46104531	6	5.3	6	96	0	55	18	18	34	28	1.95
46107459--46107642	93	2.0	93	95	0	332	19	17	23	39	1.92
46109817--46109843	13	2.1	13	100	0	54	48	14	14	22	1.81
46112027--46112064	18	2.1	18	100	0	76	26	26	10	36	1.89
46115201--46115242	14	3.2	14	87	9	54	59	14	7	19	1.57
46116292--46116318	3	9.0	3	100	0	54	33	0	66	0	0.92
46119246--46119291	3	15.3	3	100	0	92	32	0	0	67	0.91
46134429--46134485	22	2.8	21	82	10	73	36	21	7	35	1.80
46145406--46145573	38	4.4	38	85	4	212	36	32	16	14	1.89
46145406--46145573	77	2.2	76	84	3	221	36	32	16	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46146898--46146937	20	2.0	20	95	0	71	42	20	10	27	1.83
46146886--46146952	34	1.9	35	84	3	91	41	17	8	31	1.81
46150812--46150989	51	3.5	51	84	2	234	23	17	28	31	1.97
46150811--46151010	102	2.0	101	85	4	269	24	17	27	31	1.97
46151000--46151088	45	2.0	45	90	0	142	25	16	23	33	1.96
46159268--46159302	15	2.2	16	90	5	54	37	0	14	48	1.44
46162619--46162654	13	2.8	13	91	0	54	33	8	2	55	1.44
46162650--46162688	16	2.5	16	83	4	53	46	0	7	46	1.31
46162626--46162767	61	2.3	61	80	4	162	39	4	8	47	1.56
46162759--46162808	24	2.1	24	85	7	66	46	0	0	54	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196