genome.fa.s25.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  102  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30502057--30502097	20	2.0	20	100	0	82	39	4	14	41	1.67
30504687--30504726	21	1.9	21	89	0	62	42	15	2	40	1.60
30515880--30515941	31	2.1	30	82	17	76	45	8	17	29	1.77
30517467--30517496	16	1.9	16	93	6	53	50	20	0	30	1.49
30519515--30519636	50	2.4	50	86	0	163	25	25	28	20	1.99
30527056--30527293	50	4.7	50	78	9	180	29	21	26	22	1.99
30539355--30539439	42	2.0	42	97	0	161	21	14	12	51	1.75
30542319--30542347	12	2.3	13	94	5	51	65	6	6	20	1.40
30545440--30545520	25	3.2	25	77	6	76	28	23	23	24	2.00
30547885--30547982	27	3.5	28	90	2	135	26	13	28	31	1.94
30547913--30547995	27	3.0	27	87	5	96	30	12	25	32	1.92
30547885--30547997	28	4.0	27	83	6	100	29	12	25	32	1.92
30576300--30576352	27	2.0	27	85	7	72	45	18	18	16	1.86
30582427--30582611	101	1.8	101	88	5	284	24	17	28	29	1.97
30582421--30582609	51	3.8	48	77	6	175	24	16	29	29	1.97
30593913--30593947	17	2.1	17	100	0	70	51	8	17	22	1.72
30597755--30597794	19	2.1	19	85	0	53	15	2	15	67	1.34
30604577--30604841	103	2.6	104	90	3	417	29	29	20	19	1.97
30605169--30605233	30	2.2	29	81	8	76	30	27	6	35	1.81
30605176--30605233	30	1.9	30	85	0	80	31	24	6	37	1.82
30613682--30613867	40	4.7	40	88	5	252	24	22	27	26	2.00
30613735--30613900	80	2.1	79	86	5	228	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30626020--30626150	41	3.2	40	79	5	118	25	12	27	33	1.93
30630496--30630522	14	1.9	14	100	0	54	22	7	25	44	1.79
30631211--30631269	22	2.7	22	97	2	111	57	5	13	23	1.56
30633377--30633407	15	2.1	15	93	0	53	22	32	19	25	1.97
30659178--30659257	22	3.6	22	79	0	88	40	46	1	12	1.50
30659173--30659257	11	7.7	11	72	15	68	41	45	1	11	1.48
30667439--30667529	35	2.6	35	82	0	110	36	14	18	30	1.91
30670697--30670743	24	1.9	25	83	12	62	42	8	8	40	1.66
30670786--30670843	29	2.0	29	89	0	89	34	12	15	37	1.85
30671583--30671708	35	3.6	35	82	4	130	39	15	16	28	1.89
30673749--30673873	48	2.6	48	83	7	150	22	15	22	40	1.91
30675074--30675110	15	2.6	15	87	8	51	64	21	13	0	1.27
30676792--30676990	106	1.9	106	92	0	335	31	20	16	32	1.95
30677064--30677106	20	2.2	20	95	0	77	48	23	4	23	1.69
30679197--30679301	53	2.0	54	88	9	162	40	20	19	20	1.92
30679193--30679404	80	2.6	81	79	7	193	34	21	21	22	1.97
30679288--30679404	54	2.2	54	86	4	157	30	18	24	25	1.98
30679189--30679388	27	7.4	27	78	5	165	36	21	20	22	1.96
30679428--30679494	23	2.9	23	79	2	71	19	5	25	49	1.71
30679574--30679638	27	2.4	27	80	14	73	20	24	21	33	1.97
30679592--30679644	27	2.0	27	81	7	63	22	26	20	30	1.98
30679626--30679685	26	2.3	26	82	0	75	20	20	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30679685--30679884	32	6.3	32	82	5	183	19	19	23	39	1.93
30679682--30679873	96	2.0	96	80	8	212	19	18	22	39	1.93
30682709--30682738	3	10.3	3	92	7	53	66	0	33	0	0.92
30689832--30689869	20	2.0	20	89	5	60	47	10	13	28	1.76
30690874--30691036	74	2.2	72	86	9	224	26	34	0	38	1.61
30690927--30690975	19	2.5	19	90	3	71	26	30	0	42	1.55
30693647--30693677	16	1.9	16	100	0	62	29	0	6	64	1.18
30699477--30699592	61	1.9	58	83	8	144	40	5	3	50	1.41
30735239--30735285	17	2.6	17	86	6	67	48	0	0	51	1.00
30735237--30735287	24	2.1	24	85	7	68	47	0	0	52	1.00
30735259--30735376	61	2.0	58	85	5	155	43	2	4	50	1.35
30746027--30746059	16	2.1	16	88	11	50	39	6	15	39	1.72
30747507--30747563	30	1.9	30	85	7	80	24	22	28	24	2.00
30748992--30749016	13	1.9	13	100	0	50	40	8	20	32	1.81
30753169--30753353	79	2.3	82	81	9	222	25	27	22	24	2.00
30753150--30753353	40	5.1	40	80	8	220	25	27	22	25	2.00
30768738--30768777	17	2.4	17	86	0	53	35	32	17	15	1.91
30774098--30774155	5	11.6	5	79	0	62	24	36	1	37	1.66
30774098--30774155	15	3.9	15	93	0	80	24	36	1	37	1.66
30785588--30785734	74	2.0	74	84	0	195	33	20	14	31	1.92
30795566--30795662	33	2.9	33	81	6	106	19	24	10	45	1.81
30798544--30798615	27	2.7	27	82	10	85	40	18	19	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30798882--30798956	32	2.3	32	81	0	87	24	18	21	36	1.95
30798944--30799029	32	2.7	32	77	0	82	18	18	24	38	1.93
30799044--30799090	22	2.1	22	84	0	58	19	17	17	46	1.84
30813446--30813495	26	1.9	26	84	8	66	34	24	26	16	1.95
30813943--30813982	5	7.8	5	83	5	53	42	17	0	40	1.49
30825229--30825264	15	2.2	17	90	9	58	5	27	0	66	1.13
30825826--30825873	17	2.9	17	87	3	71	25	0	20	54	1.45
30825826--30825869	8	5.2	9	81	13	58	25	0	22	52	1.48
30827093--30827277	46	4.0	46	92	1	300	35	8	25	29	1.86
30831625--30831823	48	4.1	48	91	0	254	24	28	20	27	1.99
30831675--30831839	48	3.4	48	94	0	276	23	27	21	27	1.99
30840270--30840301	6	5.3	6	100	0	64	37	46	0	15	1.46
30840707--30840774	21	3.2	21	70	0	73	27	13	35	23	1.92
30840707--30840789	42	2.0	42	95	0	148	27	19	32	20	1.97
30840792--30840843	21	2.5	21	78	6	52	26	15	38	19	1.91
30845438--30845472	12	2.9	12	82	0	52	51	31	0	17	1.45
30848427--30848461	14	2.4	15	90	4	54	2	14	0	82	0.77
30855891--30856058	46	3.7	46	75	6	142	29	22	18	29	1.97
30855891--30856068	92	1.9	92	81	2	214	29	23	18	28	1.98
30860362--30860392	9	3.4	9	90	0	53	25	12	22	38	1.90
30860447--30860482	9	4.0	9	85	0	54	44	11	11	33	1.75
30860531--30860591	30	2.0	31	90	3	97	19	44	0	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30861732--30861765	13	2.6	13	90	0	50	41	0	11	47	1.40
30870271--30870325	27	2.0	27	82	10	67	47	1	9	41	1.46
30871705--30871743	19	2.1	19	100	0	78	25	28	25	20	1.99
30873476--30873508	17	2.0	17	88	5	50	24	30	0	45	1.53
30873889--30873926	4	9.8	4	88	5	60	73	0	26	0	0.83
30875037--30875084	19	2.6	18	83	9	60	54	0	22	22	1.45
30876502--30876595	49	1.9	49	95	0	170	42	5	25	26	1.76
30884593--30884730	48	2.8	50	77	4	154	28	15	21	34	1.95
30894073--30894098	10	2.6	10	100	0	52	23	7	0	69	1.14
30894399--30894442	23	1.9	22	82	17	54	36	25	0	38	1.56
30894541--30894727	51	3.7	49	78	7	205	31	27	16	25	1.97
30894537--30894723	101	1.8	101	88	3	286	31	27	16	24	1.96
30896697--30896742	23	2.0	24	86	4	67	50	4	6	39	1.48
30907024--30907090	33	2.0	33	82	5	82	50	8	11	28	1.69
30907327--30907365	14	2.8	14	80	0	51	51	0	5	43	1.24
30907338--30907406	28	2.6	28	72	25	69	50	0	1	47	1.09
30910059--30910279	43	5.2	43	85	0	273	25	28	17	28	1.97
30910625--30910673	21	2.3	21	86	6	64	10	38	16	34	1.82
30910635--30910800	87	1.9	87	91	2	271	13	28	18	39	1.89
30910710--30910756	21	2.2	21	84	0	58	4	44	17	34	1.68
30912562--30912599	19	2.0	19	89	0	58	44	2	15	36	1.61
30912601--30912644	20	2.2	20	95	0	79	38	6	2	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30912621--30912714	32	2.7	37	83	16	153	38	3	7	51	1.46
30913006--30913094	30	3.0	30	72	6	81	43	5	8	41	1.59
30915384--30915425	19	2.2	19	86	0	57	23	2	45	28	1.66
30916428--30916467	21	1.9	21	84	0	53	52	30	2	15	1.55
30916795--30916823	14	2.0	15	93	6	51	34	31	6	27	1.83
30917464--30917795	114	2.9	113	83	5	402	27	24	22	25	2.00
30920763--30920839	29	2.7	29	93	4	129	20	33	6	38	1.79
30927075--30927202	41	3.2	40	91	4	211	30	26	20	22	1.98
30930276--30930307	16	2.0	16	100	0	64	43	12	6	37	1.68
30948090--30948216	27	4.7	27	81	3	112	33	14	24	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196