genome.fa.s25.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  104  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31357832--31358043	43	5.0	43	81	9	274	33	25	18	23	1.97
31358055--31358346	51	5.8	51	75	10	285	31	27	17	23	1.97
31358053--31358338	101	2.8	101	93	1	466	31	27	17	23	1.97
31358049--31358372	152	2.1	151	78	7	336	30	28	16	24	1.97
31368665--31368704	13	3.2	12	82	10	53	62	0	2	35	1.09
31378365--31378427	22	2.9	22	90	0	99	28	4	46	20	1.71
31379328--31379418	14	6.4	14	68	20	64	36	41	1	20	1.60
31379358--31379425	7	9.6	7	73	1	55	39	41	0	19	1.51
31379365--31379425	21	2.9	21	97	0	113	40	40	0	18	1.50
31379431--31379459	15	1.9	15	100	0	58	44	34	0	20	1.52
31382461--31382651	61	3.2	61	72	11	221	42	1	4	51	1.32
31382401--31382686	120	2.4	120	98	0	554	42	1	3	53	1.25
31382626--31382710	28	3.0	28	75	13	77	41	0	1	57	1.06
31382617--31382711	27	3.5	26	69	21	70	42	0	1	56	1.06
31382825--31382918	44	2.1	44	88	4	134	35	28	6	29	1.82
31382900--31382935	16	2.2	16	95	0	63	25	33	2	38	1.70
31383178--31383219	14	3.0	14	85	0	66	33	50	0	16	1.46
31383178--31383233	28	2.0	28	89	0	85	33	48	0	17	1.48
31383472--31383527	14	3.9	14	80	13	60	32	41	1	25	1.66
31383496--31383584	14	6.2	14	72	17	58	38	35	0	25	1.57
31383496--31383560	21	3.0	22	80	14	73	36	38	0	24	1.56
31383512--31383585	28	2.6	27	80	6	85	39	35	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31383789--31383843	25	2.2	26	84	9	71	21	7	7	63	1.44
31383927--31384278	123	2.9	122	85	3	465	31	27	17	23	1.97
31383927--31384292	41	8.9	41	80	2	385	31	28	17	22	1.97
31384446--31384472	12	2.2	12	100	0	54	37	22	25	14	1.93
31387278--31387486	80	2.6	78	85	5	253	26	20	27	25	1.99
31387239--31387463	40	5.7	40	85	5	287	24	21	28	25	1.99
31387239--31387496	119	2.2	119	81	6	292	25	21	27	25	1.99
31400422--31400546	61	2.0	61	81	0	142	41	16	7	35	1.75
31401556--31401903	122	2.8	124	91	1	585	29	15	21	33	1.95
31404992--31405107	53	2.2	53	96	1	216	47	12	6	33	1.67
31405171--31405198	6	4.7	6	100	0	56	14	0	50	35	1.43
31405148--31405227	41	2.0	41	100	0	160	23	0	33	42	1.55
31405183--31405241	29	2.0	29	96	0	109	25	0	30	44	1.55
31405220--31405387	43	3.6	43	70	21	147	33	0	19	47	1.54
31405185--31405680	101	4.9	101	97	0	938	31	0	21	46	1.54
31405155--31405324	72	2.4	70	79	7	200	30	0	24	44	1.58
31405263--31405345	29	2.9	28	85	5	121	28	1	22	46	1.59
31405364--31405445	29	2.8	29	94	0	146	26	0	24	48	1.51
31405364--31405547	29	6.9	28	71	23	139	30	0	22	47	1.52
31405263--31405544	130	2.2	129	81	7	313	31	0	21	46	1.55
31405393--31405526	72	1.9	72	90	3	216	30	0	23	46	1.53
31405465--31405547	29	2.9	28	94	5	148	28	0	22	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31405566--31405645	29	2.8	29	96	0	142	28	0	25	46	1.53
31405494--31405627	72	1.9	72	92	3	225	32	0	22	45	1.53
31406140--31406174	18	1.9	18	94	0	61	34	8	31	25	1.86
31406825--31406849	7	3.6	7	100	0	50	60	12	0	28	1.32
31407929--31407994	10	6.5	10	75	3	60	65	0	0	34	0.93
31407929--31407993	31	2.1	31	100	0	130	66	0	0	33	0.92
31407929--31407980	21	2.5	20	75	6	59	69	0	0	30	0.89
31407996--31408107	51	2.2	51	91	0	179	42	1	26	28	1.65
31408084--31408129	22	2.1	22	100	0	92	41	0	32	26	1.56
31421016--31421053	18	2.1	18	85	9	51	44	0	0	55	0.99
31432015--31432054	19	2.1	19	100	0	80	40	20	20	20	1.92
31436256--31436613	177	2.0	177	95	0	635	27	12	22	37	1.91
31439284--31439322	21	1.9	21	85	15	55	48	5	12	33	1.63
31442889--31442918	16	1.9	16	93	6	53	50	20	0	30	1.49
31443384--31443413	16	1.9	16	93	6	53	20	23	0	56	1.42
31454837--31455181	115	3.0	114	89	1	528	39	18	21	20	1.92
31456525--31456696	45	3.9	45	82	7	208	23	15	25	36	1.93
31483938--31483979	16	2.6	16	88	0	66	57	2	7	33	1.39
31485711--31485752	6	6.8	6	86	13	59	19	2	0	78	0.86
31485711--31485752	13	3.4	12	84	15	59	19	2	0	78	0.86
31485767--31486367	299	2.0	299	97	0	1121	28	12	19	39	1.88
31487030--31487069	21	1.9	21	85	10	55	47	20	7	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31490193--31490237	22	2.0	22	83	12	56	31	15	4	48	1.65
31491188--31491324	68	2.0	68	95	0	247	35	22	16	25	1.95
31495610--31495656	25	2.0	24	83	8	60	59	2	2	36	1.21
31503067--31503125	25	2.5	22	83	8	73	69	6	11	11	1.36
31508156--31508187	15	2.1	15	100	0	64	31	6	0	62	1.20
31508865--31508948	18	4.6	18	73	7	62	20	22	27	29	1.98
31510989--31511027	16	2.3	19	79	20	50	43	5	5	46	1.48
31511276--31511450	75	2.3	76	83	5	228	47	8	10	33	1.68
31511458--31511505	24	2.0	24	88	4	71	35	10	8	45	1.68
31511341--31511852	77	6.8	77	74	15	333	42	8	9	38	1.68
31512272--31512405	17	7.9	17	69	14	89	30	0	3	65	1.10
31512256--31512416	49	3.2	49	90	3	232	31	0	3	64	1.13
31512295--31512377	21	3.6	23	68	17	64	30	0	2	67	1.03
31517621--31517769	75	2.0	77	80	5	169	46	8	10	34	1.68
31517974--31518006	16	2.1	16	94	0	57	54	0	0	45	0.99
31520225--31520447	69	3.3	69	87	2	308	39	6	20	33	1.78
31522057--31522101	13	3.4	13	81	3	54	20	4	0	75	0.97
31530934--31531003	20	3.6	19	73	9	61	40	0	1	58	1.07
31531037--31531083	24	2.0	24	82	0	58	46	4	8	40	1.54
31532755--31532780	11	2.4	11	100	0	52	38	0	0	61	0.96
31532763--31532801	19	2.0	19	90	5	60	35	0	0	64	0.94
31537094--31537336	50	4.8	49	76	6	175	23	27	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31543490--31543544	24	2.2	25	83	3	76	45	1	29	23	1.63
31544027--31544068	20	2.1	20	82	8	50	40	4	16	38	1.70
31548337--31548392	28	2.0	28	85	0	76	53	12	3	30	1.55
31548680--31548713	4	8.5	4	93	0	59	52	0	0	47	1.00
31564257--31564297	3	13.7	3	100	0	82	34	0	34	31	1.58
31568182--31568223	18	2.3	18	84	12	50	14	21	38	26	1.91
31568446--31568617	27	6.4	27	90	0	247	44	20	16	17	1.86
31569079--31569144	34	1.9	34	84	6	89	28	22	21	27	1.99
31571162--31571201	20	2.0	21	90	5	64	50	0	30	20	1.49
31571188--31571231	23	1.9	23	86	9	63	36	0	27	36	1.57
31571516--31571552	9	4.1	9	85	0	56	29	10	10	48	1.72
31580471--31580514	22	2.0	23	86	4	63	52	6	0	40	1.28
31582704--31582958	138	1.9	137	82	2	323	32	22	21	23	1.98
31589358--31589382	2	12.5	2	100	0	50	52	0	48	0	1.00
31595649--31595684	17	2.1	18	89	5	56	66	11	0	22	1.22
31609877--31609937	27	2.1	29	85	8	81	34	37	4	22	1.76
31611138--31611181	16	2.8	16	79	3	54	20	40	20	18	1.91
31617872--31617926	26	2.1	26	86	0	74	23	16	16	43	1.87
31619159--31619202	23	2.0	22	86	8	63	20	11	20	47	1.80
31619167--31619218	23	2.3	23	89	0	77	19	15	23	42	1.89
31620886--31620933	20	2.4	20	82	0	60	33	16	31	18	1.94
31625186--31625224	6	6.3	6	82	5	51	61	2	20	15	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31626855--31626930	23	3.3	23	86	0	116	46	21	17	15	1.84
31626847--31626936	46	2.0	46	90	0	144	44	23	16	15	1.86
31635346--31635385	22	1.9	22	90	10	66	50	15	10	25	1.74
31638653--31638801	48	3.1	49	82	5	180	22	30	20	26	1.98
31646222--31646428	48	4.3	48	83	3	245	23	28	20	27	1.99
31650765--31650858	6	15.8	6	73	9	68	69	12	3	14	1.31
31650762--31650857	30	3.2	30	70	16	90	70	12	3	13	1.27
31652392--31652522	43	3.0	43	62	20	101	32	25	20	22	1.98
31652332--31652661	86	3.8	86	88	2	475	29	23	23	24	1.99
31652332--31652661	172	1.9	173	91	1	538	29	23	23	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196