genome.fa.s25.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  189  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56038801--56038828	13	2.2	13	100	0	56	53	14	0	32	1.41
56039248--56039314	34	1.9	35	93	3	118	50	10	4	34	1.57
56039543--56039589	19	2.5	20	79	10	62	63	4	0	31	1.13
56039670--56039716	23	2.0	23	100	0	94	27	17	25	29	1.97
56041876--56041958	22	3.7	23	80	7	98	38	7	0	54	1.28
56041942--56041999	25	2.4	23	80	11	71	32	5	3	58	1.37
56042265--56042310	24	1.9	24	90	0	74	30	8	2	58	1.40
56049340--56049454	60	2.0	57	90	8	180	21	10	15	52	1.73
56050571--56050595	3	8.3	3	100	0	50	0	32	0	68	0.90
56051598--56051656	24	2.5	24	86	5	84	11	35	23	28	1.91
56051782--56051856	21	3.4	21	71	16	62	17	20	21	41	1.90
56051759--56051886	45	2.8	45	78	2	123	16	26	16	40	1.89
56052673--56052747	21	3.4	21	71	16	62	17	20	21	41	1.90
56052650--56052777	45	2.8	45	79	2	132	16	25	17	40	1.90
56053543--56053641	45	2.2	45	83	3	119	16	24	20	39	1.92
56053579--56053641	21	2.9	21	69	19	56	17	22	19	41	1.90
56051694--56055268	893	4.0	892	98	0	6931	26	21	19	32	1.97
56054459--56054533	21	3.4	21	71	16	62	17	20	21	41	1.90
56054436--56054563	45	2.8	45	79	2	132	16	25	17	40	1.90
56060471--56060637	81	2.1	81	98	0	325	47	17	10	23	1.79
56064890--56064962	39	1.9	38	88	5	112	35	1	0	63	1.04
56073210--56073250	16	2.6	16	96	0	73	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56087659--56087700	3	14.0	3	90	9	68	69	0	30	0	0.89
56089495--56089552	27	2.1	27	84	6	73	39	1	0	58	1.08
56097225--56097314	46	2.0	46	100	0	180	30	17	8	43	1.80
56106051--56106093	16	2.7	16	82	7	52	41	0	4	53	1.21
56107034--56107143	38	2.8	37	81	12	139	60	0	2	37	1.11
56107034--56107147	41	2.8	42	85	7	148	60	0	2	36	1.11
56114964--56115023	24	2.5	24	72	8	59	38	1	3	56	1.26
56121094--56121335	108	2.2	108	85	1	324	17	18	19	44	1.87
56121394--56121479	36	2.4	35	84	9	111	13	22	24	39	1.90
56124077--56124102	6	4.3	6	100	0	52	19	34	30	15	1.93
56146804--56146837	14	2.4	14	90	9	52	20	5	0	73	1.04
56153695--56153725	9	3.4	9	90	0	53	25	12	22	38	1.90
56153778--56153814	9	4.1	9	92	0	65	45	13	10	29	1.77
56158063--56158110	19	2.6	18	84	15	71	50	0	0	50	1.00
56164294--56164330	9	4.1	9	92	0	65	45	13	10	29	1.77
56164532--56164572	19	2.1	20	82	13	50	26	31	0	41	1.56
56170212--56170243	2	16.0	2	93	0	55	46	0	0	53	1.00
56192504--56192586	40	2.0	42	88	6	125	59	2	16	21	1.49
56195407--56195483	39	2.0	39	84	5	102	40	16	23	19	1.91
56201406--56201476	33	2.2	33	82	10	83	71	7	9	11	1.30
56218454--56218500	25	1.9	25	82	4	60	17	6	21	55	1.64
56218709--56218864	78	2.0	78	97	0	294	36	21	9	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56220081--56220121	3	13.7	3	92	0	64	2	36	26	34	1.70
56220078--56220123	21	2.2	21	96	0	83	6	34	23	34	1.81
56221008--56221063	20	2.7	21	83	2	69	69	0	7	23	1.12
56221235--56221279	6	7.0	6	82	12	54	20	4	0	75	0.97
56221506--56221551	24	2.0	23	86	4	65	60	8	0	30	1.26
56221696--56221770	17	4.0	17	77	17	78	26	2	1	69	1.10
56224461--56224489	3	9.7	3	100	0	58	34	31	0	34	1.58
56229555--56229594	21	1.9	21	84	0	53	57	7	7	27	1.53
56238524--56238588	31	2.1	31	85	2	87	38	13	12	35	1.83
56241708--56241864	25	6.3	25	67	19	105	17	23	21	37	1.94
56243576--56243616	8	5.0	8	88	5	64	41	0	0	58	0.98
56243687--56243725	17	2.1	19	86	13	55	71	0	28	0	0.86
56243669--56243725	27	2.2	26	81	12	64	68	3	28	0	1.06
56243669--56243725	26	2.1	27	81	9	64	68	3	28	0	1.06
56244646--56244744	41	2.4	40	81	3	99	40	1	25	33	1.62
56256439--56256547	47	2.2	49	80	6	123	22	13	27	35	1.92
56257071--56257184	25	4.6	25	88	0	165	21	21	17	39	1.92
56257071--56257184	50	2.3	50	92	0	183	21	21	17	39	1.92
56257084--56257202	25	5.0	22	84	3	76	20	22	18	38	1.93
56258515--56258539	13	1.9	13	100	0	50	60	16	0	24	1.36
56259365--56259425	30	2.0	30	93	0	104	42	11	14	31	1.81
56259935--56260181	122	2.0	122	100	0	494	47	12	8	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56261848--56261899	25	2.1	24	89	3	77	28	28	15	26	1.96
56286698--56286743	23	2.0	23	91	0	74	32	41	2	23	1.67
56286859--56287194	170	2.0	170	94	0	591	29	20	10	39	1.86
56288605--56288639	18	1.9	18	100	0	70	8	0	51	40	1.33
56288606--56288653	23	2.1	23	88	0	69	10	2	45	41	1.50
56290361--56290399	16	2.5	15	84	8	51	74	7	5	12	1.20
56290569--56290624	20	2.8	20	73	10	51	62	1	33	1	1.16
56290628--56290652	5	5.0	5	100	0	50	40	0	60	0	0.97
56291743--56291796	27	2.0	27	85	7	74	33	5	27	33	1.80
56293594--56293641	19	2.6	19	78	18	57	60	0	2	37	1.09
56293865--56293924	30	2.0	31	86	3	86	40	0	40	20	1.52
56295662--56295761	48	2.1	48	94	0	173	48	11	10	31	1.71
56295704--56295823	62	1.9	62	85	6	163	51	9	5	33	1.58
56298903--56298960	31	1.9	31	92	3	100	15	6	13	63	1.49
56300269--56300312	23	2.0	22	86	4	61	29	0	4	65	1.12
56302415--56302469	24	2.3	24	87	0	74	16	29	25	29	1.97
56302425--56302478	24	2.2	24	83	0	63	18	25	27	27	1.98
56302852--56302888	15	2.4	17	82	17	53	56	0	10	32	1.34
56307591--56307629	20	2.0	20	84	0	51	76	2	5	15	1.06
56329830--56329968	72	2.0	70	82	5	172	39	4	14	41	1.65
56330398--56330506	41	2.6	41	89	4	166	28	19	29	22	1.98
56331266--56331303	18	2.1	18	95	0	67	23	21	0	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56333536--56333572	19	1.9	19	88	0	56	24	40	21	13	1.89
56333702--56333734	10	3.0	11	86	13	50	18	36	0	45	1.49
56333746--56333832	29	3.2	29	64	21	80	31	25	0	43	1.55
56333717--56333839	51	2.4	51	94	1	212	28	26	0	45	1.54
56334980--56335004	7	3.6	7	100	0	50	28	0	12	60	1.32
56337030--56337300	36	6.6	44	78	17	234	36	12	21	29	1.91
56337030--56337221	82	2.3	82	94	0	330	36	13	21	28	1.91
56337066--56337300	119	2.0	115	90	3	362	36	13	20	29	1.91
56338685--56338746	23	2.7	23	89	0	97	46	19	0	33	1.50
56341795--56342136	123	2.8	122	86	5	483	33	22	14	28	1.94
56349055--56349079	3	8.3	3	100	0	50	32	36	0	32	1.58
56351634--56351892	91	2.8	91	98	0	491	47	3	2	47	1.32
56352042--56352083	15	2.7	16	82	14	52	45	0	2	52	1.13
56352033--56352074	15	2.9	15	82	10	52	47	0	0	52	1.00
56352228--56352318	45	2.0	44	87	2	128	34	28	5	31	1.80
56352297--56352334	16	2.4	16	90	0	58	34	34	0	31	1.58
56354242--56354288	21	2.4	19	82	7	58	36	10	0	53	1.36
56355708--56355757	19	2.7	20	81	12	61	38	0	0	62	0.96
56358341--56358396	29	1.9	29	82	7	69	50	3	1	44	1.29
56362430--56362456	13	2.1	13	100	0	54	37	0	0	62	0.95
56362531--56362573	21	2.0	21	100	0	86	46	4	9	39	1.57
56365726--56365754	14	2.1	14	100	0	58	13	44	6	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56366950--56366984	15	2.2	16	90	5	54	48	11	2	37	1.54
56368036--56368135	48	2.1	48	100	0	200	47	6	8	39	1.58
56372723--56372792	31	2.3	29	78	9	77	50	5	1	42	1.35
56394148--56394213	31	2.2	30	83	2	78	42	13	12	31	1.81
56395856--56395924	29	2.4	30	79	13	81	53	2	13	30	1.54
56397036--56397096	29	2.1	29	84	6	79	44	6	1	47	1.39
56400894--56400951	29	1.9	31	89	6	93	65	5	5	24	1.34
56401340--56401573	113	2.1	112	81	8	271	22	22	24	31	1.98
56401913--56401961	18	2.5	21	80	9	59	61	10	2	26	1.39
56402227--56402257	15	2.0	16	93	6	55	16	0	45	38	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196