genome.fa.s25.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  55  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15390102--15390340	50	4.7	51	79	6	202	26	20	28	24	1.99
15414080--15414213	40	3.3	40	89	1	187	31	16	30	21	1.95
15414097--15414213	40	2.9	40	93	0	189	34	16	29	20	1.94
15414161--15414752	112	5.3	112	93	1	934	25	18	29	26	1.98
15414161--15414752	225	2.6	224	91	1	943	25	18	29	26	1.98
15415365--15415390	12	2.2	12	100	0	52	38	7	34	19	1.80
15415776--15415976	84	2.4	83	91	4	330	32	19	17	29	1.95
15416958--15416997	11	3.7	11	90	3	64	35	10	27	27	1.89
15418339--15418439	17	5.6	17	80	17	114	46	12	0	39	1.49
15418330--15418446	57	2.1	57	98	0	225	44	11	1	42	1.50
15418577--15418647	21	3.4	21	80	0	79	33	18	45	2	1.64
15418969--15419301	42	7.9	42	86	1	191	28	21	20	30	1.98
15418969--15419132	44	3.9	41	81	4	157	32	20	20	26	1.97
15419059--15419345	42	6.8	42	91	2	443	23	22	21	32	1.98
15424757--15424830	19	3.5	22	77	13	66	33	9	17	39	1.82
15424772--15424830	23	2.6	23	79	10	59	33	8	18	38	1.81
15427744--15427938	66	2.9	66	83	5	241	32	13	20	32	1.92
15427902--15427959	22	2.6	22	83	0	71	29	12	22	36	1.90
15432392--15432464	37	2.0	37	97	0	137	19	9	12	58	1.60
15432402--15432465	18	3.5	18	68	4	56	21	9	9	59	1.57
15432453--15432481	15	1.9	15	100	0	58	34	3	6	55	1.44
15438247--15438292	13	2.9	17	72	24	55	15	39	26	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15438517--15438591	21	3.4	21	73	18	71	57	0	1	41	1.07
15441431--15441484	23	2.5	20	78	21	56	35	20	0	44	1.52
15441521--15441612	45	2.0	45	89	0	139	33	21	17	27	1.96
15441614--15441754	51	2.8	51	82	4	176	32	28	15	23	1.95
15443875--15443944	27	2.6	27	78	10	81	37	15	7	40	1.75
15452226--15452311	28	3.1	27	83	5	109	36	24	23	16	1.94
15452684--15452791	27	4.0	27	79	3	83	28	18	15	37	1.92
15452640--15452955	54	5.9	54	76	9	193	25	19	19	36	1.95
15452646--15452948	81	3.8	81	81	3	310	25	19	18	36	1.94
15452698--15452948	27	9.4	26	82	6	270	24	19	18	37	1.94
15455272--15455446	37	4.8	37	78	8	178	42	28	10	18	1.83
15455272--15455473	74	2.8	73	79	7	196	41	27	10	20	1.85
15457899--15457973	26	2.8	26	76	11	80	32	17	6	44	1.75
15458120--15458154	6	5.8	6	100	0	70	17	31	0	51	1.45
15458733--15458765	16	2.1	16	100	0	66	42	18	27	12	1.85
15465280--15465323	2	22.0	2	100	0	88	0	50	0	50	1.00
15471770--15472113	51	6.8	50	81	5	345	29	25	14	29	1.95
15471771--15472113	102	3.4	102	87	2	451	29	25	14	29	1.95
15471770--15472112	153	2.3	149	81	3	400	29	25	14	30	1.95
15478882--15479217	51	6.7	50	79	4	295	30	26	14	29	1.95
15478876--15479217	102	3.4	102	83	5	390	30	26	14	29	1.95
15479686--15479742	30	1.9	28	86	10	78	28	21	7	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15498583--15498704	29	4.2	29	94	0	217	36	14	25	23	1.93
15500455--15500479	8	3.1	8	100	0	50	24	0	0	76	0.80
15509333--15509449	57	2.0	60	81	6	141	27	7	8	56	1.57
15514240--15514288	21	2.3	20	89	6	71	59	0	4	36	1.17
15514238--15514301	31	2.1	31	82	11	78	59	1	3	35	1.23
15514320--15514371	25	2.1	25	85	7	70	59	0	3	36	1.16
15514456--15514496	19	2.2	18	91	4	64	65	0	7	26	1.18
15514397--15514507	18	6.1	19	74	18	69	60	1	4	33	1.27
15514535--15514596	24	2.8	21	70	13	52	61	1	1	35	1.16
15514578--15514618	18	2.3	17	87	8	55	73	0	2	24	0.96
15514920--15515016	33	2.8	35	72	20	89	49	1	3	46	1.24
15515402--15515480	39	2.0	39	100	0	158	25	7	41	25	1.81
15515699--15515741	16	2.7	16	82	7	52	34	0	0	65	0.93
15515682--15515818	9	16.6	8	65	19	52	27	4	2	65	1.23
15515875--15515899	11	2.3	11	100	0	50	24	0	0	76	0.80
15516602--15516643	3	14.0	3	100	0	84	66	0	0	33	0.92
15518208--15518241	15	2.3	15	89	0	50	50	5	5	38	1.51
15523137--15523198	5	12.8	5	88	5	92	22	1	35	40	1.64
15528503--15528654	9	16.6	9	69	23	70	33	1	3	61	1.20
15528502--15528560	26	2.2	26	85	8	75	30	1	1	66	1.12
15528503--15528580	18	4.6	16	78	13	84	32	1	2	64	1.15
15528699--15528770	29	2.4	29	81	4	81	23	13	15	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15541987--15542028	22	1.9	22	85	0	57	52	2	19	26	1.58
15542848--15542900	19	2.7	21	80	14	67	33	0	7	58	1.26
15543510--15543537	13	2.2	13	100	0	56	60	0	0	39	0.97
15543910--15543952	22	2.0	21	86	4	59	67	6	4	20	1.33
15544111--15544172	30	2.1	30	100	0	124	25	33	17	22	1.96
15547034--15547075	22	1.9	22	85	0	57	52	2	19	26	1.58
15547895--15547947	19	2.7	21	80	14	67	33	0	7	58	1.26
15563851--15563916	30	2.2	29	82	15	80	54	0	1	43	1.09
15563870--15563919	16	3.2	16	69	13	50	52	0	0	48	1.00
15563983--15564008	9	2.9	9	100	0	52	42	0	0	57	0.98
15570714--15570901	68	2.8	68	84	0	232	35	15	25	23	1.95
15572969--15573015	24	1.9	24	86	4	67	36	0	38	25	1.56
15573685--15573889	27	7.6	27	83	2	241	41	21	15	20	1.90
15580906--15580981	6	12.5	6	77	10	66	78	11	7	1	1.01
15580935--15580981	7	7.3	7	88	7	57	78	12	8	0	0.95
15581521--15581560	19	2.0	20	85	4	55	77	2	5	15	1.04
15584951--15584990	21	1.9	21	90	10	64	65	5	7	22	1.38
15585910--15586038	37	3.5	37	83	7	147	19	16	29	34	1.93
15598452--15598486	18	1.9	18	88	0	52	0	17	2	80	0.84
15607507--15607597	38	2.4	38	83	0	110	24	12	28	35	1.91
15614116--15614162	11	3.9	12	83	11	53	72	2	4	21	1.12
15616306--15616346	21	2.0	21	81	18	50	12	12	14	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15623156--15623212	26	2.2	25	79	11	62	17	26	22	33	1.96
15623163--15623227	26	2.5	27	85	5	80	16	24	24	33	1.96
15623242--15623291	24	2.1	24	88	0	73	16	26	22	36	1.94
15625323--15625399	29	2.6	30	77	6	77	55	10	2	31	1.47
15642349--15642434	20	4.3	20	76	10	86	10	30	18	40	1.84
15646247--15646454	25	8.3	25	74	6	134	35	20	18	25	1.96
15646231--15646436	50	4.1	50	76	5	175	35	23	17	22	1.95
15649428--15649479	26	2.0	27	84	3	70	26	1	3	67	1.18
15649448--15649495	16	2.9	17	85	11	64	29	0	2	68	1.01
15649448--15649492	18	2.6	18	89	6	67	31	0	2	66	1.04
15649499--15649554	16	3.2	16	76	14	58	39	0	0	60	0.97
15653866--15653893	2	14.0	2	100	0	56	0	0	50	50	1.00
15657396--15657456	30	2.0	30	96	0	113	6	11	26	55	1.59
15659303--15659595	27	11.0	27	82	6	305	19	16	21	42	1.89
15659291--15659602	80	3.9	81	82	7	343	19	15	22	42	1.89
15659291--15659595	107	2.8	106	83	3	380	19	15	22	42	1.89
15660683--15660730	20	2.4	20	77	19	55	33	4	16	45	1.67
15661706--15661749	23	1.9	24	90	9	74	54	0	20	25	1.45
15662061--15662157	36	2.6	36	76	15	99	41	2	24	31	1.67
15662248--15662349	37	2.6	38	74	9	91	21	21	26	30	1.98
15664281--15664310	6	4.8	6	92	8	51	16	0	0	83	0.65
15664278--15664313	12	2.6	15	79	20	51	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15668633--15668978	180	1.9	180	92	1	577	28	17	21	32	1.96
15680658--15680731	24	3.2	23	64	24	57	25	32	12	29	1.92
15680676--15680747	22	3.2	22	67	18	67	26	31	6	34	1.83
15680659--15680766	45	2.4	45	98	0	207	25	30	11	32	1.91
15682894--15682956	30	2.1	30	94	5	110	30	25	9	34	1.88
15682941--15683133	30	6.5	30	78	3	194	20	28	13	36	1.91
15682941--15683133	60	3.2	60	78	5	221	20	28	13	36	1.91
15682911--15683105	90	2.2	89	83	0	237	22	28	12	36	1.91
15683049--15683115	29	2.3	26	95	5	80	22	26	16	34	1.95
15683119--15683181	29	2.2	29	82	0	72	28	25	14	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196