genome.fa.s25.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  151  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44661616--44661643	9	3.1	9	100	0	56	57	10	0	32	1.33
44661557--44661727	68	2.5	68	97	1	319	47	8	4	39	1.54
44661716--44661768	23	2.3	23	83	3	63	41	5	1	50	1.36
44661723--44661782	29	2.0	30	83	6	77	46	5	1	46	1.34
44669798--44669866	22	3.2	21	76	17	70	39	1	4	55	1.29
44669798--44669840	21	2.0	22	90	9	70	39	0	4	55	1.20
44669798--44669848	20	2.5	21	81	12	61	39	0	5	54	1.24
44673773--44673923	41	3.7	41	96	0	266	27	21	27	23	1.99
44675287--44675378	45	2.0	45	93	0	157	32	8	8	50	1.64
44675892--44676037	59	2.4	62	78	12	135	45	13	15	24	1.83
44679356--44679428	26	2.8	26	82	0	101	42	12	13	31	1.81
44689150--44689187	16	2.6	14	88	12	51	76	0	10	13	1.02
44689150--44689182	15	2.1	16	88	5	50	75	0	12	12	1.04
44707096--44707173	41	1.9	41	89	0	120	32	26	21	19	1.97
44707147--44707190	16	2.8	16	89	0	70	34	27	22	15	1.95
44708524--44708572	20	2.7	18	77	22	57	51	4	2	42	1.32
44718082--44718330	50	4.8	50	85	4	284	20	29	24	26	1.99
44718081--44718330	100	2.4	104	88	6	357	20	29	24	26	1.99
44718425--44718456	13	2.5	13	94	0	55	56	12	0	31	1.37
44718668--44718725	30	1.9	30	89	0	89	31	24	3	41	1.71
44723362--44723444	3	27.7	3	92	0	139	33	31	1	33	1.66
44724698--44724730	16	2.1	16	94	0	57	24	27	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44724759--44724785	1	27.0	1	100	0	54	0	100	0	0	0.00
44726087--44726325	121	2.0	120	95	1	426	44	14	7	33	1.74
44726376--44726470	29	3.6	29	65	24	82	29	2	22	46	1.63
44726386--44726467	22	3.5	22	67	23	67	29	2	23	45	1.66
44726368--44726468	50	2.0	50	100	0	202	31	1	21	44	1.64
44730183--44730307	45	2.8	44	81	4	144	28	27	17	27	1.98
44731083--44731135	24	2.2	24	79	0	61	30	24	13	32	1.93
44731605--44731801	108	1.8	108	87	0	295	45	10	17	26	1.81
44743510--44743546	19	1.9	19	88	0	56	59	5	5	29	1.42
44745221--44745265	24	1.9	23	82	13	56	48	24	6	20	1.73
44751570--44751614	21	2.2	21	80	7	58	46	17	24	11	1.81
44751709--44751948	101	2.4	101	91	0	390	28	24	15	32	1.95
44754925--44755023	45	2.2	44	80	8	110	26	17	13	43	1.85
44761798--44761851	27	1.9	29	85	7	76	74	0	5	20	1.02
44761797--44761845	10	4.6	11	85	9	59	73	0	6	20	1.04
44761805--44761852	17	2.9	17	76	11	55	77	0	4	18	0.93
44761805--44761854	12	4.5	11	85	9	57	76	0	4	20	0.95
44765866--44765915	24	2.1	24	96	0	91	14	36	16	34	1.88
44767285--44767401	61	1.9	61	92	0	198	30	27	19	22	1.98
44768565--44768686	23	5.3	23	88	0	190	31	27	20	21	1.98
44774760--44774880	61	2.0	61	91	0	197	33	25	18	23	1.97
44776044--44776117	23	3.2	23	94	0	121	28	28	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44779137--44779170	6	5.7	6	96	0	50	35	20	0	44	1.52
44785530--44785564	6	5.8	6	100	0	70	34	17	0	48	1.47
44785529--44785575	18	2.6	18	86	0	58	31	21	2	44	1.64
44790292--44790332	6	6.8	6	100	0	82	34	17	0	48	1.47
44790292--44790343	18	2.9	18	91	0	59	32	19	1	46	1.61
44795055--44795095	6	6.8	6	100	0	82	34	17	0	48	1.47
44795055--44795106	18	2.9	18	91	0	59	32	19	1	46	1.61
44799820--44799854	6	5.8	6	100	0	70	34	17	0	48	1.47
44799819--44799865	18	2.6	18	86	0	58	31	21	2	44	1.64
44804615--44804649	6	5.8	6	100	0	70	34	17	0	48	1.47
44804614--44804660	18	2.6	18	86	0	58	31	21	2	44	1.64
44806074--44806103	15	2.0	15	93	0	51	26	20	16	36	1.93
44809450--44809474	6	4.2	6	100	0	50	36	16	0	48	1.46
44814258--44814310	6	8.8	6	100	0	106	33	16	0	49	1.47
44820660--44820763	51	2.0	51	100	0	208	49	11	11	27	1.74
44820853--44820890	6	6.5	6	93	3	51	34	21	0	44	1.52
44825336--44825364	13	2.1	14	93	6	51	55	0	44	0	0.99
44827223--44827290	23	3.1	22	75	16	61	23	0	13	63	1.30
44842271--44842328	28	2.0	30	83	12	77	10	24	0	65	1.23
44846881--44847078	71	2.8	71	80	1	236	27	18	23	31	1.97
44849633--44849677	23	2.0	23	90	0	72	35	24	20	20	1.96
44850852--44850877	11	2.4	11	100	0	52	7	7	19	65	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44851591--44851761	42	4.1	42	84	7	206	28	16	24	29	1.97
44851605--44851783	84	2.1	84	81	8	204	29	17	23	29	1.97
44851605--44851799	42	4.7	41	79	8	155	29	16	24	29	1.97
44852860--44852910	17	3.0	17	97	0	93	35	13	11	39	1.82
44853612--44853696	21	3.9	23	80	11	108	36	24	22	16	1.94
44853612--44853696	44	2.0	41	86	6	116	36	24	22	16	1.94
44854777--44854860	2	47.5	2	67	30	50	52	3	0	44	1.18
44854778--44854818	5	8.0	5	97	2	73	58	0	0	41	0.98
44854778--44854859	15	4.7	16	74	22	76	53	3	0	42	1.18
44864950--44864994	23	2.0	23	81	0	54	28	51	8	11	1.68
44873318--44873377	30	2.0	30	90	0	93	38	1	18	41	1.60
44873693--44873801	38	2.9	38	84	6	141	40	1	18	39	1.61
44873896--44873954	28	2.1	28	93	0	100	28	20	18	32	1.96
44876249--44876381	31	4.3	31	66	11	83	28	12	17	42	1.85
44876170--44876421	93	2.7	92	86	2	337	29	13	15	41	1.85
44880001--44880156	45	3.3	45	67	18	118	28	23	18	29	1.98
44880217--44880879	132	5.0	132	94	0	1119	30	25	15	27	1.96
44880207--44880882	44	15.4	44	77	3	384	31	25	16	26	1.96
44899159--44899594	114	3.8	114	80	4	369	33	21	19	25	1.96
44904175--44904227	12	4.2	12	81	9	52	24	18	9	47	1.78
44904174--44904215	14	3.2	14	83	9	54	21	16	9	52	1.72
44908244--44908305	25	2.5	24	79	5	70	27	1	20	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44910598--44910636	20	2.0	20	84	0	51	58	2	0	38	1.12
44916250--44916306	3	19.3	3	78	10	64	33	5	0	61	1.18
44916249--44916304	22	2.5	23	88	5	89	35	5	0	58	1.21
44916249--44916317	22	3.0	22	78	18	61	33	5	0	60	1.20
44916250--44916324	25	3.1	24	75	14	75	33	5	0	61	1.19
44916320--44916372	22	2.4	22	84	6	63	39	11	1	47	1.50
44916329--44916374	22	2.0	23	87	4	67	41	10	2	45	1.51
44916501--44916554	25	2.2	25	80	12	58	42	5	1	50	1.36
44922137--44922171	18	1.9	18	88	0	52	8	11	2	77	1.10
44922855--44922902	13	3.8	12	78	10	51	35	4	20	39	1.72
44923080--44923135	24	2.3	24	78	9	60	46	0	1	51	1.11
44932975--44933037	22	3.0	21	81	13	67	38	3	0	58	1.14
44935358--44935399	3	14.0	3	100	0	84	66	0	0	33	0.92
44937120--44937183	31	2.0	32	90	3	103	31	9	18	40	1.83
44945824--44945849	13	2.0	13	100	0	52	7	0	30	61	1.24
44947781--44947828	25	1.9	25	100	0	96	39	14	0	45	1.45
44947742--44947873	71	1.9	70	93	1	228	51	12	0	36	1.39
44948302--44948341	18	2.2	18	90	0	62	40	5	30	25	1.77
44949187--44949224	20	1.9	20	84	10	51	55	7	2	34	1.43
44949999--44950057	21	2.8	20	80	14	57	55	3	0	40	1.16
44950040--44950065	11	2.4	11	100	0	52	61	0	0	38	0.96
44950090--44950133	16	2.8	16	78	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44950647--44950744	51	1.9	51	89	4	153	46	3	22	27	1.66
44950706--44950782	33	2.3	34	82	8	95	45	1	28	24	1.61
44950720--44950781	11	5.6	11	88	3	81	43	1	32	22	1.63
44952476--44952608	41	3.1	41	85	5	176	27	5	21	46	1.72
44952474--44952621	64	2.2	67	91	5	239	26	5	22	45	1.73
44952474--44952624	23	6.8	23	85	7	213	25	5	21	47	1.72
44952623--44952983	25	14.9	25	72	17	271	44	15	0	40	1.46
44952623--44952983	121	3.0	121	96	0	659	44	15	0	40	1.46
44954097--44954128	7	4.6	7	96	0	55	62	12	0	25	1.30
44954091--44954128	14	2.7	14	87	0	58	60	13	0	26	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196