genome.fa.s25.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  81  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23298558--23302701	298	13.9	296	73	8	1433	19	31	29	19	1.97
23299671--23300314	212	3.0	208	76	6	506	21	30	28	20	1.98
23302280--23302771	170	2.9	169	84	2	531	18	32	30	18	1.95
23302268--23302771	255	2.0	255	82	2	627	18	32	30	18	1.95
23304487--23304519	15	2.2	15	100	0	66	30	27	12	30	1.92
23308649--23308970	85	3.8	83	77	7	279	21	32	27	19	1.97
23308649--23308983	43	7.9	42	79	6	300	21	32	27	18	1.97
23308649--23308970	128	2.5	128	82	5	375	21	32	27	19	1.97
23309453--23309587	43	3.1	43	88	0	180	18	34	31	14	1.91
23317892--23318825	43	22.0	43	73	7	532	19	31	29	19	1.96
23318001--23318825	85	9.7	85	77	3	653	19	31	29	19	1.96
23317915--23318660	128	5.8	128	74	8	579	19	30	30	19	1.96
23318040--23318532	127	3.9	126	73	13	325	19	31	29	19	1.97
23318585--23318844	128	2.0	127	83	2	324	18	34	28	18	1.95
23318850--23318927	24	3.2	24	79	0	84	23	30	33	12	1.92
23324479--23324631	43	3.6	42	82	7	184	24	35	25	14	1.93
23331547--23332288	43	17.5	43	69	9	295	21	30	27	20	1.98
23331717--23331817	42	2.4	43	81	5	116	16	27	34	20	1.95
23331592--23332161	85	6.7	85	74	3	387	21	30	27	19	1.98
23332012--23332288	128	2.2	127	81	3	313	18	31	28	22	1.97
23334461--23334628	43	3.9	43	84	1	203	16	24	36	23	1.94
23334461--23334628	85	2.0	86	82	3	205	16	24	36	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23335087--23335193	42	2.5	42	90	3	169	14	23	37	25	1.92
23339492--23339631	75	1.9	75	92	0	235	32	22	19	25	1.97
23339633--23339741	43	2.5	43	92	0	182	14	32	33	20	1.93
23340097--23340308	85	2.5	85	83	3	248	19	29	31	19	1.96
23340117--23340257	42	3.3	42	67	13	108	17	29	34	19	1.95
23340273--23340356	43	2.0	43	85	0	114	21	32	28	17	1.96
23340504--23341310	43	19.0	42	66	16	227	21	28	29	19	1.98
23340465--23340648	85	2.2	84	80	2	188	20	30	30	17	1.96
23340110--23341204	213	5.1	208	72	8	692	21	29	30	19	1.97
23340761--23340949	85	2.2	85	81	5	213	21	30	30	17	1.96
23340917--23341323	85	4.8	84	72	12	294	21	28	30	19	1.98
23340185--23341459	128	10.0	128	73	7	687	21	29	29	19	1.98
23341525--23341672	43	3.5	42	78	7	129	20	27	33	18	1.96
23344099--23344155	29	2.0	29	92	0	96	26	14	26	33	1.94
23350393--23350464	36	2.0	35	89	2	108	31	11	29	27	1.91
23355521--23355592	36	2.0	35	89	2	108	31	9	27	30	1.89
23363535--23363621	44	2.0	43	80	13	97	24	27	29	18	1.98
23363884--23364046	75	2.2	75	87	5	240	29	28	16	25	1.97
23364043--23364166	43	2.9	43	86	1	167	17	33	29	19	1.95
23364044--23364204	86	1.9	86	81	0	196	21	31	27	19	1.98
23366159--23366202	22	2.0	23	81	4	54	40	15	18	25	1.90
23368882--23368941	24	2.5	24	77	0	66	8	31	36	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23368962--23370577	43	37.8	43	67	11	423	19	28	31	19	1.97
23368962--23369254	85	3.4	85	84	0	352	19	29	32	18	1.96
23369100--23369379	128	2.2	128	83	1	337	18	28	32	20	1.96
23369230--23369719	85	5.8	85	77	2	326	19	28	32	20	1.97
23369016--23369465	213	2.1	213	82	1	544	18	28	32	19	1.96
23369161--23369450	128	2.3	127	79	7	284	17	28	33	21	1.96
23368962--23369540	298	1.9	298	81	4	686	18	28	32	20	1.96
23369533--23369972	213	2.1	212	82	3	535	20	28	32	18	1.96
23369714--23370194	85	5.6	86	74	12	294	20	28	30	19	1.97
23369714--23370079	170	2.2	170	78	7	388	19	28	31	19	1.97
23369996--23370172	93	1.9	93	85	2	248	22	28	28	20	1.99
23369788--23370448	128	5.1	128	73	9	407	20	29	30	19	1.97
23370094--23370489	126	3.1	126	78	5	280	20	29	30	19	1.97
23370561--23370687	43	3.0	43	77	9	141	17	29	33	19	1.95
23370094--23370663	128	4.5	126	75	7	361	20	29	30	19	1.97
23374016--23374224	70	3.0	69	80	6	242	36	17	16	30	1.92
23374796--23374836	21	2.0	21	85	0	55	51	2	9	36	1.48
23374864--23374941	31	2.5	31	79	8	79	58	3	3	33	1.34
23379881--23379954	24	3.1	24	100	0	148	41	12	8	37	1.72
23380049--23380095	23	2.0	23	95	0	85	44	4	29	21	1.71
23381142--23381184	20	2.2	20	100	0	86	34	18	4	41	1.71
23382193--23382280	45	2.0	45	90	4	142	36	23	14	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23382294--23382476	50	3.6	50	75	11	185	30	28	16	24	1.97
23382964--23383116	76	2.0	76	100	0	306	42	13	13	31	1.82
23385225--23385252	13	2.2	13	100	0	56	50	0	7	42	1.30
23389931--23390043	39	2.9	39	90	1	174	51	10	7	30	1.63
23390146--23390217	36	2.0	36	83	0	90	23	27	20	27	1.99
23395853--23395966	39	2.9	39	96	1	203	49	13	7	29	1.70
23395961--23395986	9	2.9	9	100	0	52	69	11	0	19	1.18
23396720--23397148	231	1.9	232	98	0	833	28	35	13	22	1.92
23398421--23398456	17	2.0	19	89	10	58	27	11	11	50	1.72
23399965--23400003	16	2.2	17	86	13	53	69	0	5	25	1.09
23399964--23400008	18	2.4	18	82	10	56	71	0	4	24	1.05
23404961--23405004	21	2.1	21	83	8	54	38	4	0	56	1.20
23407634--23407677	21	2.1	21	83	8	54	38	0	2	59	1.10
23418297--23418686	49	8.1	49	91	3	589	31	8	31	28	1.87
23422647--23422691	21	2.1	22	84	12	58	66	8	11	13	1.44
23425500--23425696	35	5.8	35	83	5	235	40	16	23	19	1.91
23425500--23425695	67	2.9	68	87	4	256	39	16	23	19	1.91
23425490--23425696	102	2.0	102	92	0	342	41	16	22	19	1.90
23429528--23429571	21	2.1	21	87	8	63	36	0	2	61	1.09
23432021--23432203	101	1.8	102	88	5	282	24	17	27	30	1.97
23432011--23432201	51	3.8	50	74	12	185	25	16	27	30	1.97
23432021--23432211	102	1.9	101	86	5	278	24	17	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23432207--23432304	46	2.2	43	80	12	108	23	19	24	32	1.97
23432429--23432460	16	2.0	16	93	0	55	59	0	15	25	1.36
23432577--23432614	19	2.0	19	100	0	76	57	5	10	26	1.53
23433122--23433165	21	2.1	21	95	0	79	40	9	11	38	1.73
23433708--23433759	25	2.1	25	85	7	70	32	3	5	57	1.40
23434319--23434358	19	2.0	20	85	4	55	32	5	10	52	1.56
23434599--23434792	98	2.0	98	93	0	334	29	9	23	36	1.87
23437910--23437963	25	2.2	24	81	12	65	20	14	9	55	1.66
23439119--23439163	8	5.8	8	78	5	56	71	2	15	11	1.24
23439119--23439162	15	2.9	15	86	10	54	70	2	15	11	1.26
23440408--23440674	132	2.0	132	88	1	401	29	20	25	24	1.99
23440655--23440756	44	2.3	44	84	5	125	29	15	24	30	1.96
23440672--23440756	44	1.9	44	88	4	127	28	14	24	32	1.94
23440960--23441035	21	3.7	21	89	7	120	42	10	11	35	1.76
23441027--23441071	21	2.0	23	83	8	58	37	4	13	44	1.64
23442192--23442231	19	2.0	20	85	4	55	32	5	10	52	1.56
23442468--23442662	98	2.0	98	92	2	329	29	10	23	37	1.87
23445778--23445831	25	2.2	24	78	12	56	22	12	9	55	1.65
23446988--23447032	8	5.8	8	78	5	56	71	2	15	11	1.24
23446988--23447031	15	2.9	15	86	10	54	70	2	15	11	1.26
23448278--23448544	132	2.0	132	88	1	401	29	20	25	24	1.99
23448525--23448626	44	2.3	44	84	5	125	29	15	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23448542--23448626	44	1.9	44	88	4	127	28	14	24	32	1.94
23448830--23448905	21	3.7	21	89	7	120	42	10	11	35	1.76
23448897--23448941	21	2.0	23	83	8	58	37	4	13	44	1.64
23449207--23449258	25	2.2	25	82	6	63	21	5	3	69	1.26
23450070--23450109	19	2.0	20	85	4	55	32	5	10	52	1.56
23450346--23450540	98	2.0	98	93	2	338	28	10	24	36	1.88
23460080--23460188	41	2.7	41	89	1	175	29	19	28	22	1.98
23460162--23460214	26	2.0	26	92	0	88	18	22	35	22	1.95
23460188--23460424	42	5.6	42	71	11	164	21	17	25	35	1.95
23460232--23460424	84	2.3	84	95	0	341	20	17	25	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196