genome.fa.s25.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  164  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48070998--48071581	46	12.5	46	84	9	745	28	21	16	33	1.95
48071221--48071348	62	2.0	64	92	5	217	28	25	12	34	1.92
48071175--48071394	108	2.0	110	92	3	374	28	23	14	34	1.94
48071085--48071581	200	2.6	198	92	5	824	28	21	15	33	1.95
48070998--48071581	138	4.2	138	87	8	847	28	21	16	33	1.95
48074830--48074952	49	2.6	47	83	7	133	29	25	14	30	1.95
48076243--48076674	46	9.5	46	95	0	753	28	22	15	33	1.95
48083114--48083183	35	2.0	35	100	0	140	20	25	17	37	1.94
48087779--48087856	26	3.0	27	77	9	90	21	21	19	37	1.95
48091092--48091145	24	2.2	24	93	0	90	37	18	25	18	1.94
48091160--48091215	23	2.4	23	84	0	76	42	17	26	12	1.85
48091905--48091958	28	1.9	28	81	7	65	33	16	7	42	1.76
48094735--48094760	7	3.7	7	100	0	52	30	42	11	15	1.82
48095359--48095421	28	2.2	29	81	18	80	46	1	0	52	1.10
48110357--48110394	20	1.9	20	88	0	58	42	2	2	52	1.29
48110430--48110454	7	3.6	7	100	0	50	24	0	12	64	1.27
48110675--48110766	17	5.4	18	69	23	58	52	4	2	41	1.33
48112574--48112624	25	2.0	25	100	0	102	15	11	19	52	1.73
48112649--48112699	18	2.8	18	81	3	57	68	0	0	31	0.90
48115530--48115566	3	12.7	3	94	5	67	29	0	0	70	0.88
48117122--48117188	21	3.2	20	72	6	53	46	17	20	14	1.84
48117108--48117188	41	2.0	41	82	2	99	45	18	20	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48122939--48122994	29	1.9	29	88	0	85	42	3	21	32	1.70
48123206--48123237	13	2.5	13	94	0	55	31	0	12	56	1.37
48123332--48123521	50	3.7	49	87	7	229	27	23	28	20	1.99
48123445--48123521	25	3.0	26	60	17	61	28	24	27	19	1.99
48130420--48130477	30	1.9	30	89	0	89	41	3	24	31	1.71
48130689--48130720	13	2.5	13	94	0	55	31	0	12	56	1.37
48130815--48131055	50	4.7	50	86	5	297	26	24	29	19	1.99
48130815--48131063	100	2.4	103	87	7	355	26	23	29	20	1.99
48134396--48134580	46	4.0	46	93	0	307	29	27	8	35	1.85
48135812--48135853	17	2.6	16	88	7	66	52	21	0	26	1.47
48136769--48136871	21	4.9	20	74	7	73	45	18	19	16	1.85
48136814--48136888	21	3.6	21	78	7	82	48	18	18	14	1.82
48136769--48136897	41	3.1	44	83	10	164	44	18	19	17	1.86
48139551--48139763	106	2.0	106	94	0	372	30	18	13	37	1.89
48147355--48147406	27	1.9	27	92	0	86	48	7	3	40	1.50
48150146--48150226	26	3.1	26	87	0	108	20	20	23	34	1.97
48155945--48155979	11	3.0	12	91	4	54	0	0	34	65	0.93
48157897--48158840	469	2.0	469	98	0	1825	27	16	27	28	1.97
48161108--48161188	26	3.1	26	85	0	108	19	22	23	34	1.96
48163120--48163167	22	2.1	23	81	11	55	62	2	2	33	1.18
48163351--48163406	24	2.3	23	80	19	62	53	3	3	39	1.36
48165230--48165277	19	2.3	21	86	10	64	39	4	2	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48167183--48167241	17	3.4	17	69	17	57	35	3	5	55	1.38
48167951--48168105	41	3.8	41	86	4	179	18	25	21	33	1.97
48167988--48168142	41	3.8	40	82	3	175	20	23	25	30	1.98
48169640--48169902	116	2.3	117	81	4	309	28	17	19	34	1.95
48172616--48172742	43	2.8	43	69	16	96	42	4	4	48	1.45
48172573--48173132	213	2.6	213	99	0	1102	40	10	8	41	1.69
48172829--48172955	42	2.8	43	69	20	98	41	4	5	48	1.47
48173129--48173521	9	45.9	9	74	12	276	46	21	2	29	1.64
48173130--48173532	25	15.7	25	77	6	123	46	21	2	29	1.65
48173229--48173301	37	2.0	37	94	0	128	47	19	2	30	1.63
48173129--48173521	34	11.2	35	75	12	249	46	21	2	29	1.64
48173314--48173518	25	8.0	27	85	1	178	44	22	2	29	1.66
48178993--48179061	21	3.3	21	79	0	75	36	17	42	4	1.69
48179509--48179779	85	3.2	83	82	7	305	25	23	20	29	1.99
48179509--48179779	42	6.4	42	85	6	307	25	23	20	29	1.99
48184359--48184410	23	2.3	23	100	0	104	36	17	23	23	1.95
48191291--48191376	24	3.6	24	75	4	66	33	19	26	19	1.96
48191292--48191476	72	2.5	72	75	11	162	33	20	24	21	1.97
48191435--48191485	26	2.0	26	88	0	75	37	23	21	17	1.94
48200190--48200238	23	2.2	21	82	7	53	22	0	6	71	1.08
48225270--48225351	30	2.7	30	88	0	128	23	23	7	46	1.77
48229937--48230018	30	2.7	30	84	0	119	26	19	6	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48229937--48230012	15	5.1	15	67	10	57	27	18	6	47	1.73
48232332--48232358	6	4.5	6	100	0	54	0	14	70	14	1.17
48237410--48237434	2	12.5	2	100	0	50	0	0	48	52	1.00
48238178--48238312	40	3.4	39	75	7	130	25	18	25	31	1.98
48239658--48239714	30	1.9	29	85	3	78	22	24	36	15	1.94
48242389--48242502	42	2.7	42	85	6	144	17	18	18	45	1.86
48242435--48242495	21	3.0	20	66	7	50	19	21	14	44	1.86
48242399--48242516	42	2.8	42	83	3	132	17	19	17	44	1.86
48247312--48247343	16	2.0	16	100	0	64	43	18	6	31	1.75
48249984--48250017	17	2.0	17	88	0	50	52	0	0	47	1.00
48249976--48250255	117	2.4	119	92	5	464	48	4	2	44	1.37
48250011--48250195	61	3.1	59	70	22	172	48	6	2	42	1.43
48250218--48250254	16	2.2	17	86	13	51	54	0	2	43	1.14
48249970--48250269	61	5.2	52	67	24	169	49	4	2	44	1.35
48250194--48250476	90	3.0	96	84	10	274	48	3	2	45	1.33
48250311--48250442	18	7.3	18	67	17	60	49	3	2	45	1.30
48250262--48250476	90	2.4	91	92	2	353	47	3	2	46	1.35
48250311--48250461	47	3.3	46	71	21	154	49	3	1	45	1.29
48254348--48254422	23	3.3	23	80	14	93	53	21	8	17	1.69
48254521--48254565	18	2.5	18	92	0	81	57	20	8	13	1.62
48255846--48255888	24	1.9	22	86	13	61	46	13	20	18	1.83
48257070--48257108	14	2.7	15	84	11	55	48	10	10	30	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48258901--48258943	18	2.3	19	88	4	61	53	4	0	41	1.21
48263283--48263313	3	10.3	3	100	0	62	32	0	0	67	0.91
48271380--48271418	2	19.5	2	100	0	78	48	0	51	0	1.00
48290647--48290677	5	6.2	5	92	0	53	22	0	58	19	1.40
48291045--48291107	30	2.1	30	90	0	99	57	12	4	25	1.55
48296224--48296269	19	2.4	20	83	16	62	15	6	0	78	0.95
48297824--48297857	17	2.0	17	94	0	59	11	8	41	38	1.73
48300720--48300763	20	2.3	19	80	7	52	47	0	13	38	1.43
48301400--48301455	26	2.2	26	83	3	69	17	26	17	37	1.93
48303929--48303979	24	2.1	24	85	7	68	31	21	31	15	1.95
48304000--48304066	26	2.7	23	82	11	71	37	23	25	13	1.92
48304521--48304566	21	2.2	21	88	7	67	43	15	0	41	1.46
48307267--48307423	43	3.7	42	77	8	147	31	28	15	24	1.95
48310655--48310696	15	2.6	16	81	14	50	47	0	0	52	1.00
48310662--48310696	15	2.2	17	90	10	56	48	0	0	51	1.00
48316154--48316191	13	3.0	13	80	3	51	71	2	26	0	1.00
48319406--48319470	29	2.2	30	81	8	71	30	1	4	63	1.24
48321988--48322128	51	2.8	50	85	3	185	22	17	28	31	1.97
48322208--48322261	23	2.5	22	78	21	60	42	0	20	37	1.52
48322693--48322728	16	2.2	16	90	0	54	41	2	0	55	1.14
48322732--48322768	16	2.2	18	85	9	51	72	5	5	16	1.21
48322807--48322843	16	2.3	17	86	9	51	75	5	18	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48330380--48330490	46	2.4	46	95	1	197	29	21	17	31	1.96
48330367--48330711	37	8.6	45	88	8	198	27	20	14	37	1.92
48330452--48330673	37	6.0	37	96	0	399	27	19	13	39	1.89
48334372--48334465	33	2.8	33	77	12	84	34	12	24	28	1.92
48348396--48348444	25	2.0	25	84	11	66	36	10	2	51	1.48
48354158--48354384	36	6.0	36	83	9	265	37	11	19	30	1.88
48354122--48354427	82	3.9	82	82	9	413	36	12	20	30	1.90
48358219--48358252	15	2.2	16	94	5	61	47	11	0	41	1.40
48371784--48371904	23	5.2	23	71	11	86	27	11	16	44	1.82
48371761--48371959	70	2.7	70	86	6	263	28	11	17	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196