genome.fa.s25.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  191  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56735318--56736088	313	2.5	314	95	1	1356	51	5	6	37	1.50
56735997--56736088	13	7.0	13	86	7	123	57	6	2	33	1.36
56737222--56737258	9	4.1	9	85	0	56	27	10	16	45	1.80
56739517--56739569	26	2.0	26	81	0	61	58	0	5	35	1.22
56739558--56739655	51	1.9	51	87	4	144	47	2	24	25	1.62
56739619--56739683	11	6.1	10	80	19	62	46	3	29	21	1.67
56739619--56739693	22	3.4	22	80	14	66	46	2	29	21	1.65
56739619--56739693	33	2.2	33	82	13	91	46	2	29	21	1.65
56746251--56746384	72	1.9	72	91	0	223	34	17	10	37	1.85
56747712--56747736	13	1.9	13	100	0	50	20	0	0	80	0.72
56755530--56755607	37	2.1	36	81	9	86	67	2	1	28	1.11
56757671--56757708	19	2.0	19	85	10	51	39	2	7	50	1.46
56758634--56758685	24	2.2	24	89	0	77	55	9	1	32	1.43
56760605--56760656	24	2.2	24	89	0	77	55	9	1	32	1.43
56770870--56770908	16	2.4	16	86	0	51	17	5	7	69	1.32
56772413--56772468	4	14.0	4	100	0	112	50	25	0	25	1.50
56772741--56772790	4	12.5	4	100	0	100	24	0	26	50	1.50
56776054--56776083	15	1.9	16	93	6	53	20	10	0	70	1.16
56780322--56780346	13	1.9	13	100	0	50	24	0	0	76	0.80
56780929--56781023	48	2.0	48	95	0	172	23	24	22	30	1.99
56780977--56781097	61	2.0	62	86	4	174	23	20	18	37	1.94
56790590--56790632	3	14.3	3	80	9	52	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56790580--56790625	21	2.1	22	88	4	67	60	0	4	34	1.16
56790852--56790890	19	2.0	21	85	10	55	69	5	10	15	1.34
56791054--56791111	22	2.6	22	84	7	73	43	17	3	36	1.66
56791083--56791135	19	3.0	17	78	10	61	35	18	9	35	1.84
56791067--56791124	19	2.8	20	84	10	64	39	17	6	36	1.76
56799648--56799674	4	6.8	4	100	0	54	48	0	25	25	1.52
56799883--56799919	15	2.4	16	86	8	51	18	16	21	43	1.88
56801561--56801589	11	2.6	11	100	0	58	62	17	10	10	1.54
56804556--56804618	24	2.9	21	73	21	58	30	3	0	66	1.07
56806430--56806568	46	3.0	45	90	2	215	28	27	10	33	1.90
56809960--56810013	4	13.5	4	84	0	63	27	1	24	46	1.63
56809965--56810023	28	2.1	28	83	0	73	28	3	25	42	1.71
56820141--56820201	31	1.9	32	90	3	97	36	6	11	45	1.66
56827738--56827946	92	2.3	91	86	5	278	45	3	3	46	1.39
56827874--56827921	26	1.9	25	84	16	64	45	0	2	52	1.12
56828087--56828128	15	2.9	15	82	10	52	50	0	0	50	1.00
56828071--56828387	157	2.0	157	95	0	571	47	5	3	43	1.42
56828240--56828274	18	2.0	17	88	5	52	45	0	0	54	0.99
56828509--56828542	16	2.1	16	94	0	59	35	35	0	29	1.58
56830999--56831108	22	4.6	25	71	11	81	20	21	17	40	1.91
56831010--56831098	47	2.0	44	86	6	124	20	22	17	39	1.92
56830999--56831108	47	2.3	49	73	21	117	20	21	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56838273--56838304	6	5.3	6	100	0	64	34	50	0	15	1.45
56842294--56842367	21	3.5	22	85	10	100	35	27	22	14	1.94
56842293--56842380	21	4.0	23	82	10	96	34	25	22	18	1.96
56843697--56843742	14	3.3	14	93	0	83	56	2	0	41	1.11
56845884--56846008	51	2.5	51	93	0	214	28	24	12	36	1.91
56856809--56856845	19	1.9	19	89	10	58	32	2	0	64	1.07
56856813--56856847	18	1.9	18	88	0	52	31	2	0	65	1.07
56856794--56856840	24	1.9	25	95	4	87	29	2	0	68	1.02
56860678--56860732	24	2.3	23	79	11	58	69	20	3	7	1.28
56907231--56907288	30	1.9	30	86	6	82	46	1	6	44	1.40
56913278--56913331	28	1.9	28	88	7	83	20	11	18	50	1.77
56920603--56920647	21	2.2	20	88	4	63	11	6	8	73	1.25
56920603--56920647	10	4.4	10	80	5	54	11	6	8	73	1.25
56924972--56924999	12	2.3	12	100	0	56	25	32	28	14	1.94
56926661--56926690	12	2.4	12	94	5	51	0	23	3	73	0.98
56926660--56926734	22	3.3	21	71	12	60	0	18	8	73	1.07
56929613--56929747	39	3.5	36	72	13	92	22	20	27	29	1.98
56929895--56929921	5	5.4	5	100	0	54	37	0	22	40	1.54
56952671--56952764	48	2.0	48	87	8	138	19	13	26	40	1.89
56955249--56955342	48	2.0	48	87	8	138	18	13	27	40	1.88
56962360--56962386	13	2.1	13	100	0	54	55	14	0	29	1.40
56974800--56974858	25	2.4	24	80	5	64	47	3	1	47	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56975644--56975687	23	1.9	23	85	0	61	40	2	2	54	1.25
56985260--56985312	16	3.4	15	78	2	52	52	3	16	26	1.61
57002491--57002524	13	2.5	14	85	9	52	47	2	5	44	1.42
57004412--57004691	46	6.6	45	86	9	299	28	22	14	35	1.93
57004544--57004655	37	3.0	37	93	0	188	26	20	14	38	1.91
57009513--57009849	46	7.6	46	89	7	509	33	15	21	29	1.94
57009549--57009805	82	3.0	82	87	10	397	34	15	21	29	1.94
57009513--57009849	128	2.6	132	90	5	515	33	15	21	29	1.94
57019664--57019715	26	2.0	26	88	0	77	42	1	11	44	1.51
57029479--57029503	12	2.1	12	100	0	50	52	8	32	8	1.60
57040114--57040154	18	2.2	19	86	4	57	7	63	7	21	1.45
57047755--57047784	15	2.0	15	93	0	51	33	16	0	50	1.46
57058693--57058721	4	7.2	4	100	0	58	48	24	0	27	1.51
57078334--57078508	95	1.8	95	89	4	273	40	14	10	34	1.81
57079419--57079480	31	2.0	31	100	0	124	35	29	3	32	1.73
57082676--57082742	26	2.6	26	100	0	134	20	23	29	25	1.99
57084273--57084335	17	3.5	17	71	12	63	49	14	3	33	1.59
57084267--57084338	37	1.9	37	97	0	135	47	16	2	33	1.61
57084469--57084577	39	2.8	39	97	1	202	17	2	28	51	1.59
57084479--57084560	38	2.3	33	84	14	94	18	2	26	52	1.58
57085147--57085171	3	8.3	3	100	0	50	68	0	32	0	0.90
57085915--57085945	16	1.9	16	100	0	62	3	19	0	77	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57090097--57090121	2	12.5	2	100	0	50	0	52	0	48	1.00
57095493--57095523	9	3.4	9	100	0	62	9	0	0	90	0.46
57099162--57099223	30	2.1	30	93	0	106	14	17	24	43	1.86
57102229--57102277	20	2.6	19	84	15	66	38	2	0	59	1.09
57103333--57103392	30	2.0	31	86	3	86	43	0	36	20	1.52
57103685--57103715	9	3.4	9	90	0	53	38	22	12	25	1.90
57117551--57117587	19	1.9	19	94	0	65	32	16	0	51	1.45
57117565--57117661	51	1.9	51	85	8	135	32	15	5	46	1.68
57125039--57125077	18	2.1	19	95	4	71	38	0	0	61	0.96
57125043--57125083	19	2.2	18	86	4	55	39	0	0	60	0.96
57125042--57125092	20	2.7	19	84	6	59	37	0	1	60	1.08
57133977--57134093	33	3.6	33	95	2	202	41	2	0	55	1.13
57148511--57148535	12	2.1	12	100	0	50	52	0	16	32	1.44
57161044--57161079	15	2.4	15	100	0	72	25	13	19	41	1.88
57162669--57162726	29	2.0	30	89	3	91	41	5	27	25	1.76
57162672--57162735	29	2.2	29	83	5	85	45	4	25	25	1.72
57167119--57167162	21	2.3	18	84	11	52	54	0	2	43	1.12
57167721--57167773	29	2.0	25	85	14	70	33	0	1	64	1.05
57167755--57167840	18	4.9	18	68	13	54	38	2	2	56	1.25
57170338--57170373	18	2.0	18	94	0	63	25	27	8	38	1.84
57170776--57170827	27	1.9	27	88	7	79	34	0	1	63	1.06
57170867--57170922	25	2.3	24	76	11	60	41	0	5	53	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57170945--57170974	9	3.4	9	90	9	53	36	0	0	63	0.95
57171957--57172009	25	2.1	25	96	0	97	22	20	22	33	1.97
57174108--57174173	34	1.9	34	87	0	96	45	16	0	37	1.48
57174126--57174204	34	2.3	34	82	4	88	44	17	1	36	1.57
57175958--57175982	13	1.9	13	100	0	50	52	0	8	40	1.31
57177397--57177577	79	2.3	79	89	1	265	24	11	29	35	1.90
57181760--57181833	29	2.6	29	78	2	87	48	9	10	31	1.70
57189303--57189353	18	2.8	19	77	16	56	64	5	0	29	1.17
57191975--57192018	22	2.0	21	82	4	52	61	9	2	27	1.38
57192346--57192394	25	1.9	25	87	4	71	51	2	4	42	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196