genome.fa.s25.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  142  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42142244--42142314	37	1.9	37	86	11	101	43	1	2	52	1.24
42142374--42142436	24	2.7	22	75	22	65	44	3	1	50	1.27
42148501--42148542	22	1.9	22	85	9	59	35	4	11	47	1.61
42156202--42156256	24	2.2	26	81	12	71	45	0	1	52	1.11
42156394--42156488	45	2.1	44	88	1	136	32	27	5	34	1.79
42156469--42156536	16	4.2	16	92	0	109	35	35	0	29	1.58
42156744--42156781	17	2.4	17	86	8	53	65	0	15	18	1.27
42167119--42167270	27	5.6	27	93	3	241	30	28	13	26	1.94
42167119--42167270	55	2.8	55	94	0	259	30	28	13	26	1.94
42175186--42175337	27	5.6	27	93	3	241	30	28	13	26	1.94
42175186--42175337	55	2.8	55	94	0	259	30	28	13	26	1.94
42177177--42177333	43	3.7	42	79	4	163	33	26	15	24	1.95
42178325--42178351	13	2.1	13	100	0	54	48	22	0	29	1.51
42192794--42192868	30	2.5	30	80	8	82	38	4	1	56	1.27
42193706--42193749	22	2.0	22	95	0	79	9	20	27	43	1.82
42194737--42194774	15	2.4	17	86	8	53	68	2	0	28	1.03
42197823--42197859	4	9.2	4	100	0	74	24	0	0	75	0.80
42197980--42198072	49	1.9	49	93	2	161	44	32	2	21	1.64
42198186--42198223	14	2.7	14	88	8	51	36	39	0	23	1.55
42198938--42198984	15	3.3	15	85	8	62	40	31	2	25	1.68
42199170--42199224	23	2.4	23	87	6	76	36	43	0	20	1.52
42199556--42199791	41	5.8	41	90	2	321	34	25	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42199837--42199976	40	3.5	40	77	10	135	22	19	20	37	1.94
42202616--42202653	16	2.4	17	87	12	55	42	0	5	52	1.24
42204382--42204425	4	11.0	4	100	0	88	50	25	0	25	1.50
42204968--42205001	17	2.0	17	94	0	59	44	50	0	5	1.26
42209608--42209641	17	2.0	17	94	0	59	44	50	0	5	1.26
42209819--42209878	30	2.0	30	90	0	93	8	48	10	33	1.67
42212511--42212562	19	3.1	16	77	20	52	73	1	3	21	1.10
42214493--42214556	29	2.2	30	83	8	78	37	0	40	21	1.54
42214386--42214660	140	1.9	144	83	5	364	38	0	37	23	1.55
42217008--42217055	16	3.1	15	90	6	69	64	2	2	31	1.16
42217004--42217059	24	2.3	24	81	6	69	66	1	1	30	1.12
42217004--42217055	8	6.5	8	82	8	61	65	1	1	30	1.14
42217175--42217231	19	2.8	20	73	7	62	56	5	7	31	1.49
42217210--42217258	25	2.0	25	91	0	80	51	6	8	34	1.57
42217260--42217326	27	2.6	25	80	4	80	58	4	5	31	1.42
42217204--42217419	23	9.0	25	73	13	134	55	4	6	34	1.44
42217905--42218079	30	5.8	30	89	1	237	20	4	48	26	1.67
42220471--42220634	82	2.0	80	94	2	283	43	20	16	18	1.87
42221423--42221457	17	2.0	18	88	5	54	45	14	5	34	1.68
42222091--42222175	35	2.4	35	76	5	82	34	17	4	43	1.70
42226163--42226208	22	2.1	22	88	8	67	58	0	4	36	1.18
42226218--42226269	18	3.0	17	81	13	61	61	0	3	34	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42228936--42229009	14	5.2	14	76	9	69	29	13	1	55	1.47
42228966--42229029	29	2.1	29	85	5	83	29	14	0	56	1.39
42228972--42229008	15	2.5	15	91	4	58	32	10	0	56	1.34
42228972--42229015	22	2.0	22	86	0	61	31	15	0	52	1.44
42235882--42235957	24	3.1	24	83	5	91	15	25	23	35	1.94
42238802--42238841	19	2.1	19	85	0	53	25	17	22	35	1.95
42238831--42238905	36	2.1	36	97	0	141	24	14	10	50	1.74
42240249--42240571	158	2.0	158	92	1	540	38	11	16	33	1.84
42241492--42241639	75	2.0	75	87	2	217	34	6	12	47	1.66
42243897--42243949	4	13.2	4	91	0	70	24	7	24	43	1.80
42244308--42244368	31	2.0	31	83	6	79	42	6	3	47	1.45
42247082--42247107	9	2.9	9	100	0	52	53	0	34	11	1.37
42247431--42247493	6	10.5	6	100	0	126	0	33	17	49	1.47
42247601--42247635	15	2.3	15	90	0	52	14	60	11	14	1.60
42251814--42251881	24	2.9	23	70	18	59	29	4	5	60	1.40
42252553--42252621	35	2.0	35	82	5	86	36	5	4	53	1.45
42253391--42253457	14	5.2	14	70	22	58	34	13	2	49	1.57
42253383--42253460	25	3.1	25	79	20	99	33	12	3	50	1.59
42253392--42253425	11	3.1	11	95	0	59	35	11	0	52	1.38
42253379--42253488	50	2.2	50	87	6	152	30	12	4	52	1.59
42253566--42253625	29	2.1	29	87	6	86	35	11	1	51	1.48
42253566--42253622	28	2.0	28	86	6	80	35	10	1	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42253695--42253733	16	2.4	16	82	0	51	35	10	2	51	1.50
42255401--42255442	20	2.2	19	87	8	59	50	7	7	35	1.57
42259113--42259147	12	2.9	12	82	0	52	54	14	5	25	1.62
42264557--42265023	120	3.9	120	98	0	884	43	2	6	47	1.41
42265171--42265261	45	2.0	45	85	2	121	37	28	6	27	1.82
42265242--42265310	16	4.2	16	92	3	120	36	37	1	24	1.65
42265242--42265310	33	2.1	32	94	2	120	36	37	1	24	1.65
42276748--42276795	5	9.6	5	95	0	87	79	0	0	20	0.74
42299579--42299628	25	2.0	25	100	0	100	28	8	36	28	1.85
42303113--42303155	18	2.5	17	76	3	50	34	0	2	62	1.08
42304039--42304408	183	2.0	183	98	0	722	39	7	15	36	1.77
42305725--42305750	3	8.7	3	100	0	52	69	0	0	30	0.89
42311861--42311950	39	2.2	41	86	3	121	52	5	3	38	1.41
42313307--42313363	21	2.7	20	76	10	60	14	5	3	77	1.08
42313459--42313530	10	7.1	10	78	9	67	36	0	2	61	1.11
42313484--42313544	31	2.0	31	84	12	81	39	0	3	57	1.15
42313479--42313529	21	2.5	20	75	15	59	37	0	1	60	1.08
42321626--42321668	13	3.1	14	83	10	52	53	0	0	46	1.00
42321719--42321781	12	5.2	12	75	22	60	47	0	0	52	1.00
42321703--42321768	21	2.9	22	76	14	71	48	0	0	51	1.00
42321703--42321776	37	2.0	37	86	5	105	48	0	0	51	1.00
42321711--42321780	17	4.2	17	71	20	58	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42321797--42321829	15	2.1	16	94	5	59	63	0	0	36	0.95
42321865--42321921	15	3.5	15	71	17	51	50	3	0	45	1.18
42326487--42326671	98	1.9	98	86	4	266	29	21	15	33	1.94
42326629--42327712	44	24.6	44	68	14	393	29	21	18	31	1.97
42326681--42327305	85	7.2	86	71	11	332	29	21	19	30	1.97
42326763--42327306	129	4.2	129	95	0	964	29	21	18	30	1.97
42327477--42327717	46	5.4	46	72	15	184	29	21	19	29	1.98
42327371--42327841	44	10.8	43	67	14	187	28	21	18	31	1.97
42327364--42327843	175	2.7	174	91	1	773	28	21	18	31	1.97
42327371--42327842	87	5.4	86	72	10	393	28	21	18	31	1.97
42329072--42329118	7	7.0	7	80	9	62	14	17	2	65	1.36
42329072--42329118	13	3.5	13	80	13	60	14	17	2	65	1.36
42329076--42329114	20	2.0	20	94	0	69	15	17	2	64	1.41
42330075--42330105	7	4.4	7	100	0	62	0	25	0	74	0.82
42330103--42330141	15	2.7	15	92	4	62	7	0	7	84	0.77
42330115--42330147	14	2.3	15	89	5	50	12	3	3	81	0.91
42336643--42336676	12	2.9	12	86	4	52	29	8	0	61	1.26
42340638--42340737	35	2.8	36	75	14	98	70	8	9	13	1.35
42340685--42340772	47	2.0	44	82	13	108	72	6	11	9	1.27
42340742--42340776	14	2.5	14	95	0	61	80	0	20	0	0.72
42342745--42343730	128	7.7	128	94	0	1675	30	20	24	24	1.98
42343741--42343980	44	5.5	44	70	8	168	29	17	24	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42354191--42354246	20	2.8	20	80	17	62	12	7	10	69	1.36
42357812--42357866	28	2.0	28	85	7	76	20	10	7	61	1.52
42359902--42359975	37	2.0	37	100	0	148	43	8	10	37	1.69
42370960--42371056	21	4.6	21	78	7	106	47	28	0	23	1.52
42370967--42371056	43	2.1	42	82	10	103	47	27	0	24	1.52
42371026--42371085	29	2.1	29	93	0	102	51	30	0	18	1.46
42371026--42371085	15	4.1	15	78	8	61	51	30	0	18	1.46
42371048--42371472	22	19.8	22	71	9	229	48	28	0	21	1.56
42371325--42371500	7	24.3	7	66	21	69	49	27	0	22	1.54
42371418--42371518	37	2.8	36	73	5	105	47	27	0	23	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196