genome.fa.s25.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  168  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49238340--49238530	35	5.4	34	77	15	156	70	0	29	0	0.92
49238343--49238510	40	4.3	41	82	14	198	68	0	30	0	0.94
49238362--49238510	38	3.7	41	82	14	170	69	0	29	0	0.93
49238343--49238530	40	4.9	40	80	14	195	69	0	29	0	0.92
49241614--49241656	18	2.4	17	85	11	59	13	46	6	32	1.71
49242580--49242618	20	2.0	21	85	10	55	66	10	0	23	1.22
49242759--49242816	27	2.1	27	93	0	98	12	27	31	29	1.92
49242865--49242908	21	2.1	21	100	0	88	56	0	9	34	1.31
49243804--49243882	28	2.9	27	79	5	79	37	2	11	48	1.53
49243804--49243876	27	2.7	28	82	4	78	39	2	10	46	1.53
49254221--49254266	24	2.0	24	86	4	67	45	0	4	50	1.21
49254568--49254634	33	2.0	33	94	0	116	35	13	16	34	1.88
49254443--49254759	158	2.0	158	87	3	451	32	17	20	29	1.96
49254601--49254948	125	2.8	123	84	5	450	30	17	22	30	1.96
49258150--49259354	22	55.4	22	72	12	389	22	0	26	49	1.53
49258153--49258434	107	2.6	109	80	11	298	21	0	26	51	1.51
49258323--49258355	15	2.1	16	88	5	50	18	3	24	54	1.57
49258444--49258502	30	2.0	28	87	6	82	25	0	22	52	1.47
49258456--49258517	30	2.1	30	84	0	79	27	0	17	54	1.43
49258521--49258570	15	3.2	15	81	10	64	16	0	28	56	1.41
49258589--49258656	29	2.3	29	82	0	73	22	0	25	52	1.47
49258605--49258678	7	10.4	7	73	12	53	24	0	24	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49258631--49259058	65	6.7	64	72	12	231	25	0	24	49	1.54
49258780--49259322	87	6.3	86	73	10	308	21	0	27	50	1.54
49259072--49259105	14	2.4	14	90	5	50	26	0	20	52	1.46
49258788--49259549	43	17.9	42	71	10	295	21	0	28	50	1.53
49259146--49259355	21	9.8	21	74	7	127	19	0	29	50	1.54
49259328--49259390	33	1.9	33	96	0	117	26	0	33	39	1.57
49259438--49259500	22	3.0	21	74	4	72	23	0	30	46	1.53
49259506--49259549	7	6.3	7	86	0	61	13	0	34	52	1.41
49259506--49259549	14	3.1	14	90	0	70	13	0	34	52	1.41
49263544--49263595	18	2.9	18	74	8	61	0	15	15	69	1.20
49264212--49264274	31	2.0	32	96	3	119	42	15	9	31	1.79
49265799--49265842	11	3.8	12	82	8	56	45	2	29	22	1.65
49268789--49268821	10	3.3	10	87	12	50	9	18	0	72	1.10
49270691--49270733	13	3.3	13	84	9	52	58	0	4	37	1.19
49275332--49275402	29	2.4	30	81	11	76	36	2	1	59	1.21
49279353--49279377	6	4.2	6	100	0	50	84	0	0	16	0.63
49284875--49284951	38	2.0	38	94	0	136	31	16	3	48	1.65
49290261--49290338	29	2.6	29	83	4	93	47	14	14	24	1.80
49290286--49290359	29	2.5	29	86	4	94	50	16	13	20	1.78
49290898--49290927	15	2.0	15	100	0	60	46	20	13	20	1.83
49291749--49291788	20	2.0	20	85	9	55	42	17	22	17	1.89
49293531--49293563	15	2.1	16	88	5	50	60	21	0	18	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49294522--49294566	22	2.0	22	95	0	81	40	4	6	48	1.49
49295829--49295869	21	2.0	21	85	9	57	70	7	0	21	1.11
49295850--49295897	26	1.9	24	83	8	60	68	8	2	20	1.26
49300700--49300728	12	2.3	13	94	5	51	17	0	0	82	0.66
49301010--49301053	11	4.0	11	84	0	52	9	27	54	9	1.62
49301014--49301063	22	2.3	22	78	0	55	12	24	54	10	1.67
49301653--49301732	28	2.8	29	83	5	83	37	13	2	46	1.57
49301950--49302003	25	2.2	24	87	6	74	22	9	5	62	1.45
49301950--49301997	25	2.0	24	91	4	78	25	8	6	60	1.49
49301957--49302009	25	2.1	25	82	6	63	26	13	5	54	1.60
49302019--49302053	11	3.1	11	91	4	52	25	0	0	74	0.82
49306580--49306613	17	2.0	17	100	0	68	58	0	5	35	1.22
49314198--49314230	14	2.3	15	94	5	59	48	0	0	51	1.00
49314195--49314243	14	3.1	17	77	19	52	51	0	0	48	1.00
49318481--49318573	32	2.9	31	93	6	159	27	3	17	51	1.60
49319959--49319996	14	2.7	15	88	11	55	44	15	2	36	1.61
49330533--49330573	18	2.3	18	82	0	55	21	0	9	68	1.18
49330540--49330568	14	2.0	15	93	6	51	17	0	6	75	1.01
49331817--49331849	16	2.1	16	94	0	57	0	9	3	87	0.63
49334278--49334306	13	2.1	14	93	6	51	31	0	0	68	0.89
49334505--49334535	14	2.2	14	100	0	62	45	0	0	54	0.99
49336769--49336803	15	2.2	16	95	5	63	31	2	0	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49341055--49341118	32	2.0	32	93	0	110	37	9	6	46	1.61
49342654--49342746	32	2.9	32	88	0	141	52	13	3	30	1.57
49343338--49343467	64	2.1	61	80	12	151	30	3	15	50	1.59
49343373--49343465	32	2.9	31	90	6	150	30	3	15	51	1.58
49344847--49344884	14	2.7	15	88	11	55	44	15	2	36	1.61
49349236--49349301	32	2.1	32	100	0	132	31	12	15	40	1.83
49359051--49359079	13	2.1	14	93	6	51	31	0	0	68	0.89
49359278--49359308	14	2.2	14	100	0	62	45	0	0	54	0.99
49359787--49359811	3	8.3	3	100	0	50	0	32	0	68	0.90
49361542--49361576	15	2.2	16	95	5	63	31	2	0	65	1.07
49365609--49365633	3	8.3	3	100	0	50	0	32	0	68	0.90
49372687--49372737	21	2.4	21	83	6	59	37	1	17	43	1.61
49373185--49373252	24	2.9	24	86	2	84	17	26	23	32	1.97
49375702--49375840	46	3.0	46	91	0	224	36	10	23	28	1.89
49383820--49383899	24	3.3	24	85	1	97	16	25	22	36	1.94
49384989--49385082	48	1.9	48	84	2	125	43	20	12	23	1.86
49386354--49386400	23	2.0	25	87	8	71	68	6	2	23	1.24
49386753--49386820	32	2.2	29	75	17	57	48	5	4	41	1.47
49388567--49388616	25	2.0	24	81	14	57	66	0	4	30	1.10
49391050--49391084	16	2.2	16	89	0	52	40	2	31	25	1.70
49391439--49391504	29	2.2	29	82	15	73	27	3	6	63	1.32
49391452--49391515	29	2.2	29	83	10	78	31	3	4	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49392501--49392543	23	1.9	23	85	4	61	39	6	4	48	1.51
49393086--49393280	98	2.0	98	94	0	345	36	25	10	27	1.88
49393952--49394001	26	2.0	26	88	4	75	56	4	8	32	1.47
49394758--49394849	19	4.8	19	89	0	148	38	14	8	39	1.77
49394758--49394849	38	2.4	38	100	0	184	38	14	8	39	1.77
49395027--49395616	84	6.8	85	72	12	386	27	23	20	28	1.99
49395025--49395537	89	5.9	88	73	12	321	27	24	20	27	1.99
49395034--49395623	44	13.7	43	72	11	372	28	23	20	27	1.99
49395015--49395620	217	2.8	217	94	0	1068	27	23	20	28	1.99
49395700--49396186	44	11.1	44	65	11	199	24	26	20	28	1.99
49395608--49396260	132	4.9	132	94	0	1144	24	25	20	28	1.99
49397517--49397553	8	4.8	8	81	18	51	0	2	10	86	0.67
49397512--49397552	15	2.7	16	85	11	59	2	2	9	85	0.78
49403310--49403504	98	2.0	98	93	0	336	36	24	10	28	1.88
49404980--49405066	19	4.5	19	88	5	138	37	13	9	39	1.77
49404957--49405066	40	2.7	38	86	8	139	40	13	8	38	1.75
49418721--49418749	2	14.5	2	100	0	58	51	48	0	0	1.00
49419466--49419593	59	2.2	60	82	2	152	42	7	15	34	1.74
49427567--49427657	40	2.3	40	80	3	112	37	21	19	20	1.95
49427955--49428011	21	2.6	21	81	10	53	15	1	38	43	1.57
49427980--49428096	7	15.0	8	69	14	59	13	0	41	45	1.44
49428607--49428696	43	2.1	43	89	4	137	26	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49428613--49428711	43	2.3	43	82	3	119	25	18	26	30	1.98
49429184--49429216	5	6.6	5	100	0	66	39	0	0	60	0.97
49436236--49436364	36	3.4	38	72	16	115	41	11	10	35	1.77
49436234--49436387	72	2.1	73	82	9	181	42	11	11	33	1.78
49436325--49436417	17	5.4	17	80	7	98	47	10	10	31	1.73
49436325--49436416	33	2.6	35	79	10	98	47	10	9	31	1.71
49436357--49436421	16	3.7	18	84	11	64	50	7	10	30	1.65
49436595--49436641	20	2.5	19	77	16	53	44	8	17	29	1.78
49437002--49437134	38	3.4	37	88	7	185	0	18	0	81	0.70
49437011--49437131	15	7.9	15	81	9	138	0	19	0	80	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196