genome.fa.s25.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  121  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36540864--36540956	44	2.1	44	83	0	114	35	17	23	23	1.95
36542395--36542433	11	3.8	10	86	13	53	20	0	0	79	0.73
36544596--36544942	47	7.4	47	93	0	586	28	30	8	32	1.86
36544812--36544887	22	3.3	22	66	16	64	26	30	10	32	1.90
36549525--36549575	26	2.0	26	88	0	75	27	45	5	21	1.75
36551255--36551279	9	2.8	9	100	0	50	36	0	8	56	1.29
36553751--36553840	25	3.6	25	77	3	83	54	8	10	26	1.63
36563462--36563539	41	1.9	41	81	0	93	38	19	25	16	1.92
36563646--36563758	23	4.7	24	82	6	140	21	24	5	48	1.70
36564576--36564618	16	2.5	17	77	11	52	23	13	0	62	1.31
36570641--36570686	23	2.0	24	86	4	67	50	6	0	43	1.28
36572532--36572590	28	2.1	29	87	9	86	45	0	0	54	0.99
36572603--36572645	20	2.2	18	80	15	50	51	2	0	46	1.13
36572584--36572642	28	2.1	29	87	9	86	47	1	0	50	1.11
36572631--36572687	15	3.5	15	71	17	51	49	1	1	47	1.22
36575301--36575364	30	2.1	31	88	5	96	37	20	14	28	1.91
36590450--36590479	11	2.7	11	100	0	60	66	0	0	33	0.92
36591414--36591457	15	3.0	14	83	6	52	6	6	9	77	1.13
36591703--36591760	22	2.5	23	78	16	66	17	1	13	67	1.32
36592047--36592861	44	17.9	44	72	9	397	28	20	18	32	1.96
36592090--36592502	49	8.8	49	79	9	360	27	21	18	32	1.97
36592094--36592502	93	4.4	96	78	10	382	27	21	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36592276--36592544	49	5.8	46	76	7	184	27	18	17	35	1.94
36592055--36592718	139	4.9	138	81	6	590	28	20	18	32	1.96
36592469--36592630	86	1.9	86	83	3	209	29	19	18	32	1.96
36593778--36593832	6	9.0	6	80	20	53	0	18	0	81	0.68
36593774--36593833	19	3.0	21	81	18	76	0	20	0	80	0.72
36593778--36593807	15	2.0	15	93	0	51	0	23	0	76	0.78
36593778--36593830	11	5.0	11	77	18	51	0	18	0	81	0.70
36596153--36596177	10	2.5	10	100	0	50	44	0	8	48	1.32
36596376--36596438	3	21.7	3	79	20	55	63	1	4	30	1.24
36596377--36596428	8	6.0	8	76	14	50	63	1	1	32	1.16
36598004--36598802	404	2.0	404	93	0	1375	28	22	16	32	1.96
36603448--36603506	29	2.0	31	86	6	86	37	11	16	33	1.86
36606638--36606705	31	2.2	31	84	5	84	39	10	14	35	1.80
36608912--36609011	46	2.1	47	96	3	193	38	26	19	17	1.93
36610706--36610908	42	4.8	42	78	6	205	23	20	21	34	1.96
36610703--36610910	84	2.5	84	82	5	242	25	19	20	34	1.96
36611289--36611339	21	2.4	21	93	0	84	1	43	17	37	1.61
36611224--36611383	87	1.8	87	93	0	266	12	29	17	40	1.86
36616404--36616461	26	2.2	26	90	0	98	41	6	12	39	1.69
36616449--36616744	9	33.4	9	74	9	243	34	1	17	46	1.56
36616449--36616777	34	9.6	34	74	10	197	33	1	17	47	1.58
36616698--36616770	27	2.8	27	83	4	78	31	4	16	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36616764--36616870	29	3.5	29	70	15	90	33	3	13	49	1.59
36616878--36616922	16	2.8	16	90	6	65	31	0	22	46	1.52
36616839--36616969	9	15.4	9	72	15	73	32	1	16	48	1.56
36616878--36616966	41	2.2	42	78	12	103	30	1	19	49	1.55
36616892--36616939	25	1.9	25	86	0	69	33	0	18	47	1.49
36617248--36617294	24	1.9	25	87	12	71	61	2	0	36	1.08
36618249--36618629	191	2.0	191	92	1	629	43	12	25	18	1.84
36619204--36619237	14	2.3	15	85	5	52	35	44	2	17	1.64
36619289--36619332	21	2.1	21	83	8	54	38	36	0	25	1.56
36620072--36620703	114	5.7	112	78	9	623	24	20	19	35	1.95
36620080--36620702	227	2.8	227	82	5	706	23	20	19	35	1.95
36620072--36620572	113	4.4	113	82	3	612	25	19	18	36	1.95
36620477--36620666	100	1.9	100	87	7	278	26	22	17	33	1.96
36627664--36627688	12	2.1	12	100	0	50	48	8	0	44	1.32
36630379--36630416	15	2.5	15	95	0	67	21	0	5	73	1.02
36630445--36630500	11	5.1	11	85	6	78	55	0	0	44	0.99
36635489--36635675	98	1.9	98	92	0	311	26	11	23	37	1.89
36646996--36647730	44	16.7	43	65	14	270	29	19	25	24	1.99
36646989--36647751	132	5.8	132	95	0	1310	30	19	25	24	1.98
36646989--36647840	396	2.2	396	89	3	1245	30	20	24	25	1.98
36650066--36650116	23	2.3	22	80	9	59	64	5	0	29	1.17
36660546--36660581	18	2.1	18	89	5	56	61	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36661739--36661789	16	3.2	16	83	8	68	21	0	1	76	0.88
36662032--36662254	111	2.0	111	88	0	329	25	21	21	31	1.98
36662143--36662886	128	5.8	128	88	1	986	26	23	19	30	1.98
36662692--36662869	44	4.0	44	65	16	107	29	24	16	29	1.97
36662550--36663286	132	5.6	132	89	2	1006	28	24	18	28	1.98
36662833--36663145	44	7.1	45	63	12	103	30	25	17	26	1.97
36662853--36663051	44	4.6	44	66	13	117	30	26	16	26	1.97
36662164--36663267	384	2.8	392	82	4	1020	27	24	18	29	1.98
36663332--36663593	88	3.0	89	83	2	343	22	22	24	30	1.99
36664813--36664860	7	6.7	7	92	2	78	16	10	0	72	1.10
36664805--36664852	14	3.4	14	86	11	71	16	10	0	72	1.10
36664805--36664860	21	2.6	21	88	8	78	17	10	0	71	1.14
36670669--36670704	18	2.1	18	89	5	56	61	0	2	36	1.11
36677057--36677100	23	1.9	22	82	17	54	38	22	0	38	1.55
36677199--36677274	23	3.3	23	90	0	116	31	21	22	25	1.98
36681971--36682231	94	2.8	93	78	9	271	32	18	23	25	1.97
36686492--36686621	41	3.1	41	88	2	188	31	20	20	27	1.97
36686492--36686600	42	2.6	42	92	1	175	32	20	20	27	1.97
36694218--36694275	30	1.9	30	82	6	73	27	13	3	55	1.55
36697120--36697151	4	8.0	4	92	0	55	46	25	3	25	1.67
36701326--36701354	6	4.8	6	100	0	58	0	0	34	65	0.93
36705946--36706003	9	6.1	10	80	8	50	32	0	6	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36705957--36706010	28	2.0	27	85	3	72	40	0	5	53	1.24
36710841--36710877	9	4.1	9	92	0	65	45	13	10	29	1.77
36715024--36715121	31	3.2	30	74	9	90	44	2	17	35	1.60
36717088--36717196	35	3.1	35	78	10	116	19	21	24	34	1.96
36725207--36725241	18	2.0	18	88	5	54	40	28	2	28	1.71
36728848--36728895	25	2.0	24	83	4	60	37	20	25	16	1.93
36734813--36734850	20	1.9	19	89	5	58	31	2	23	42	1.68
36737046--36737096	22	2.3	23	80	10	61	9	15	9	64	1.48
36737474--36737498	8	3.1	8	100	0	50	52	0	0	48	1.00
36745695--36745761	31	2.3	27	78	14	71	40	10	8	40	1.71
36747495--36747570	23	3.3	23	96	0	143	31	26	21	21	1.98
36747796--36747834	18	2.2	17	86	13	53	46	20	0	33	1.51
36754844--36754919	23	3.3	23	96	0	143	31	26	21	21	1.98
36757734--36757759	11	2.4	11	100	0	52	26	0	0	73	0.84
36759262--36759294	13	2.7	12	90	9	57	3	6	0	90	0.52
36762946--36762984	15	2.5	15	95	4	69	46	5	15	33	1.68
36774938--36774998	30	2.0	30	83	6	77	63	3	6	26	1.34
36801397--36801449	23	2.4	22	75	9	54	9	18	1	69	1.25
36809824--36809852	3	9.7	3	100	0	58	31	0	0	68	0.89
36822414--36822453	12	3.5	12	90	6	57	37	0	2	60	1.11
36832876--36832922	10	4.6	10	79	10	51	78	0	10	10	0.96
36832884--36832928	21	2.0	23	91	8	76	71	0	11	17	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36833879--36833945	21	3.2	22	76	18	72	34	8	1	55	1.40
36833915--36833994	3	25.3	3	76	7	70	32	3	3	60	1.32
36840216--36840330	44	2.6	44	83	5	126	29	19	21	29	1.97
36840249--36840341	44	2.1	44	83	0	123	31	17	23	27	1.97
36840134--36840442	138	2.2	138	84	4	383	33	17	21	27	1.95
36840257--36840751	94	5.3	93	80	5	478	34	19	18	27	1.95
36840294--36840765	189	2.5	187	82	6	553	36	18	18	26	1.94
36841304--36841369	31	2.2	31	86	8	91	60	13	22	3	1.47
36841901--36841929	13	2.3	13	94	5	51	34	0	3	62	1.12
36856785--36856849	3	20.7	3	81	9	76	64	0	6	29	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196