Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  15  of  196  ( 23409 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4265756--4265950
84
2.3
84
86
2
259
18
20
22
38
1.93
4265746--4265950
45
5.0
39
74
17
155
19
19
21
39
1.93
4268517--4268618
42
2.4
42
88
0
141
15
21
17
45
1.86
4271127--4271163
4
9.2
4
88
11
58
78
0
0
21
0.75
4276763--4276846
42
2.0
42
95
0
150
32
52
4
10
1.57
4288672--4288715
16
2.6
16
89
10
61
34
0
0
65
0.93
4288672--4288742
19
3.9
17
80
15
72
30
1
0
67
0.99
4288672--4288723
17
2.9
17
83
16
70
32
0
0
67
0.91
4288672--4288741
36
2.0
35
83
8
88
31
1
0
67
1.00
4288672--4288744
8
8.1
9
70
22
55
31
1
0
67
1.00
4288672--4288741
18
4.0
17
76
10
70
31
1
0
67
1.00
4289996--4290069
36
2.1
36
100
0
148
27
17
18
36
1.94
4291620--4291670
25
2.0
26
92
3
86
25
7
13
52
1.67
4291665--4292250
31
19.1
30
72
8
349
29
7
17
44
1.77
4291675--4292250
92
6.3
92
88
3
732
30
7
17
44
1.77
4291674--4292203
61
8.7
61
71
11
300
30
7
17
44
1.77
4296276--4296307
16
2.0
16
93
0
55
25
15
0
59
1.36
4296534--4296724
51
3.8
51
72
13
187
32
27
15
24
1.95
4296527--4296711
101
1.8
102
88
5
277
33
27
15
23
1.95
4303486--4303584
47
2.1
47
81
9
114
35
2
1
61
1.14
4305329--4305403
18
4.2
18
80
0
87
28
21
16
34
1.94
4315752--4315789
17
2.2
17
90
0
58
76
2
7
13
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4317299--4317324
13
2.0
13
100
0
52
30
0
15
53
1.42
4318470--4318631
50
3.3
49
78
6
148
29
22
25
22
1.99
4318502--4318631
49
2.6
50
79
6
140
31
20
23
23
1.98
4330389--4330475
34
2.5
34
94
1
147
28
5
17
48
1.70
4331809--4331880
34
2.1
34
86
0
99
43
8
15
33
1.76
4332212--4332398
94
2.0
94
97
1
358
52
11
15
20
1.73
4332613--4332675
31
2.1
31
96
3
119
20
6
12
60
1.54
4340659--4340704
15
2.9
15
81
18
58
36
0
4
58
1.18
4351591--4351634
22
2.0
23
86
4
63
59
6
6
27
1.49
4351849--4351900
16
3.3
15
86
5
68
42
1
23
32
1.65
4357026--4357060
18
2.0
17
88
5
52
54
0
0
45
0.99
4357052--4357081
15
1.9
16
93
6
53
50
6
0
43
1.28
4357172--4357201
15
1.9
16
93
6
53
50
6
0
43
1.28
4357006--4357874
120
7.2
120
95
1
1564
51
4
1
42
1.31
4357248--4357300
16
3.4
17
73
21
53
56
0
0
43
0.99
4357292--4357321
15
1.9
16
93
6
53
50
6
0
43
1.28
4357386--4357419
17
2.0
17
88
11
52
55
0
0
44
0.99
4357411--4357440
15
1.9
16
93
6
53
50
6
0
43
1.28
4357531--4357560
15
1.9
16
93
6
53
50
6
0
43
1.28
4357606--4357659
15
3.4
16
80
19
53
53
0
0
46
1.00
4357625--4357659
18
2.0
17
88
5
52
54
0
0
45
0.99
4357651--4357680
15
1.9
16
93
6
53
50
6
0
43
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4357727--4357779
16
3.4
17
73
21
53
56
0
0
43
0.99
4357771--4357800
15
1.9
16
93
6
53
50
6
0
43
1.28
4358498--4358547
26
1.9
26
88
8
75
44
0
0
56
0.99
4365734--4365774
22
1.9
21
90
5
64
21
0
24
53
1.46
4367393--4367446
28
1.9
28
92
0
90
24
20
25
29
1.99
4371189--4371228
8
5.0
8
93
0
62
30
12
32
25
1.92
4379913--4379951
21
1.9
19
85
10
51
48
5
0
46
1.24
4380591--4380660
17
4.1
16
74
17
52
44
1
0
54
1.09
4380625--4380660
17
2.1
17
90
10
56
52
0
0
47
1.00
4385087--4385143
29
1.9
30
86
10
82
68
1
1
28
1.09
4385158--4385205
21
2.3
21
78
7
53
64
6
4
25
1.35
4385158--4385200
21
2.0
22
86
4
61
65
6
4
23
1.37
4395240--4395345
51
2.0
53
85
3
144
18
21
31
28
1.97
4399253--4399299
23
2.1
21
81
14
51
48
25
2
23
1.62
4401597--4401773
45
4.0
45
85
4
234
23
16
25
33
1.95
4404446--4404519
30
2.5
30
84
4
96
24
25
10
39
1.88
4404505--4404706
30
6.8
30
76
3
142
20
24
14
40
1.90
4404476--4404665
60
3.2
60
76
5
186
20
25
13
40
1.89
4413834--4413864
16
1.9
16
93
0
53
32
25
16
25
1.96
4435212--4435250
20
2.0
20
84
0
51
46
7
0
46
1.31
4440441--4440483
17
2.5
17
79
20
54
25
13
20
39
1.90
4440548--4440589
16
2.6
16
81
7
50
33
11
14
40
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4442533--4442588
21
2.7
21
88
0
85
26
8
35
28
1.87
4443761--4443932
58
2.9
59
76
7
170
36
14
16
31
1.89
4443835--4443953
61
2.0
60
80
8
134
36
16
17
29
1.92
4444482--4444671
97
2.0
97
93
0
326
40
8
17
33
1.80
4446315--4446374
25
2.3
26
82
5
77
13
10
8
68
1.39
4461622--4461677
15
3.6
15
79
9
58
32
17
14
35
1.90
4464558--4464617
30
2.0
31
83
9
79
20
36
0
43
1.52
4465976--4466039
32
2.0
32
84
6
85
21
9
12
56
1.64
4477612--4477668
19
3.1
19
75
14
55
15
7
3
73
1.18
4477667--4477699
13
2.4
14
90
5
50
18
0
6
75
1.00
4477667--4477709
19
2.3
19
84
4
52
20
0
4
74
1.00
4477739--4477781
21
2.0
23
90
9
72
41
0
0
58
0.98
4477762--4477905
14
11.5
13
66
26
64
40
1
1
56
1.17
4477773--4477817
22
2.1
21
88
8
65
40
0
0
60
0.97
4478005--4478034
13
2.3
13
100
0
60
46
0
0
53
1.00
4478001--4478038
20
1.9
20
88
0
58
44
0
0
55
0.99
4477779--4478046
147
1.9
146
80
10
329
46
1
1
50
1.23
4478118--4478144
14
1.9
14
100
0
54
59
3
0
37
1.15
4478110--4478170
24
2.5
24
84
5
79
55
4
1
37
1.31
4478303--4478369
19
3.4
19
70
13
55
52
4
7
35
1.50
4478813--4478867
20
2.7
20
82
2
74
34
1
0
63
1.05
4478869--4478912
19
2.2
20
92
4
72
47
6
0
45
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4478849--4478918
16
4.2
16
74
16
52
38
4
0
57
1.19
4479298--4479371
21
3.4
22
81
7
80
54
1
1
43
1.17
4479358--4479386
12
2.4
12
100
0
58
62
0
6
31
1.22
4479438--4479482
9
5.0
9
84
10
56
73
4
0
22
1.01
4479505--4479556
19
2.7
19
80
11
61
75
1
9
13
1.14
4479540--4479569
16
1.9
15
93
6
51
83
0
3
13
0.77
4480583--4480637
7
7.4
7
79
18
58
69
10
18
1
1.27
4481253--4481286
17
1.9
17
88
5
50
32
32
29
5
1.81
4481691--4481746
27
2.2
26
87
6
78
28
37
10
23
1.88
4483864--4483893
2
15.5
2
93
6
53
50
0
0
50
1.00
4484915--4485033
41
2.9
41
82
2
141
29
26
16
26
1.97
4486673--4486698
13
2.0
13
100
0
52
46
23
0
30
1.53
4491931--4491969
18
2.2
17
86
13
53
33
0
20
46
1.51
4492195--4492292
23
4.3
23
90
2
162
20
21
26
31
1.98
4492197--4492285
45
2.0
45
95
0
160
19
22
26
31
1.97
4496662--4496715
26
2.1
26
85
0
72
35
12
25
25
1.92
4496917--4496977
20
3.2
20
88
4
90
24
1
0
73
0.92
4496917--4496978
10
6.5
10
72
9
58
25
1
0
72
0.94
4503770--4503891
54
2.3
54
76
11
124
24
27
28
19
1.99
4510159--4510363
100
2.0
100
98
0
392
28
20
17
34
1.95
4530004--4530057
24
2.2
24
83
6
65
29
3
29
37
1.75
4535183--4535216
16
2.1
17
88
5
52
67
0
2
29
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4535192--4535242
18
2.9
18
75
11
52
66
0
7
25
1.18
4536720--4536764
14
3.1
14
78
12
54
51
8
4
35
1.54
4536851--4536893
14
3.1
14
76
6
52
48
0
11
39
1.40
4537068--4537102
3
11.7
3
93
0
61
65
2
0
31
1.07
4538804--4538910
28
4.0
25
69
20
67
35
1
0
61
1.13
4538814--4538941
51
2.6
49
80
12
136
36
3
0
60
1.13
4538868--4538931
32
2.1
30
82
11
76
35
3
0
60
1.12
4538827--4538941
50
2.3
50
80
10
128
37
2
0
60
1.11
4538894--4538940
20
2.3
21
79
17
55
34
4
0
61
1.15
4540245--4540271
6
4.5
6
100
0
54
48
0
18
33
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196