genome.fa.s25.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  120  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36270036--36270169	39	3.4	38	74	7	117	37	20	20	20	1.95
36270206--36270446	41	5.9	41	90	1	376	22	22	24	29	1.99
36271373--36271635	136	2.0	134	83	6	340	26	1	30	41	1.63
36271584--36271613	15	2.0	15	93	0	51	23	0	33	43	1.54
36271371--36271671	129	2.3	124	81	9	329	27	1	27	42	1.63
36272441--36273010	141	4.0	141	88	6	733	40	14	11	33	1.82
36273020--36273064	21	2.2	20	84	4	54	24	48	2	24	1.62
36277549--36277726	43	4.1	43	85	0	230	22	15	29	33	1.94
36279677--36279734	30	1.9	30	89	0	89	37	12	13	36	1.82
36280167--36280235	29	2.3	30	77	2	77	53	7	8	30	1.59
36281010--36281037	12	2.3	12	100	0	56	67	14	0	17	1.22
36281120--36281195	27	2.8	27	84	4	91	26	7	22	43	1.80
36281120--36281195	9	8.4	9	82	5	73	26	7	22	43	1.80
36281721--36281977	128	2.0	128	99	0	505	25	19	28	26	1.98
36285552--36285701	41	3.6	41	89	0	219	26	22	26	25	2.00
36292486--36292538	12	4.2	12	77	13	52	45	3	7	43	1.50
36293202--36293351	41	3.6	41	88	0	210	26	22	26	25	2.00
36294101--36294147	23	2.0	24	87	8	69	27	23	6	42	1.78
36294879--36295063	46	4.0	46	93	0	307	28	27	9	35	1.88
36296290--36296337	17	2.9	17	87	3	62	54	20	0	25	1.45
36298725--36299031	151	2.0	148	81	6	339	39	18	15	25	1.91
36299060--36299249	94	2.0	94	89	2	292	39	15	14	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36300366--36300476	31	3.6	31	77	10	111	32	10	9	46	1.72
36300469--36300514	23	2.0	23	88	12	69	43	13	0	43	1.43
36304200--36304224	12	2.1	12	100	0	50	24	36	0	40	1.55
36312467--36312506	14	2.9	15	85	10	50	50	12	0	37	1.41
36315097--36315177	3	26.3	3	72	14	58	60	3	4	30	1.35
36316679--36317358	44	15.7	44	69	11	297	28	21	19	31	1.97
36316679--36316972	129	2.3	129	91	0	462	28	20	19	31	1.97
36316802--36317359	175	3.2	175	93	1	919	28	21	19	31	1.97
36323422--36323446	8	3.1	8	100	0	50	76	0	0	24	0.80
36323861--36323941	3	26.3	3	72	14	58	60	3	4	30	1.35
36327155--36327219	33	2.0	33	96	0	121	41	12	9	36	1.75
36327526--36327572	24	2.0	24	83	8	60	31	12	17	38	1.87
36333867--36333908	19	2.2	19	86	0	57	50	0	21	28	1.49
36334267--36334352	25	3.3	25	72	18	68	38	0	17	44	1.49
36334704--36334758	27	2.0	27	82	0	65	52	1	21	23	1.56
36340468--36340566	42	2.3	43	84	8	139	30	22	16	31	1.95
36340684--36341168	45	10.9	44	79	5	424	28	19	18	33	1.96
36340687--36341168	89	5.4	88	79	5	504	28	19	19	33	1.96
36340684--36341168	178	2.7	178	90	0	720	28	19	18	33	1.96
36353067--36353120	19	2.8	20	80	8	58	75	1	3	18	1.03
36354375--36354416	21	2.0	21	86	9	59	9	9	57	23	1.60
36356020--36356049	14	2.2	14	94	5	53	13	13	23	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36356034--36356075	19	2.2	20	86	4	59	19	16	11	52	1.74
36360825--36360865	21	1.9	22	90	5	66	29	12	9	48	1.72
36371434--36371476	18	2.4	18	80	7	52	51	0	2	46	1.13
36374893--36374927	3	11.7	3	100	0	70	34	0	0	65	0.93
36375379--36375433	22	2.5	22	84	0	65	34	16	25	23	1.95
36381033--36381263	127	1.8	126	79	3	266	32	13	17	37	1.88
36381446--36381491	20	2.3	20	85	7	58	60	2	6	30	1.34
36382617--36382656	3	13.3	3	94	0	71	70	0	30	0	0.88
36383633--36383959	44	7.4	44	65	12	161	25	25	18	29	1.98
36383623--36383968	132	2.6	132	92	0	575	25	25	18	30	1.98
36385406--36385438	11	3.0	11	90	0	57	0	21	0	78	0.75
36385442--36385510	34	2.1	33	91	2	111	20	1	8	69	1.23
36397627--36397664	19	2.0	20	85	10	53	34	13	10	42	1.78
36402582--36402652	27	2.6	27	82	4	90	22	21	26	29	1.99
36409578--36409653	26	2.9	26	86	0	80	36	19	22	21	1.95
36409590--36409674	26	3.2	26	81	1	62	35	20	22	22	1.96
36409708--36409789	36	2.4	32	79	14	101	30	13	18	37	1.89
36409732--36409791	20	3.2	20	65	26	58	30	13	18	38	1.89
36409719--36409791	36	2.0	36	91	0	119	31	15	16	36	1.90
36409868--36409956	27	3.3	27	93	3	144	20	21	19	39	1.93
36411432--36411462	14	2.2	14	94	0	53	48	12	0	38	1.42
36412840--36412873	15	2.2	16	89	5	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36413784--36413813	12	2.4	13	94	5	53	20	30	0	50	1.49
36422334--36422386	24	2.3	23	80	3	61	52	9	5	32	1.57
36422466--36422504	16	2.3	18	91	8	64	58	5	0	35	1.20
36423257--36423291	15	2.2	17	90	10	56	5	14	0	80	0.89
36426172--36426205	15	2.2	16	89	5	52	44	0	0	55	0.99
36428493--36428523	14	2.2	14	94	0	53	48	12	0	38	1.42
36430139--36430185	11	4.2	11	88	2	67	23	25	4	46	1.70
36430371--36430421	24	2.1	24	85	7	68	29	1	1	66	1.13
36431118--36431172	28	2.0	28	88	0	83	21	34	36	7	1.81
36431113--36431190	28	2.8	28	78	1	68	21	32	37	8	1.85
36435180--36435375	94	2.1	93	92	0	320	36	2	4	56	1.33
36437055--36437134	41	2.0	39	88	7	117	33	0	36	30	1.58
36437727--36437761	18	1.9	18	100	0	70	11	28	0	60	1.32
36440244--36440437	61	3.2	61	71	11	191	43	2	5	48	1.38
36440202--36440468	120	2.2	120	93	0	453	43	1	4	49	1.34
36440412--36440446	18	2.0	17	88	5	52	45	0	0	54	0.99
36440610--36440700	45	2.0	45	85	2	121	37	28	6	27	1.82
36440681--36440749	16	4.2	16	96	3	129	37	37	0	24	1.56
36440681--36440749	33	2.1	32	97	2	129	37	37	0	24	1.56
36451955--36451985	14	2.2	14	100	0	62	54	0	6	38	1.26
36455746--36455780	17	1.9	18	88	11	54	22	22	31	22	1.98
36459193--36459291	3	33.0	3	70	9	51	68	4	5	22	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36459253--36459292	14	2.8	15	82	17	50	75	0	0	25	0.81
36464822--36464856	15	2.2	16	90	5	54	42	0	0	57	0.99
36465970--36466027	28	2.1	28	81	12	66	32	1	1	63	1.14
36467553--36467596	18	2.4	18	88	0	70	20	27	9	43	1.82
36467959--36468153	93	2.1	93	94	0	336	35	2	5	55	1.37
36468092--36468213	55	2.2	55	84	5	149	40	2	4	51	1.36
36468179--36468208	9	3.4	9	90	9	53	36	0	0	63	0.95
36474376--36474420	15	3.0	15	80	0	54	73	0	13	13	1.10
36477924--36477972	24	2.0	24	100	0	98	36	12	22	28	1.90
36482405--36482436	14	2.2	15	94	5	57	50	3	6	40	1.43
36482710--36482744	18	2.0	17	94	5	61	37	0	0	62	0.95
36482711--36482767	25	2.3	24	82	14	64	31	0	0	68	0.90
36482975--36483027	24	2.3	23	80	3	61	52	9	5	32	1.57
36483107--36483145	16	2.3	18	86	8	55	58	5	2	33	1.33
36489556--36489667	31	3.7	31	77	9	106	41	12	11	34	1.79
36493461--36494078	44	13.8	44	73	8	229	30	18	16	35	1.93
36493495--36493593	51	1.9	51	85	0	135	29	13	17	40	1.87
36493548--36493769	88	2.5	88	85	1	266	31	14	15	37	1.88
36493715--36494078	88	4.1	87	79	5	340	29	19	16	34	1.94
36497295--36497328	10	3.4	10	83	0	50	11	17	26	44	1.83
36503560--36503611	19	2.7	20	85	11	65	42	5	21	30	1.76
36511015--36511055	21	2.0	21	85	0	55	36	0	4	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36513516--36513558	21	2.1	20	82	4	50	27	6	0	65	1.18
36516305--36516364	31	1.9	31	89	0	93	35	13	10	41	1.78
36533220--36533356	49	2.8	48	88	2	193	35	25	12	26	1.91
36540080--36540838	44	16.7	44	75	9	513	35	16	18	28	1.93
36540080--36540743	89	7.3	88	78	7	431	35	17	18	28	1.93
36540080--36540572	184	2.7	176	80	7	476	35	17	18	28	1.94
36540612--36540792	51	3.7	50	77	13	205	37	17	17	28	1.92
36540308--36540840	89	5.8	95	81	8	416	35	16	19	28	1.94
36540768--36540913	75	1.9	75	80	5	170	30	17	21	30	1.96
36540852--36540946	44	2.2	44	90	0	145	33	17	22	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196