genome.fa.s25.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  133  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39664336--39664512	87	2.0	87	87	0	255	12	29	18	38	1.88
39669927--39670145	25	8.8	25	90	3	261	33	0	20	46	1.51
39669927--39670199	50	5.8	50	80	14	330	33	0	20	46	1.51
39669956--39670195	41	5.4	41	78	16	223	33	0	20	46	1.51
39669923--39670199	66	4.0	68	92	4	382	33	0	19	46	1.51
39669923--39670199	25	11.1	25	88	3	190	33	0	19	46	1.51
39670249--39670300	12	4.3	12	87	0	77	25	1	21	51	1.57
39670242--39670300	24	2.5	24	86	5	77	25	1	20	52	1.56
39670434--39670486	17	3.1	18	74	20	60	58	1	0	39	1.09
39670487--39670551	9	7.0	9	71	13	51	40	0	15	44	1.46
39670516--39670556	18	2.3	18	91	4	66	43	0	14	41	1.45
39674105--39674601	114	4.4	114	83	2	570	27	25	21	26	1.99
39674105--39674598	229	2.2	227	84	1	632	27	25	21	26	1.99
39674497--39674667	71	2.4	73	87	3	231	26	25	20	26	1.99
39674570--39674899	115	2.9	114	86	4	470	24	27	21	26	1.99
39674384--39674789	185	2.2	187	86	2	557	25	25	21	27	2.00
39675009--39675074	22	3.0	23	77	8	82	43	18	6	31	1.74
39675849--39675966	42	2.8	43	82	6	150	30	25	17	26	1.97
39677629--39677703	5	14.8	5	81	13	82	21	0	4	74	0.98
39677761--39677808	24	2.0	25	83	4	62	18	10	0	70	1.15
39677863--39677909	24	2.0	23	87	4	67	21	21	0	57	1.41
39677878--39677902	13	1.9	13	100	0	50	20	24	0	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39678746--39678845	25	4.0	25	68	15	64	25	28	18	29	1.98
39679569--39679673	28	3.8	28	84	2	131	28	20	24	25	1.99
39679550--39679691	56	2.4	61	74	13	152	32	19	22	25	1.98
39680009--39680263	107	2.4	107	84	7	329	17	20	19	42	1.89
39680009--39680274	134	2.0	134	85	5	367	17	20	19	42	1.90
39680010--39680275	27	9.9	27	84	5	308	17	20	19	42	1.89
39686130--39686170	21	1.9	22	85	5	57	12	7	2	78	1.06
39686965--39686996	13	2.5	13	100	0	64	28	18	6	46	1.73
39701862--39701902	21	1.9	22	85	5	57	43	4	14	36	1.67
39704978--39705015	20	1.9	20	89	10	60	34	2	7	55	1.43
39708842--39708964	29	4.4	29	76	9	87	36	21	29	13	1.91
39708880--39708958	26	3.0	26	81	7	88	36	21	30	11	1.89
39712007--39712056	6	8.2	6	82	12	57	46	0	0	54	1.00
39711998--39712044	25	1.9	24	95	4	85	40	0	0	59	0.97
39712080--39712132	20	2.6	19	80	14	52	28	0	7	64	1.21
39721273--39721417	63	2.3	63	86	0	191	26	6	34	33	1.81
39723758--39723820	20	3.0	21	73	17	60	33	3	1	61	1.21
39729199--39729239	21	2.0	21	100	0	82	4	51	4	39	1.45
39731028--39731104	38	2.0	38	100	0	154	42	18	7	31	1.78
39745768--39745820	27	1.9	28	88	3	81	45	1	0	52	1.11
39745923--39745978	20	2.8	20	76	13	60	35	12	5	46	1.65
39746595--39746632	16	2.4	16	90	0	58	39	2	31	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39746863--39747038	93	1.9	94	96	1	327	51	5	1	42	1.34
39746940--39747159	119	1.9	119	96	0	379	51	6	0	40	1.33
39748429--39748495	33	2.0	33	97	0	125	46	16	7	29	1.74
39750161--39750194	17	2.0	17	88	0	50	47	17	2	32	1.63
39751243--39751278	17	2.1	17	100	0	72	36	5	30	27	1.80
39752952--39753012	27	2.3	27	82	5	70	22	26	14	36	1.93
39756684--39756739	29	1.9	29	88	0	85	35	16	12	35	1.86
39757897--39757973	37	2.1	37	90	0	118	48	3	10	37	1.56
39774924--39774961	11	3.7	10	83	16	51	18	2	5	73	1.14
39774896--39774961	20	3.2	20	76	17	71	22	3	4	69	1.20
39778236--39778315	21	4.0	21	85	9	114	36	15	10	38	1.80
39778256--39778319	19	3.3	19	93	4	101	37	15	9	37	1.80
39779023--39779114	19	4.8	19	83	0	121	40	9	13	36	1.77
39779023--39779114	38	2.4	38	96	0	166	40	9	13	36	1.77
39779023--39779140	19	5.9	21	81	5	90	38	8	14	38	1.76
39784472--39784520	12	3.8	12	82	12	53	79	0	20	0	0.73
39784477--39784527	7	7.6	7	80	14	54	76	0	21	1	0.88
39784472--39784527	20	2.8	20	84	7	71	78	0	19	1	0.84
39784484--39784527	6	7.0	6	82	10	52	77	0	20	2	0.88
39785765--39785991	44	5.2	43	84	5	276	27	14	25	32	1.95
39785840--39786026	88	2.1	87	78	6	189	29	16	25	28	1.96
39785760--39786024	132	2.0	132	84	5	349	29	15	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39785976--39786632	132	5.1	132	88	4	978	29	17	22	29	1.97
39785976--39786628	254	2.5	258	89	3	978	30	18	22	29	1.97
39786959--39787050	19	4.8	19	84	0	130	41	9	11	36	1.75
39786959--39787050	38	2.4	38	94	0	157	41	9	11	36	1.75
39788893--39789008	42	2.8	41	75	10	108	45	22	19	12	1.83
39788909--39789020	42	2.7	41	77	13	111	43	20	20	15	1.87
39795563--39795604	18	2.3	18	83	4	57	52	0	0	47	1.00
39797284--39797953	107	6.4	106	87	6	912	38	14	15	31	1.88
39798973--39799060	46	1.9	46	95	0	158	22	13	7	55	1.64
39800428--39800602	89	2.0	89	86	6	248	42	2	4	50	1.37
39800491--39800552	20	3.0	20	85	2	79	45	1	3	50	1.27
39801167--39801220	27	2.0	27	96	0	99	27	7	31	33	1.84
39813775--39813888	54	2.1	53	85	4	156	36	7	3	51	1.48
39817286--39817317	13	2.5	13	94	0	55	31	0	12	56	1.37
39817412--39817653	50	4.7	50	86	4	297	26	24	29	19	1.99
39817412--39817661	100	2.4	103	88	6	364	26	24	29	20	1.99
39820634--39820785	78	1.9	79	89	4	236	46	5	7	41	1.54
39826203--39826259	29	2.0	29	82	0	69	26	14	8	50	1.71
39831392--39831429	19	2.0	19	100	0	76	36	5	21	36	1.76
39832320--39832438	47	2.5	47	78	5	123	54	3	3	38	1.34
39835310--39835334	12	2.1	12	100	0	50	24	0	16	60	1.36
39836461--39836587	59	2.1	61	81	8	154	19	24	7	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39847010--39847052	22	2.0	21	86	13	61	34	0	0	65	0.93
39847003--39847077	38	2.0	38	84	10	100	34	1	0	64	1.02
39854897--39854956	29	2.1	29	90	0	93	41	5	6	46	1.52
39868221--39868280	31	1.9	31	93	0	102	50	11	1	36	1.49
39874615--39874653	3	13.0	3	88	0	60	66	5	0	28	1.12
39878926--39879002	23	3.5	22	76	10	70	35	2	5	57	1.35
39878990--39879016	9	3.0	9	100	0	54	55	0	0	44	0.99
39879393--39879446	25	2.1	26	86	3	74	72	1	1	24	1.05
39879512--39879548	2	19.0	2	94	5	67	0	51	0	48	1.00
39887490--39887669	99	1.8	99	86	0	261	35	11	18	35	1.87
39900957--39900989	17	1.9	17	88	11	50	15	12	6	66	1.42
39903569--39903683	57	1.9	59	82	8	144	41	4	4	49	1.42
39908602--39908639	13	2.9	14	80	11	53	18	13	15	52	1.74
39917083--39917407	46	7.6	45	88	9	404	35	14	21	28	1.93
39917119--39917226	36	3.0	36	95	1	191	37	12	20	29	1.89
39919147--39919199	26	2.0	26	96	0	97	54	16	3	24	1.59
39925703--39925754	15	3.5	15	71	7	52	65	0	0	34	0.93
39926646--39926690	22	2.0	22	100	0	90	48	13	4	33	1.62
39928913--39928996	25	3.4	25	84	0	114	21	26	19	33	1.97
39928912--39929027	25	4.6	25	80	4	108	23	25	20	31	1.98
39930644--39930760	62	1.9	59	84	8	155	50	5	2	41	1.38
39930745--39930799	25	2.2	25	81	12	60	49	5	1	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39931257--39931283	14	1.9	14	100	0	54	37	11	0	51	1.37
39931302--39931340	16	2.4	16	100	0	78	30	20	10	38	1.86
39932409--39932440	15	2.1	15	94	0	55	68	9	6	15	1.36
39935619--39935692	31	2.4	31	83	0	94	54	10	2	32	1.49
39938169--39938754	294	2.0	294	98	0	1145	26	30	10	32	1.90
39940793--39940840	21	2.2	21	85	3	60	35	22	16	25	1.95
39943686--39943743	24	2.4	24	88	0	80	43	18	17	20	1.89
39943746--39943909	25	6.7	23	69	17	73	34	21	25	18	1.96
39944444--39944485	16	2.7	16	81	3	50	23	2	0	73	0.94
39946728--39946813	42	2.0	42	91	4	138	27	0	25	46	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196