genome.fa.s25.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  145  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42912966--42912998	16	2.1	16	100	0	66	33	12	24	30	1.91
42914108--42914135	14	2.0	14	100	0	56	42	28	21	7	1.79
42914462--42914493	14	2.2	15	94	5	57	59	12	15	12	1.61
42915422--42915471	21	2.3	22	79	6	57	30	2	6	62	1.31
42915470--42915520	12	4.6	12	74	18	56	37	1	7	52	1.42
42915466--42915525	16	3.8	16	76	10	52	38	3	6	51	1.45
42919080--42919369	46	6.6	46	86	8	390	28	22	14	34	1.93
42919215--42919369	82	1.9	82	93	0	265	30	21	12	35	1.90
42931159--42931975	44	18.8	42	71	15	388	30	20	22	27	1.98
42931073--42932007	217	4.3	217	89	1	1320	30	20	21	27	1.98
42931161--42932012	89	9.8	88	70	14	419	30	20	21	27	1.98
42931637--42931953	174	1.8	174	80	11	382	30	21	20	26	1.98
42932050--42932095	24	1.9	24	95	0	83	34	19	26	19	1.96
42933660--42933732	22	3.4	21	75	16	69	20	2	1	75	1.00
42933671--42933756	44	2.0	44	81	4	102	24	2	3	69	1.15
42933786--42933837	25	2.1	25	85	7	70	26	0	7	65	1.20
42934883--42934920	19	2.0	19	94	0	67	26	7	15	50	1.72
42937322--42937383	22	2.7	22	90	5	88	48	1	1	48	1.21
42937357--42937394	16	2.4	16	91	4	60	50	2	5	42	1.39
42937443--42937614	86	2.0	86	97	0	326	40	5	7	47	1.54
42938728--42938779	23	2.3	23	82	0	68	50	11	19	19	1.77
42944173--42944208	18	2.1	17	94	5	63	13	38	5	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42946613--42946758	77	1.9	77	84	5	197	28	15	15	39	1.89
42947506--42947539	7	4.9	7	100	0	68	29	14	0	55	1.40
42947998--42948092	36	2.5	38	80	10	104	31	22	1	45	1.59
42950886--42950976	42	2.2	42	93	0	155	23	25	13	38	1.91
42956042--42956080	19	2.1	19	85	9	53	25	2	5	66	1.25
42962760--42962801	11	3.6	11	81	12	57	35	0	4	59	1.19
42977251--42977293	17	2.4	18	78	17	54	55	0	0	44	0.99
42979224--42979267	18	2.5	17	77	3	52	52	2	4	40	1.34
42984143--42984620	261	1.8	261	83	4	642	39	10	14	35	1.81
42984391--42984963	308	1.9	310	85	2	794	39	10	14	35	1.81
42985747--42985779	17	2.0	17	88	5	50	42	0	0	57	0.98
42987105--42987142	18	2.1	18	90	0	58	42	7	36	13	1.73
43007304--43007339	2	18.0	2	94	0	63	0	2	50	47	1.15
43010154--43010186	16	2.1	16	100	0	66	48	6	6	39	1.53
43010489--43010531	22	2.0	22	85	0	59	32	2	6	58	1.38
43012435--43012484	15	3.3	15	82	2	55	48	44	6	2	1.39
43012420--43012482	25	2.5	26	81	2	74	47	46	4	1	1.33
43013598--43013683	3	29.0	3	70	11	52	31	3	5	59	1.38
43015962--43016008	19	2.5	19	86	6	60	25	19	10	44	1.82
43017246--43017282	17	2.1	18	90	5	58	29	24	0	45	1.53
43018033--43018076	16	2.6	17	86	13	65	81	0	15	2	0.78
43018041--43018081	16	2.7	15	88	7	64	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43021079--43021136	30	1.9	30	85	0	80	41	1	24	32	1.65
43021348--43021379	13	2.5	13	94	0	55	31	0	12	56	1.37
43021474--43021715	50	4.7	50	86	4	297	26	24	29	19	1.99
43021474--43021723	100	2.4	103	88	6	364	26	24	29	20	1.99
43023327--43024106	50	15.9	49	78	8	782	32	22	19	25	1.97
43023264--43024092	100	8.4	100	90	1	1135	32	21	19	26	1.97
43024427--43024476	15	3.3	15	82	2	55	48	44	6	2	1.39
43024412--43024474	25	2.5	26	81	2	74	47	46	4	1	1.33
43027538--43027605	20	3.4	20	72	8	75	29	26	14	29	1.95
43027525--43027612	40	2.2	40	100	0	176	27	27	15	29	1.96
43027554--43027617	20	3.2	20	67	6	58	25	26	18	29	1.98
43030747--43031097	181	2.0	174	85	5	470	29	18	13	38	1.89
43033128--43033166	21	1.9	20	89	5	60	41	28	17	12	1.87
43048037--43050442	931	2.6	931	96	0	4319	32	22	15	29	1.94
43059040--43059077	19	2.0	19	100	0	76	5	5	26	63	1.37
43059044--43059080	11	3.6	11	79	20	53	5	8	24	62	1.44
43060128--43060418	144	2.0	143	94	0	510	20	14	10	55	1.68
43060158--43060450	144	2.0	142	86	5	401	22	13	10	53	1.69
43062304--43062676	187	2.0	188	96	0	694	32	11	16	40	1.84
43063583--43063638	22	2.5	22	97	0	103	37	23	16	23	1.93
43064023--43064051	14	2.0	15	93	6	51	51	27	0	20	1.47
43064208--43064259	23	2.3	22	83	9	68	11	42	25	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43067545--43067598	19	2.8	20	83	5	67	35	5	18	40	1.74
43073461--43073574	21	5.5	21	73	1	95	48	15	18	17	1.82
43073482--43073631	42	3.6	42	80	3	151	46	14	20	19	1.84
43076781--43076828	17	2.8	18	81	9	64	31	12	4	52	1.58
43086486--43086540	30	1.9	28	82	17	69	54	0	1	43	1.10
43087833--43087871	14	2.7	15	80	8	53	48	0	0	51	1.00
43087790--43087857	32	2.1	35	81	13	83	38	4	0	57	1.19
43097406--43097430	3	8.3	3	100	0	50	68	0	0	32	0.90
43107684--43107762	21	3.8	21	72	20	67	46	1	1	50	1.17
43107932--43108003	26	2.7	26	78	4	72	44	25	4	26	1.72
43110068--43110100	7	4.7	7	96	0	57	48	0	21	30	1.50
43117830--43117873	19	2.3	19	88	0	61	63	0	2	34	1.07
43135915--43135962	22	2.2	22	85	7	62	35	10	4	50	1.56
43138019--43138059	20	2.0	21	85	4	57	65	4	2	26	1.25
43139686--43139818	66	2.0	66	82	5	162	36	18	9	34	1.84
43142415--43142454	20	2.0	20	100	0	80	25	15	25	35	1.94
43150813--43150876	31	2.1	31	97	2	121	42	9	6	42	1.62
43154230--43154327	34	2.9	33	79	7	108	42	0	12	44	1.41
43154423--43155071	126	5.2	126	87	1	854	37	16	16	29	1.91
43160847--43160877	16	1.9	16	93	0	53	25	9	0	64	1.24
43162892--43162938	24	1.9	24	83	12	60	44	0	4	51	1.21
43163187--43163283	50	1.9	50	87	0	140	41	18	4	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43169811--43169857	23	2.0	23	100	0	94	57	8	8	25	1.57
43171906--43172111	46	4.5	46	91	1	319	29	20	16	34	1.94
43174246--43174275	13	2.3	13	94	0	51	66	0	3	30	1.07
43174431--43174462	15	2.1	16	94	5	57	40	0	0	59	0.97
43180123--43180149	5	5.4	5	100	0	54	59	0	0	40	0.98
43187343--43187388	2	23.0	2	95	0	83	47	2	50	0	1.13
43193121--43193224	45	2.3	45	91	0	163	33	17	11	37	1.86
43200456--43200480	3	8.3	3	100	0	50	68	0	32	0	0.90
43207402--43207683	152	1.9	152	99	0	555	27	20	24	26	1.99
43214433--43214482	24	2.0	26	84	7	68	12	20	10	58	1.62
43215697--43215946	44	5.8	43	75	10	143	28	18	24	28	1.98
43215825--43215967	45	3.2	44	83	5	164	28	19	26	25	1.99
43215890--43215985	45	2.1	45	84	0	120	32	21	25	20	1.98
43219280--43219414	58	2.3	57	82	3	153	15	2	26	55	1.52
43219310--43219414	29	3.6	29	88	0	147	15	1	22	60	1.45
43221633--43221857	10	24.0	9	68	20	99	33	2	3	60	1.26
43230679--43230723	20	2.2	21	81	18	60	35	0	8	55	1.31
43230679--43230728	19	2.5	20	84	15	61	32	0	8	60	1.26
43232401--43232454	23	2.3	23	81	6	65	35	16	12	35	1.87
43235906--43235950	17	2.6	17	89	0	63	24	8	33	33	1.86
43244449--43244474	3	8.7	3	100	0	52	34	0	0	65	0.93
43250986--43251132	73	2.0	73	83	0	186	36	6	14	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43254045--43254122	25	3.1	25	66	14	61	16	28	16	38	1.91
43254102--43254163	25	2.5	25	86	0	88	17	25	25	30	1.97
43256281--43256425	42	3.4	42	83	3	184	31	13	25	29	1.93
43267647--43267686	21	1.9	21	94	0	71	30	25	17	27	1.97
43268162--43268235	38	2.0	37	82	15	91	37	1	40	20	1.61
43268237--43268278	19	2.2	19	86	0	57	45	0	30	23	1.53
43268200--43268338	73	1.9	74	79	10	160	46	0	30	23	1.58
43276497--43276588	40	2.3	40	82	0	121	32	20	3	43	1.68
43276558--43276605	13	3.7	13	80	5	53	43	20	2	33	1.64
43276551--43276612	26	2.3	27	83	10	83	37	19	1	41	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196