genome.fa.s25.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  109  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32807478--32807580	51	2.0	51	98	0	197	29	8	13	48	1.72
32810206--32810246	21	2.0	21	85	0	55	31	2	4	60	1.30
32814457--32814499	21	2.0	21	86	8	61	34	0	6	58	1.25
32814770--32814809	16	2.5	17	84	12	57	32	17	5	45	1.70
32814987--32815026	22	1.9	22	90	10	66	12	2	32	52	1.52
32824943--32824987	20	2.2	20	88	0	63	42	11	8	37	1.72
32831410--32831585	73	2.4	73	85	2	239	23	25	27	23	2.00
32831481--32832170	114	6.0	114	81	1	790	25	22	25	26	2.00
32831481--32832170	227	3.0	226	84	3	837	25	22	25	26	2.00
32832405--32832492	37	2.4	36	86	7	122	20	2	39	37	1.65
32832574--32832607	7	4.9	7	92	0	59	17	0	38	44	1.49
32832562--32832607	21	2.2	21	88	0	65	19	2	30	47	1.61
32832574--32832621	14	3.4	14	85	0	60	20	0	33	45	1.52
32832574--32832621	21	2.3	21	85	0	60	20	0	33	45	1.52
32832953--32832986	15	2.3	15	94	0	59	14	0	41	44	1.45
32832956--32832986	7	4.3	7	92	8	53	16	0	38	45	1.47
32833024--32833056	16	2.1	16	88	5	50	60	6	0	33	1.21
32833382--32833964	114	5.1	114	91	0	923	26	16	21	34	1.95
32834168--32834500	173	1.9	175	91	1	544	22	39	10	27	1.87
32835545--32835603	9	6.8	9	73	5	50	49	20	1	28	1.59
32835716--32835975	9	28.4	9	71	14	176	44	16	1	37	1.56
32835718--32835808	25	3.6	25	78	12	96	51	19	0	28	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32835727--32835808	16	4.9	16	82	7	83	52	19	0	28	1.46
32835717--32835838	34	3.7	34	79	8	128	49	18	0	31	1.54
32835753--32835956	114	1.8	110	89	4	318	44	15	1	38	1.56
32835720--32835971	114	2.3	110	82	5	314	45	16	1	36	1.56
32836005--32836030	12	2.2	12	100	0	52	50	15	0	34	1.45
32838293--32838606	42	7.4	43	83	5	145	24	20	22	32	1.98
32838362--32838606	42	5.8	42	90	1	355	24	22	21	32	1.98
32838362--32838606	85	2.9	85	91	0	393	24	22	21	32	1.98
32841452--32841611	10	16.2	10	68	18	68	63	6	3	27	1.34
32841452--32841620	9	17.3	9	71	14	70	63	5	2	27	1.32
32841455--32841620	19	8.6	19	65	22	53	63	6	3	27	1.32
32841511--32841620	57	1.9	58	83	5	143	64	6	2	26	1.31
32841511--32841620	29	3.9	28	73	3	85	64	6	2	26	1.31
32846709--32846798	44	2.0	44	91	0	144	42	10	22	25	1.84
32846822--32847068	50	4.9	50	85	2	307	26	20	29	23	1.99
32852638--32852727	44	2.0	44	91	0	144	43	11	22	23	1.85
32852751--32852997	50	4.9	50	82	3	282	26	19	29	23	1.98
32856583--32856632	20	2.3	23	83	16	70	44	0	0	56	0.99
32856812--32856861	25	2.0	24	85	14	66	42	10	12	36	1.76
32860032--32860099	33	2.1	33	81	10	77	39	16	19	25	1.91
32860686--32860717	15	2.1	15	94	0	55	15	6	9	68	1.36
32862549--32862680	62	2.1	61	83	8	160	41	4	5	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32863621--32863645	12	2.1	12	100	0	50	76	0	8	16	1.02
32864496--32864583	25	3.1	30	79	15	98	42	6	23	27	1.79
32869156--32869242	25	3.1	28	81	15	108	41	6	25	26	1.80
32869153--32869232	25	2.9	27	83	12	110	41	7	25	26	1.81
32870951--32870982	17	1.9	16	93	6	55	12	0	34	53	1.39
32871948--32871976	15	1.9	15	100	0	58	20	24	13	41	1.89
32890048--32890097	24	2.1	24	96	0	91	36	6	4	54	1.44
32897524--32897586	17	3.8	17	76	14	60	65	9	1	23	1.31
32899701--32899759	30	2.0	30	83	6	75	45	13	6	33	1.70
32900669--32900701	16	2.0	17	88	5	50	51	18	3	27	1.60
32902117--32902227	42	2.6	43	77	4	118	30	24	19	25	1.98
32908507--32908539	16	2.0	17	94	5	59	54	18	0	27	1.44
32910059--32910168	42	2.6	43	76	7	98	33	26	16	23	1.95
32914242--32914283	11	3.8	11	90	0	57	26	47	4	21	1.70
32937041--32937108	21	3.2	21	72	12	68	14	17	19	48	1.81
32937102--32937163	21	3.0	21	73	0	61	17	22	19	40	1.91
32937036--32937171	42	3.2	42	82	2	130	16	19	18	44	1.86
32941625--32941658	17	2.0	17	94	0	59	29	17	8	44	1.79
32949309--32949448	27	5.3	27	78	5	90	38	19	20	21	1.93
32949739--32949780	21	2.0	21	81	9	50	7	0	47	45	1.30
32953852--32953890	14	2.8	14	80	0	51	43	20	0	35	1.52
32956765--32956803	18	2.1	19	85	4	53	35	0	12	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32962363--32962394	16	2.0	16	93	0	55	31	0	9	59	1.29
32967790--32967917	27	4.7	27	78	3	96	35	17	27	20	1.95
32971326--32971356	6	5.2	6	100	0	62	67	0	32	0	0.91
32992151--32992428	50	5.6	50	81	1	324	26	21	29	22	1.99
32994000--32994050	23	2.2	23	89	0	75	43	21	7	27	1.80
32998082--32998188	52	2.0	53	85	1	144	25	13	27	34	1.93
32998231--32998365	49	2.7	50	82	3	157	26	15	25	31	1.96
33003740--33003772	18	1.9	18	88	11	52	57	12	0	30	1.35
33003993--33004022	15	2.0	15	100	0	60	33	26	13	26	1.93
33011389--33011667	50	5.5	50	84	3	317	26	20	31	22	1.98
33022083--33022150	29	2.3	29	85	5	93	27	30	13	27	1.94
33025280--33025593	143	2.2	145	92	4	537	30	24	14	30	1.95
33025550--33025628	30	2.7	29	81	15	99	27	30	15	26	1.96
33028473--33028540	29	2.3	29	85	5	93	27	30	13	27	1.94
33028787--33028864	29	2.7	29	84	11	106	28	30	15	25	1.96
33028504--33028809	145	2.1	145	99	0	603	30	24	15	29	1.96
33036727--33036794	29	2.3	29	85	5	93	27	30	13	27	1.94
33037041--33037119	29	2.7	30	82	13	110	29	30	15	25	1.96
33036758--33037063	145	2.1	145	99	0	603	30	24	15	29	1.96
33041981--33042022	22	1.9	22	95	0	75	21	4	28	45	1.72
33042133--33042158	10	2.6	10	100	0	52	53	0	0	46	1.00
33049530--33049878	50	6.6	50	75	10	225	27	20	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33049590--33049711	62	2.0	62	95	0	217	25	22	29	22	1.99
33049535--33049756	112	1.9	116	83	7	292	25	21	28	24	1.99
33053964--33053993	15	2.0	15	93	0	51	30	0	23	46	1.52
33057177--33057220	22	2.0	22	86	0	61	29	18	29	22	1.97
33060524--33060750	25	9.1	25	76	5	190	34	22	18	25	1.96
33060524--33060750	50	4.5	50	82	2	258	34	22	18	25	1.96
33060524--33060750	100	2.3	100	85	1	294	34	22	18	25	1.96
33070500--33070574	37	2.1	35	95	5	132	41	12	16	30	1.84
33075189--33075242	27	2.0	27	82	7	65	44	5	3	46	1.44
33077154--33077411	53	4.8	54	82	4	326	41	20	15	22	1.90
33077144--33077411	80	3.3	81	81	6	321	41	20	15	22	1.89
33077154--33077406	134	1.9	134	87	3	375	41	20	15	22	1.89
33077144--33077411	27	10.0	27	81	4	310	41	20	15	22	1.89
33077574--33077628	26	2.1	26	89	0	83	18	20	27	34	1.95
33080001--33080399	27	14.9	26	81	5	354	41	21	15	20	1.89
33080566--33080646	26	3.1	26	81	0	99	19	22	23	34	1.96
33080756--33080866	28	4.0	28	90	1	170	25	20	22	31	1.98
33080843--33080965	33	3.7	33	92	1	183	26	24	22	26	2.00
33098852--33099157	29	10.6	28	81	5	308	38	12	28	20	1.89
33098841--33099153	146	2.2	145	83	5	375	38	13	27	19	1.89
33098812--33099168	29	12.3	29	78	8	298	37	13	28	21	1.91
33098968--33099157	88	2.2	89	84	4	244	39	12	29	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33105186--33105252	33	2.0	33	97	0	125	41	11	13	32	1.81
33105620--33105673	26	2.1	26	100	0	108	29	22	18	29	1.97
33106254--33106481	29	7.8	29	81	3	233	37	13	28	20	1.91
33116786--33116925	27	5.3	27	82	5	187	41	19	19	20	1.91
33117265--33117369	33	3.3	33	75	11	94	22	25	24	26	2.00
33120433--33120656	40	5.7	40	87	6	296	24	21	28	25	1.99
33152527--33152558	12	2.6	13	85	14	50	43	6	18	31	1.75
33154093--33154214	40	3.1	37	80	12	138	23	27	23	24	2.00
33161968--33162129	40	4.3	40	81	13	159	24	28	21	25	1.99
33169314--33169456	39	3.7	39	90	0	216	31	3	19	45	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196