genome.fa.s25.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  103  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30951546--30951709	81	2.0	81	98	0	319	31	7	12	47	1.70
30954407--30954453	3	15.3	3	78	12	51	4	34	0	61	1.15
30954421--30954455	18	1.9	18	94	0	61	8	28	0	62	1.24
30958488--30958542	28	2.0	26	82	6	65	60	7	10	21	1.55
30966258--30966295	19	2.0	19	85	10	51	34	7	18	39	1.80
30969171--30969332	77	2.1	77	96	0	297	33	29	13	23	1.93
30981810--30981847	4	9.5	4	83	11	51	50	23	2	23	1.62
30983002--30983113	50	2.4	48	85	10	151	48	8	16	27	1.74
30988400--30988559	27	5.9	27	83	10	202	42	15	17	24	1.88
30988715--30988785	26	2.7	26	80	0	88	16	18	22	42	1.89
30988902--30988959	28	2.1	28	93	3	100	20	22	25	31	1.98
30994445--30994648	27	7.6	26	85	5	230	29	28	14	26	1.95
30998353--30998385	17	1.9	17	93	0	57	57	9	12	21	1.62
30998794--30998831	15	2.5	15	91	0	58	21	31	7	39	1.82
31000555--31000590	9	3.9	9	88	3	54	83	0	2	13	0.76
31000556--31000602	5	9.6	5	77	13	53	78	2	2	17	0.94
31000556--31000602	9	4.8	10	84	5	53	78	2	2	17	0.94
31006146--31006179	17	2.1	16	88	5	50	76	14	0	8	1.01
31010844--31010891	24	1.9	25	83	8	62	72	4	14	8	1.23
31013793--31013823	16	1.9	16	93	0	53	48	0	9	41	1.36
31015239--31015356	42	2.8	42	96	0	209	25	17	24	32	1.97
31019443--31019486	18	2.5	17	78	10	52	40	15	2	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31028242--31028277	18	2.1	17	89	5	54	0	33	0	66	0.92
31031511--31031574	29	2.2	29	85	0	83	42	1	25	31	1.64
31031613--31031646	18	1.9	17	94	5	59	29	5	5	58	1.45
31043138--31043172	10	3.6	10	92	3	54	37	0	40	22	1.55
31046085--31046119	17	2.1	17	88	0	52	22	2	5	68	1.24
31046083--31046123	13	3.0	14	75	17	50	24	4	4	65	1.32
31050981--31051021	18	2.3	18	87	8	57	80	0	17	2	0.82
31053217--31053849	88	7.2	88	82	1	694	27	24	25	23	2.00
31053219--31053811	176	3.4	176	89	0	907	26	25	25	23	2.00
31053883--31054006	44	2.8	45	83	3	153	29	22	26	21	1.99
31053835--31054353	217	2.4	217	93	0	885	30	19	24	26	1.98
31054104--31054223	44	2.7	45	84	3	136	30	24	23	21	1.99
31054193--31054481	129	2.2	129	82	0	364	30	20	21	28	1.98
31054016--31054650	346	1.8	345	82	4	814	31	20	22	26	1.98
31054536--31054639	44	2.4	44	80	3	102	30	21	20	27	1.98
31056747--31056784	13	2.8	14	80	19	53	21	5	7	65	1.38
31058273--31058474	106	2.0	99	88	6	296	31	26	15	26	1.96
31066957--31067031	37	2.0	37	92	0	123	34	29	18	17	1.94
31073014--31073076	2	31.5	2	100	0	126	49	0	50	0	1.00
31081916--31081976	26	2.3	26	86	5	79	47	22	3	26	1.67
31092056--31092105	26	1.9	26	84	8	66	34	14	10	42	1.78
31099767--31100420	351	1.9	351	94	0	1164	31	25	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31102714--31103048	27	12.4	27	78	5	277	46	19	17	17	1.85
31102714--31103048	54	6.2	53	78	5	318	46	19	17	17	1.85
31102714--31103048	81	4.1	81	79	9	346	46	19	17	17	1.85
31103244--31103294	26	2.0	26	88	0	75	17	17	21	43	1.88
31103406--31103480	28	2.7	28	87	0	105	28	20	22	29	1.98
31104287--31104321	18	2.0	18	94	5	63	45	11	25	17	1.81
31111206--31111643	51	8.7	51	76	7	351	29	26	15	27	1.96
31111203--31111643	102	4.4	101	81	5	439	29	26	16	27	1.96
31117514--31117538	13	1.9	13	100	0	50	0	12	8	80	0.92
31118380--31118659	27	10.4	27	80	4	298	43	20	18	17	1.88
31118380--31118659	54	5.2	54	85	1	357	43	20	18	17	1.88
31118855--31118931	26	3.0	26	84	7	102	18	20	19	41	1.90
31119032--31119125	28	3.4	28	86	2	127	25	21	23	29	1.99
31120491--31120537	5	9.4	5	95	0	85	40	21	17	21	1.91
31120907--31120948	22	1.9	22	90	0	66	61	28	0	9	1.27
31122999--31123080	39	2.1	40	90	2	130	35	13	14	36	1.86
31128311--31128361	3	17.0	3	100	0	102	66	0	33	0	0.92
31134101--31134138	6	6.3	6	96	0	58	34	10	31	23	1.89
31135230--31135256	6	4.5	6	100	0	54	48	0	37	14	1.45
31143582--31143636	27	2.0	27	96	0	101	45	20	14	20	1.85
31143877--31143922	19	2.3	20	96	3	85	23	10	17	47	1.79
31146355--31146393	21	1.9	20	94	5	69	25	12	5	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31160334--31160382	20	2.5	20	86	6	64	24	24	0	51	1.49
31161046--31161341	40	7.4	40	86	1	333	42	27	15	15	1.87
31161056--31161341	120	2.4	120	85	1	367	41	26	15	16	1.87
31165198--31165328	25	5.3	25	72	9	81	19	26	21	32	1.97
31165184--31165326	75	1.9	73	82	2	178	20	25	21	32	1.97
31173084--31173142	26	2.3	26	84	0	82	16	20	25	37	1.93
31173082--31173222	25	5.6	25	68	12	76	20	24	22	31	1.98
31181342--31181384	17	2.5	17	76	3	50	46	37	4	11	1.61
31183516--31183763	50	4.9	50	82	6	250	22	28	21	27	1.99
31194057--31194103	10	4.6	10	77	12	51	36	2	2	59	1.21
31205041--31205089	24	2.0	24	96	0	89	65	8	6	20	1.41
31219774--31219816	21	2.0	21	82	8	52	23	16	16	44	1.86
31223231--31223264	16	2.1	16	100	0	68	35	0	17	47	1.48
31225651--31225710	25	2.5	24	81	10	68	63	3	0	33	1.11
31225648--31225737	23	3.8	24	75	10	69	63	2	0	34	1.07
31232398--31232443	19	2.4	19	82	7	58	47	4	0	47	1.21
31232546--31232581	18	2.0	18	94	0	63	38	25	0	36	1.56
31232578--31232617	13	3.1	13	96	0	71	40	20	7	32	1.80
31232565--31232615	26	2.0	25	85	14	68	39	19	5	35	1.76
31239381--31239425	19	2.3	20	82	17	51	24	28	0	46	1.53
31239413--31239449	18	2.0	19	89	5	58	21	40	0	37	1.54
31248231--31248264	17	2.0	17	100	0	68	23	0	5	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31249549--31249599	12	3.9	13	75	15	52	37	0	37	25	1.56
31250651--31250983	27	12.4	27	81	7	342	42	18	16	21	1.88
31250661--31250981	81	4.0	80	83	4	394	42	19	16	21	1.89
31251215--31251295	26	3.1	26	80	3	101	19	22	24	33	1.97
31258868--31259496	210	3.0	210	90	1	983	37	8	17	37	1.81
31260301--31260929	210	3.0	210	89	0	972	36	9	16	37	1.80
31261735--31262562	210	4.0	210	91	2	1298	36	9	16	38	1.80
31261735--31262562	411	2.0	414	90	2	1295	36	9	16	38	1.80
31271001--31271089	25	3.6	25	80	3	90	28	24	20	26	1.99
31294300--31294358	11	5.3	11	75	17	50	15	3	5	76	1.10
31294313--31294370	6	8.3	7	80	14	50	20	1	3	74	1.06
31294346--31294471	3	42.7	3	68	9	62	29	5	3	61	1.37
31294502--31294545	21	2.1	21	95	0	79	22	11	4	61	1.48
31304102--31304151	22	2.2	23	82	13	68	70	6	6	18	1.29
31304994--31305077	25	3.4	25	91	1	125	39	2	0	58	1.11
31309463--31309598	67	2.0	67	84	0	173	27	24	20	27	1.99
31311674--31311772	42	2.4	42	81	1	128	20	31	15	33	1.93
31320769--31320825	30	1.9	30	96	0	105	31	14	22	31	1.93
31322643--31322712	27	2.6	26	79	4	77	25	25	20	28	1.99
31327999--31328135	50	2.7	50	83	0	175	27	22	29	20	1.99
31334678--31334719	21	2.0	21	81	9	50	7	16	42	33	1.75
31337738--31337779	3	14.0	3	100	0	84	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31342685--31342730	2	23.0	2	95	0	83	47	0	0	52	1.00
31342887--31342953	20	3.2	23	70	23	67	28	0	1	70	0.96
31342883--31342954	19	3.7	19	78	15	76	29	0	1	69	0.97
31342905--31342973	35	2.0	35	82	5	86	26	0	2	71	1.00
31343157--31343182	4	6.5	4	100	0	52	23	0	26	50	1.50
31344001--31344056	28	2.0	28	100	0	112	32	10	17	39	1.84
31350192--31350264	34	2.1	34	80	9	78	36	5	2	54	1.38
31350436--31350460	4	6.2	4	100	0	50	76	0	24	0	0.80
31355585--31355636	25	2.1	25	92	0	86	28	15	13	42	1.85
31357832--31358047	85	2.6	85	96	0	389	32	25	19	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196