genome.fa.s25.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  167  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48988836--48988914	39	2.0	39	95	0	140	32	31	5	30	1.79
48989677--48989722	21	2.2	21	84	7	58	17	4	43	34	1.69
48998485--48998544	25	2.5	24	78	8	68	20	23	23	33	1.97
49001677--49001719	3	15.0	3	85	9	63	69	0	30	0	0.88
49004310--49004444	39	3.5	39	83	1	182	15	20	31	32	1.94
49006865--49006909	21	2.0	23	83	8	58	35	4	22	37	1.74
49007096--49007137	19	2.2	20	95	4	77	30	9	9	50	1.67
49010525--49010574	25	2.0	26	84	4	66	42	0	42	16	1.47
49010625--49010684	30	2.0	30	83	3	75	41	0	38	20	1.52
49011672--49011812	25	5.8	24	73	13	101	18	26	21	34	1.96
49011673--49011815	49	2.9	50	78	16	131	18	27	21	32	1.96
49011698--49011827	25	5.3	25	76	14	101	18	26	21	33	1.96
49011782--49011848	25	2.6	25	85	2	80	22	26	19	31	1.98
49016317--49016714	125	3.2	125	82	4	532	28	15	23	32	1.95
49019818--49019915	25	4.2	24	68	13	87	50	10	1	38	1.43
49019788--49019918	70	1.9	70	95	0	235	50	11	0	37	1.44
49020348--49020387	18	2.2	18	95	0	71	40	7	30	22	1.81
49022185--49022209	10	2.5	10	100	0	50	56	0	0	44	0.99
49022208--49022305	51	1.9	51	85	4	135	45	3	22	28	1.67
49022288--49022320	11	2.8	12	86	9	50	42	3	30	24	1.70
49025691--49025715	13	1.9	13	100	0	50	80	0	0	20	0.72
49026618--49026643	3	8.7	3	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49043593--49043672	41	2.0	41	92	0	133	28	22	18	30	1.98
49043930--49043984	12	4.3	12	78	13	65	45	9	3	41	1.53
49048203--49048261	23	2.6	23	91	0	91	20	27	20	32	1.97
49056792--49056903	52	2.1	53	95	3	199	31	22	8	37	1.85
49058754--49058818	25	2.6	25	78	4	69	33	18	24	23	1.96
49059133--49059175	16	2.8	15	79	6	50	44	11	0	44	1.40
49064403--49064434	2	16.5	2	93	6	57	50	0	0	50	1.00
49071599--49071684	36	2.5	35	94	5	156	32	13	20	32	1.92
49071727--49071842	40	2.9	41	80	11	132	25	19	27	27	1.99
49072499--49072541	15	2.9	15	79	6	52	18	2	32	46	1.62
49072431--49072604	7	24.4	7	69	14	52	22	1	29	45	1.63
49079547--49079688	48	3.0	48	93	2	232	21	12	26	39	1.89
49080788--49080824	16	2.3	16	86	13	58	40	0	0	59	0.97
49080844--49080878	16	2.2	16	89	0	52	57	0	0	42	0.99
49080839--49080885	13	3.2	15	73	14	53	51	0	0	48	1.00
49085921--49085967	12	3.8	12	83	8	51	53	8	4	34	1.51
49086595--49086633	12	3.2	12	82	13	53	53	0	10	35	1.35
49088156--49088245	44	2.0	44	84	2	117	27	25	15	31	1.96
49088441--49088924	45	10.9	44	71	10	315	26	24	18	30	1.98
49088459--49088924	89	5.2	88	88	4	580	25	24	18	30	1.98
49088441--49088852	44	9.3	43	69	13	216	27	24	18	29	1.98
49090285--49090411	49	2.5	51	83	5	143	13	28	16	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49090303--49090415	51	2.3	49	87	3	154	12	28	15	44	1.82
49090322--49090427	51	2.1	50	85	3	142	11	25	16	47	1.79
49093113--49093152	20	2.0	20	90	0	62	32	10	25	32	1.89
49097044--49097077	2	17.0	2	100	0	68	50	0	0	50	1.00
49097253--49097291	12	3.2	12	82	13	53	53	0	10	35	1.35
49097806--49097833	11	2.5	11	100	0	56	10	39	42	7	1.67
49099758--49099797	14	2.9	14	85	7	55	65	2	0	32	1.06
49100647--49100841	98	2.0	98	91	0	318	38	22	9	29	1.86
49102276--49102318	23	1.9	23	90	4	70	44	13	4	37	1.65
49104245--49104273	2	14.5	2	100	0	58	0	51	0	48	1.00
49114821--49115012	19	9.4	20	67	22	78	61	0	3	35	1.12
49114815--49115010	41	4.7	40	81	11	200	60	0	3	36	1.13
49114815--49114877	10	6.1	10	77	14	65	55	0	1	42	1.09
49114839--49114960	12	9.3	13	72	19	69	59	0	3	37	1.14
49114836--49114960	54	2.4	54	84	9	152	58	0	3	38	1.14
49114815--49115001	94	2.0	96	82	4	236	59	0	3	37	1.14
49120649--49120674	2	13.0	2	100	0	52	50	0	0	50	1.00
49123256--49123319	25	2.4	27	82	12	80	20	3	23	53	1.60
49126603--49126646	23	1.9	22	82	17	54	36	25	0	38	1.56
49126742--49126881	51	2.7	51	80	4	165	32	27	16	24	1.96
49131722--49131747	3	8.7	3	100	0	52	0	30	0	69	0.89
49134021--49134109	11	8.9	11	70	22	63	41	1	0	57	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49134013--49134127	39	3.2	38	72	24	122	39	1	0	59	1.08
49134053--49134131	29	2.5	32	86	8	110	43	1	0	55	1.07
49134069--49134106	18	2.1	18	95	5	67	47	0	0	52	1.00
49134097--49134152	22	2.5	21	80	11	58	41	1	3	53	1.29
49134855--49134898	22	2.0	23	86	4	63	56	0	0	43	0.99
49134856--49134886	15	2.0	16	93	6	55	61	0	0	38	0.96
49139996--49140042	24	2.0	24	84	16	62	31	0	17	51	1.46
49140020--49140068	17	3.3	15	75	25	50	34	0	16	48	1.46
49140795--49140831	18	2.1	18	100	0	74	37	0	10	51	1.37
49149974--49150027	27	2.0	28	82	10	67	59	5	0	35	1.21
49150839--49150871	13	2.3	15	90	10	52	54	6	3	36	1.41
49153315--49153531	118	1.8	118	88	2	328	35	3	11	48	1.57
49158451--49158572	19	6.3	19	66	12	59	36	0	0	62	1.07
49158481--49158542	30	2.2	28	88	8	90	37	0	0	62	0.95
49160663--49160706	3	15.0	3	84	13	56	27	0	2	70	0.99
49161248--49161278	16	1.9	16	93	0	53	35	6	3	54	1.42
49162775--49162842	21	3.3	21	83	4	77	47	17	17	17	1.84
49162792--49162831	21	1.9	21	100	0	80	40	15	20	25	1.90
49164035--49164059	13	1.9	13	100	0	50	36	8	24	32	1.84
49166601--49166640	21	1.9	21	94	0	71	55	10	12	22	1.67
49166557--49166689	70	1.9	67	86	4	185	44	11	11	33	1.76
49168882--49168946	30	2.2	30	91	0	103	35	4	0	60	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49168890--49169052	41	4.0	40	84	8	204	37	3	0	59	1.13
49168970--49169052	31	2.7	30	85	9	98	38	1	0	60	1.05
49168889--49169050	81	2.0	82	88	8	242	37	3	0	59	1.13
49170510--49170671	41	4.0	41	91	1	236	33	29	18	19	1.95
49171323--49171357	17	2.1	17	89	5	54	31	14	5	48	1.67
49176287--49176340	15	3.4	15	75	12	54	9	27	9	53	1.63
49186563--49186600	15	2.5	15	100	0	76	39	0	13	47	1.42
49187414--49187472	31	1.9	31	92	0	100	40	13	15	30	1.86
49187694--49187742	24	2.0	24	100	0	98	59	0	28	12	1.34
49196989--49197081	39	2.5	37	80	7	98	27	29	22	20	1.98
49197437--49197484	3	16.0	3	82	0	60	58	6	0	35	1.23
49197438--49197486	18	2.7	18	93	0	80	55	8	0	36	1.30
49197437--49197484	12	4.0	12	91	0	69	58	6	0	35	1.23
49198191--49198230	20	2.0	20	85	9	55	2	15	5	77	1.04
49198361--49198428	31	2.3	28	78	9	73	41	2	1	54	1.24
49198407--49198445	21	1.9	20	84	5	51	46	2	0	51	1.14
49203346--49203388	21	2.0	21	82	8	52	23	20	4	51	1.66
49204434--49204526	39	2.5	37	80	7	98	27	29	22	20	1.98
49204880--49204927	3	16.0	3	82	0	60	58	6	0	35	1.23
49204881--49204929	18	2.7	18	93	0	80	55	8	0	36	1.30
49204880--49204927	12	4.0	12	91	0	69	58	6	0	35	1.23
49205633--49205672	20	2.0	20	85	9	55	2	15	5	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49225266--49225305	16	2.6	16	84	4	55	40	0	17	42	1.49
49227658--49228013	102	3.4	103	92	2	590	19	21	28	30	1.97
49230589--49230629	22	1.9	22	85	5	57	63	0	0	36	0.95
49231240--49231264	13	1.9	13	100	0	50	8	56	0	36	1.29
49232893--49232917	13	1.9	13	100	0	50	8	0	24	68	1.16
49234573--49234734	41	4.0	41	86	1	218	29	19	27	23	1.98
49234570--49234769	41	4.9	41	83	3	215	31	19	26	23	1.98
49236635--49236701	34	1.9	35	87	3	100	46	11	8	32	1.72
49238339--49238467	4	32.0	4	72	16	90	69	0	29	0	0.94
49238382--49238485	20	5.4	19	71	17	72	69	0	29	0	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196