genome.fa.s25.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  57  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15924954--15925025	19	3.8	18	78	5	63	27	2	2	66	1.19
15924962--15925025	19	3.4	19	78	6	67	29	3	1	65	1.17
15925092--15925230	8	16.1	8	71	15	50	30	1	2	65	1.13
15925097--15925163	27	2.4	27	87	7	91	32	1	4	61	1.25
15925114--15925189	18	4.3	18	71	21	63	34	0	2	63	1.09
15925092--15925159	35	1.9	35	82	8	84	35	1	2	60	1.21
15926287--15926373	42	2.1	42	97	0	165	49	8	11	31	1.68
15937656--15937746	40	2.3	40	96	0	164	37	5	35	21	1.77
15943000--15943060	30	2.0	30	87	0	86	45	13	13	27	1.80
15953300--15953396	25	3.8	26	86	5	126	24	20	27	26	1.99
15954839--15954954	54	2.1	54	82	0	133	24	23	31	20	1.98
15957133--15957175	22	1.9	22	86	13	61	32	13	9	44	1.76
15961211--15961433	40	5.6	39	86	6	256	24	27	22	24	2.00
15961213--15961433	117	1.9	119	84	7	299	24	27	23	24	2.00
15965726--15965893	39	4.4	37	83	8	185	26	27	21	25	1.99
15965726--15965945	75	2.8	76	82	11	241	25	27	22	24	2.00
15970095--15970317	77	2.8	79	80	10	242	24	21	27	25	1.99
15970095--15970317	40	5.7	40	83	7	253	24	21	27	25	1.99
15983436--15983616	77	2.3	79	82	6	217	24	22	27	25	2.00
15983435--15983616	40	4.7	40	81	8	214	24	21	27	25	2.00
15983482--15983649	79	2.2	77	81	7	198	27	19	26	26	1.99
15988842--15989063	40	5.7	38	86	6	268	24	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15996825--15997046	40	5.6	40	85	9	262	24	22	27	24	2.00
15996825--15997046	79	2.8	79	84	10	258	24	22	27	24	2.00
15996876--15997079	79	2.6	79	83	5	218	25	22	27	24	2.00
16005722--16005854	41	3.2	41	94	0	203	30	20	19	30	1.97
16005971--16006101	61	2.1	61	81	2	156	40	16	8	35	1.78
16006053--16006195	65	2.2	65	82	5	164	41	15	9	33	1.78
16013702--16013837	41	3.3	41	82	2	157	29	16	20	33	1.94
16019547--16019621	33	2.3	33	83	0	87	49	17	14	18	1.80
16020920--16020952	13	2.7	13	90	9	52	36	12	15	36	1.84
16022152--16022386	50	4.7	50	90	0	344	29	16	25	28	1.97
16023540--16023575	18	2.0	18	88	0	54	33	0	22	44	1.53
16029402--16029434	13	2.7	13	90	9	52	36	12	15	36	1.84
16034038--16034080	19	2.2	20	84	12	63	32	18	0	48	1.48
16034160--16034247	45	2.0	45	86	0	122	34	20	18	27	1.96
16034254--16034334	26	3.2	26	64	22	62	30	29	17	22	1.96
16034258--16034435	51	3.5	49	79	5	194	29	28	18	24	1.98
16034255--16034474	101	2.2	101	83	4	273	30	28	16	24	1.97
16037861--16038042	51	3.6	50	83	5	231	28	14	26	30	1.95
16037857--16038049	101	1.9	102	88	1	289	29	15	25	29	1.96
16037864--16038081	101	2.1	102	81	2	251	30	13	26	29	1.94
16039821--16039871	26	1.9	27	92	4	86	25	21	21	31	1.98
16041964--16042178	77	2.8	77	80	4	227	32	11	9	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16050070--16050120	20	2.5	20	81	6	59	29	11	15	43	1.82
16051474--16051589	58	2.0	58	98	0	223	46	11	13	28	1.78
16055781--16055840	23	2.6	23	76	12	61	31	1	16	50	1.55
16056311--16056363	26	2.0	26	85	0	70	33	0	9	56	1.32
16067392--16067485	45	2.1	45	91	0	152	31	24	19	24	1.98
16067487--16067568	26	3.2	26	65	22	73	31	29	15	23	1.95
16067491--16067677	51	3.7	50	78	9	209	30	27	17	25	1.97
16067489--16067673	101	1.8	101	88	3	282	30	27	17	24	1.97
16067488--16067707	101	2.2	101	82	4	264	30	27	15	25	1.96
16071122--16071307	51	3.7	50	82	6	223	29	15	25	29	1.96
16071123--16071346	101	2.2	102	80	2	254	31	13	25	29	1.94
16073089--16073141	26	2.0	27	88	3	81	24	20	22	32	1.98
16076004--16076185	77	2.4	77	81	7	217	33	12	10	43	1.77
16084047--16084097	20	2.5	20	81	6	59	29	11	15	43	1.82
16085451--16085566	58	2.0	58	98	0	223	46	11	13	28	1.78
16089757--16089816	23	2.6	23	76	12	61	31	1	16	50	1.55
16090290--16090342	26	2.0	26	85	0	70	33	0	9	56	1.32
16102071--16102486	89	4.4	89	69	14	246	28	21	23	25	1.99
16102218--16102433	44	4.7	44	71	12	171	26	22	24	26	2.00
16102073--16102574	143	3.5	143	91	0	799	28	21	22	27	1.99
16103800--16103831	12	2.8	12	95	4	57	31	6	0	62	1.20
16103785--16103843	27	2.3	26	85	8	77	32	5	0	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16104991--16105034	17	2.5	18	82	14	56	45	2	0	52	1.13
16106703--16106771	16	4.2	16	96	3	129	26	0	36	37	1.57
16106703--16106771	33	2.1	32	97	2	129	26	0	36	37	1.57
16107007--16107041	18	2.0	17	88	5	52	54	0	0	45	0.99
16107247--16107281	18	2.0	17	88	5	52	54	0	0	45	0.99
16106990--16108446	119	12.2	120	98	0	2764	47	6	2	43	1.39
16107606--16107640	18	2.0	17	88	5	52	54	0	0	45	0.99
16106990--16108446	359	4.1	358	99	0	2790	47	6	2	43	1.39
16113403--16113493	46	2.0	46	86	2	130	35	1	16	47	1.54
16113508--16113556	25	1.9	26	87	4	73	38	6	4	51	1.46
16113800--16113845	23	2.0	23	100	0	92	39	17	21	21	1.93
16114993--16115049	23	2.5	22	80	13	62	64	10	1	22	1.34
16117754--16117942	50	3.7	50	80	12	213	23	29	20	26	1.99
16117754--16117940	100	1.8	103	85	9	265	23	29	20	26	1.99
16125305--16125382	26	3.0	26	98	0	147	21	15	20	42	1.89
16131319--16131414	49	2.0	49	97	0	183	21	15	26	36	1.93
16141009--16141039	16	1.9	16	93	0	53	51	0	0	48	1.00
16141066--16141102	16	2.3	17	81	13	51	54	0	5	40	1.24
16144814--16144892	38	2.1	38	97	0	149	25	8	10	55	1.62
16148824--16148853	15	2.0	15	100	0	60	33	0	6	60	1.23
16149124--16149165	18	2.3	18	88	8	59	21	0	4	73	1.01
16149131--16149194	32	2.1	30	82	8	76	18	4	3	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16164091--16164241	28	5.4	28	92	1	223	25	11	28	33	1.92
16182837--16182880	22	2.0	22	100	0	88	18	27	13	40	1.88
16185025--16185066	17	2.4	18	80	8	50	19	9	16	54	1.69
16189959--16190000	21	2.0	21	86	9	59	42	7	0	50	1.30
16192595--16192656	30	2.1	30	90	0	97	48	3	1	46	1.28
16198710--16199181	157	3.0	156	91	1	739	36	5	20	37	1.77
16202830--16203018	95	2.0	95	91	0	306	30	17	17	34	1.93
16213194--16213225	16	2.0	16	93	0	55	25	15	0	59	1.36
16213355--16213443	46	2.0	44	84	8	117	32	24	17	24	1.97
16213453--16213643	51	3.8	51	80	6	217	31	27	16	24	1.96
16213451--16213635	101	1.8	102	84	3	257	31	27	16	24	1.96
16218102--16218137	18	2.0	18	89	10	56	27	25	2	44	1.68
16228965--16229240	93	3.0	93	96	0	489	32	20	19	27	1.97
16230361--16230404	23	1.9	23	90	0	70	27	20	25	27	1.99
16232676--16232717	12	3.5	12	78	12	50	73	4	14	7	1.21
16232678--16232733	24	2.3	24	87	6	78	75	3	12	8	1.17
16238371--16238409	19	2.0	20	90	5	62	41	0	5	53	1.23
16242082--16242139	20	2.8	20	84	5	71	39	20	25	13	1.90
16245628--16245684	27	2.1	27	83	6	71	21	3	15	59	1.51
16250623--16251712	363	3.0	363	99	0	2171	31	15	17	36	1.91
16252595--16252662	30	2.3	30	82	10	77	41	8	4	45	1.55
16252864--16252889	12	2.2	12	100	0	52	84	0	0	15	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16258233--16258331	42	2.4	42	84	0	126	30	24	22	23	1.99
16263674--16263711	16	2.4	16	95	4	69	31	5	0	63	1.17
16269641--16269755	48	2.4	48	82	10	144	49	1	6	41	1.40
16270964--16271009	18	2.5	19	76	20	53	36	6	13	43	1.69
16271084--16271120	17	2.2	17	100	0	74	18	10	16	54	1.71
16271719--16271744	6	4.3	6	100	0	52	46	0	0	53	1.00
16273462--16273518	19	3.1	19	70	12	55	61	3	22	12	1.46
16295980--16296210	40	5.8	40	84	0	255	21	28	16	33	1.95
16295982--16296233	80	3.1	80	85	0	306	23	28	15	32	1.95
16304406--16304556	40	3.8	38	80	6	167	20	27	18	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196