genome.fa.s25.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  125  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37591812--37591938	60	2.1	60	86	0	173	36	8	18	37	1.81
37600678--37600735	22	2.6	22	84	7	73	43	17	3	36	1.66
37600691--37600788	19	4.8	19	83	9	115	39	16	7	36	1.76
37600725--37600787	21	3.1	21	88	9	103	39	14	7	38	1.75
37602456--37602492	13	2.8	13	95	0	65	45	45	0	8	1.32
37610084--37610113	3	10.0	3	100	0	60	0	33	0	66	0.92
37614572--37614639	31	2.2	30	77	10	75	38	14	11	35	1.83
37617562--37617595	2	17.0	2	100	0	68	0	0	50	50	1.00
37624674--37624729	22	2.6	22	83	10	71	37	0	1	60	1.07
37624721--37624774	22	2.4	21	80	17	56	35	1	5	57	1.33
37626460--37626504	9	5.0	9	84	10	56	60	0	2	37	1.09
37629504--37629547	12	3.4	13	81	9	54	77	0	0	22	0.77
37629507--37629541	12	2.9	12	95	0	61	82	0	0	17	0.66
37629512--37629548	13	2.8	14	84	8	51	78	0	0	21	0.75
37631152--37631185	10	3.4	10	95	0	59	76	0	0	23	0.79
37639321--37639378	19	3.2	19	71	20	52	62	5	27	5	1.38
37640270--37640513	82	3.0	82	87	0	344	47	9	11	31	1.71
37642021--37642199	64	2.8	64	86	1	234	22	18	21	37	1.94
37642188--37642239	25	2.1	24	82	3	59	19	25	19	36	1.95
37649246--37649294	25	2.0	25	95	0	89	28	46	8	16	1.75
37650802--37650900	23	4.3	23	90	0	153	29	26	21	23	1.99
37654468--37654635	24	6.8	24	70	8	79	32	22	26	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37655292--37655331	20	2.0	20	85	0	53	37	15	2	45	1.59
37659741--37659809	28	2.3	31	85	7	99	43	4	2	49	1.37
37661135--37661160	3	8.7	3	100	0	52	69	0	30	0	0.89
37661816--37661882	31	2.2	31	83	0	80	43	5	4	46	1.48
37669273--37669372	29	3.4	29	76	14	98	26	19	12	43	1.85
37669243--37669354	31	3.7	30	76	10	111	22	18	11	47	1.81
37669910--37669960	16	3.1	16	75	16	50	43	0	1	54	1.11
37669913--37669968	28	2.0	27	86	3	76	44	0	3	51	1.18
37669970--37670007	17	2.2	18	85	4	51	31	0	13	55	1.38
37670026--37670088	27	2.4	27	80	15	69	33	0	4	61	1.17
37670286--37670348	32	2.0	32	84	6	83	46	6	12	34	1.68
37671937--37671986	25	2.0	25	100	0	100	44	8	20	28	1.79
37681137--37681192	23	2.4	24	88	8	80	55	0	0	44	0.99
37681250--37681302	21	2.7	20	83	13	65	37	5	3	52	1.43
37686232--37686360	25	5.2	25	71	16	81	33	21	23	21	1.97
37686273--37686320	23	2.1	23	88	0	69	31	22	29	16	1.96
37686302--37686372	26	2.8	26	80	2	81	35	22	23	18	1.96
37694218--37694265	19	2.9	16	75	19	53	58	4	16	20	1.55
37694212--37694266	16	3.2	17	76	16	60	56	3	20	20	1.57
37696498--37696538	20	2.0	20	100	0	82	14	14	4	65	1.42
37697627--37697676	13	3.9	13	82	15	68	16	18	4	62	1.48
37697622--37697675	12	4.3	12	82	13	56	18	18	3	59	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37700639--37700673	9	3.9	9	92	0	61	37	20	31	11	1.88
37702013--37702077	32	2.0	32	100	0	130	33	18	15	32	1.92
37710339--37710398	24	2.4	25	81	8	70	21	26	21	30	1.99
37710518--37710652	24	5.5	25	78	10	102	21	27	21	29	1.99
37710518--37710631	25	4.7	24	80	11	101	22	27	20	29	1.98
37710518--37710631	49	2.3	49	78	14	119	22	27	20	29	1.98
37712846--37712975	43	3.0	43	80	12	167	22	17	28	31	1.97
37720364--37720420	23	2.6	23	80	5	73	45	0	1	52	1.11
37720466--37720530	27	2.4	27	84	0	85	27	21	32	18	1.97
37720824--37720861	19	2.0	20	89	5	60	34	0	13	52	1.40
37720797--37720943	80	1.9	79	84	8	203	33	1	12	52	1.48
37721191--37721227	16	2.4	15	90	4	56	37	2	0	59	1.12
37724252--37724320	27	2.5	28	76	6	70	21	34	17	26	1.95
37724273--37724329	27	2.1	27	90	0	87	21	33	24	21	1.97
37736454--37736549	31	3.1	30	77	3	93	22	17	22	36	1.95
37736478--37736549	30	2.4	30	83	2	90	25	19	22	33	1.97
37739479--37739517	21	1.9	20	84	5	51	61	5	12	20	1.50
37739821--37739855	17	2.0	18	88	5	54	60	5	0	34	1.21
37739820--37739857	9	4.2	9	86	10	51	60	5	0	34	1.19
37742431--37742458	8	3.5	8	100	0	56	67	10	0	21	1.20
37743668--37743692	5	5.0	5	100	0	50	80	0	20	0	0.72
37746452--37746481	11	2.6	11	94	5	51	36	3	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37746463--37746519	26	2.1	27	87	3	80	24	1	5	68	1.20
37747145--37747830	126	5.5	125	87	2	896	30	16	23	30	1.96
37751011--37751603	21	27.7	21	81	6	654	24	0	31	43	1.59
37751011--37751603	43	13.9	43	83	4	677	24	0	31	43	1.59
37751011--37751603	64	9.2	63	81	6	597	24	0	31	43	1.59
37752157--37752198	18	2.3	18	83	0	57	47	7	28	16	1.73
37752981--37753018	20	1.9	20	89	10	60	55	5	2	36	1.37
37754016--37754092	11	6.9	11	70	24	63	42	1	28	27	1.63
37753957--37754054	51	1.9	51	83	4	126	43	3	24	28	1.69
37754016--37754090	22	3.3	23	80	15	79	42	1	28	28	1.64
37754016--37754091	33	2.3	34	81	9	93	42	1	28	27	1.64
37755103--37755173	27	2.6	27	77	0	79	26	32	30	9	1.89
37755579--37755665	40	2.3	38	84	11	108	32	3	10	54	1.51
37755457--37755665	76	2.7	77	76	10	212	33	4	11	50	1.60
37758544--37758575	16	1.9	17	93	6	57	18	0	37	43	1.51
37763060--37763115	24	2.2	25	82	17	64	66	3	3	26	1.25
37763102--37763126	10	2.5	10	100	0	50	76	0	8	16	1.02
37766924--37766975	7	7.3	7	76	10	52	0	19	0	80	0.71
37766917--37766978	23	2.7	22	80	11	72	0	22	0	77	0.77
37767015--37767039	13	1.9	13	100	0	50	12	48	16	24	1.79
37767794--37768179	75	5.1	74	87	1	511	34	17	18	30	1.94
37779310--37779336	13	2.1	13	100	0	54	66	14	0	18	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37779854--37779888	17	2.1	17	94	5	63	20	0	0	80	0.72
37779854--37779887	8	4.2	8	89	10	52	20	0	0	79	0.73
37779851--37780419	303	1.9	303	88	1	818	12	19	30	36	1.89
37780632--37780668	15	2.6	14	87	8	56	16	0	2	81	0.81
37780632--37780674	15	2.7	16	82	7	52	13	2	4	79	1.00
37780975--37781053	29	2.7	29	86	4	104	41	2	20	35	1.66
37781335--37781386	27	1.9	27	92	0	86	32	1	28	36	1.69
37784006--37784050	17	2.8	16	83	6	54	64	4	6	24	1.37
37786358--37786472	50	2.3	50	79	8	126	30	19	16	33	1.94
37788535--37788615	25	3.2	25	80	3	65	33	19	24	22	1.97
37788553--37788704	25	6.0	25	72	7	101	36	15	27	20	1.92
37789963--37790120	79	2.0	80	81	3	185	40	8	13	37	1.74
37790755--37790842	41	2.1	41	93	0	149	30	20	19	29	1.97
37792841--37792882	15	2.8	15	96	0	75	14	16	4	64	1.45
37802025--37802102	5	15.4	5	77	17	63	53	0	1	44	1.08
37802024--37802102	13	5.9	14	72	16	62	53	0	1	45	1.08
37805337--37805370	7	4.9	7	100	0	68	41	0	0	58	0.98
37807281--37807322	14	2.9	15	83	16	54	33	0	14	52	1.42
37807931--37807972	18	2.3	18	87	0	57	23	28	2	45	1.66
37808898--37809232	124	2.7	124	93	0	573	29	15	22	32	1.95
37811617--37811673	24	2.3	25	93	3	98	43	14	0	42	1.44
37812146--37812185	18	2.2	18	100	0	80	40	5	30	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37813017--37813054	20	1.9	20	84	10	51	55	7	2	34	1.43
37813780--37813841	26	2.4	26	78	7	65	61	1	1	35	1.16
37814049--37814103	11	4.9	11	75	20	60	41	1	29	27	1.66
37814049--37814103	22	2.5	21	83	16	67	41	1	29	27	1.66
37817472--37817888	126	3.3	126	89	1	622	26	20	20	33	1.97
37837136--37837177	21	2.0	23	86	13	63	30	7	2	59	1.37
37837517--37837566	25	2.0	25	84	0	64	50	2	2	46	1.24
37840768--37840836	29	2.3	31	80	11	74	36	14	4	44	1.65
37845294--37845343	27	2.0	25	85	14	68	36	4	4	56	1.37
37846154--37846202	24	2.0	25	84	4	64	28	22	2	46	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196