genome.fa.s25.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  22  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6315817--6317048	43	28.4	43	79	6	1123	24	1	29	44	1.61
6316235--6316290	28	2.0	27	86	3	76	23	0	32	44	1.53
6315817--6317034	128	9.3	127	83	7	782	24	1	29	44	1.61
6317331--6317393	21	3.0	21	85	0	81	6	23	36	33	1.80
6317650--6317692	18	2.4	18	84	0	59	46	9	27	16	1.77
6318467--6318504	20	1.9	20	84	10	51	55	7	2	34	1.43
6325869--6326229	104	3.5	104	91	2	582	31	29	19	19	1.96
6332173--6332217	15	3.0	15	93	0	72	37	26	0	35	1.57
6332173--6332217	5	9.0	5	85	0	63	37	26	0	35	1.57
6333481--6333823	37	9.2	37	81	5	377	31	14	15	37	1.88
6333467--6333823	75	4.8	75	86	1	466	31	15	15	37	1.89
6337612--6337728	62	1.9	59	86	5	162	41	4	3	50	1.38
6341069--6341169	45	2.2	45	89	0	148	34	21	16	26	1.95
6341747--6341803	25	2.2	25	81	9	62	63	3	3	29	1.28
6341787--6341854	20	3.6	20	75	15	81	60	1	2	35	1.21
6341811--6341870	16	3.5	16	75	16	66	61	0	1	36	1.06
6341793--6341874	36	2.3	36	100	0	164	64	0	2	32	1.07
6341801--6341876	17	4.4	17	71	17	66	61	0	2	35	1.10
6342621--6342660	21	1.9	21	100	0	80	57	0	0	42	0.98
6343048--6343074	3	9.0	3	100	0	54	66	0	0	33	0.92
6349720--6349826	39	2.5	43	82	13	134	32	7	28	30	1.85
6349920--6350006	19	4.6	20	72	20	53	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6349930--6349962	11	3.0	11	91	8	50	57	0	0	42	0.98
6349907--6350019	21	5.1	21	69	21	79	54	0	0	43	1.12
6349953--6350043	29	3.2	28	69	16	71	51	3	0	45	1.17
6349920--6350048	56	2.3	57	81	9	156	53	3	0	43	1.16
6350343--6350504	77	2.1	77	98	0	315	41	9	7	41	1.65
6365506--6365552	21	2.2	21	85	7	60	42	0	0	57	0.98
6365808--6365851	20	2.1	21	83	4	54	43	6	2	47	1.42
6368608--6368640	16	2.1	16	100	0	66	24	24	6	45	1.75
6386011--6386048	10	3.6	11	86	6	53	0	18	0	81	0.69
6386010--6386061	21	2.5	20	84	9	61	0	19	0	80	0.71
6386016--6386061	7	6.7	7	83	11	60	0	17	0	82	0.67
6388376--6388405	12	2.5	12	94	0	51	36	10	0	53	1.35
6393465--6393497	12	2.8	12	95	0	57	36	9	0	54	1.32
6393910--6393934	6	4.2	6	100	0	50	48	0	0	52	1.00
6393936--6393960	6	4.2	6	100	0	50	52	0	0	48	1.00
6394191--6394254	29	2.2	29	82	2	74	39	10	18	31	1.86
6394887--6394912	13	2.0	13	100	0	52	30	7	38	23	1.83
6395699--6395733	18	1.9	18	88	0	52	5	48	0	45	1.26
6400605--6400636	14	2.1	16	88	11	50	46	0	0	53	1.00
6401114--6401184	21	3.4	21	66	14	65	30	0	22	46	1.52
6401229--6401334	34	3.2	33	82	5	133	33	0	15	50	1.44
6403220--6403739	126	4.1	127	88	1	737	37	17	16	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6403900--6403961	28	2.2	28	91	0	97	37	14	14	33	1.87
6406319--6406356	20	1.9	20	100	0	76	36	18	15	28	1.92
6407242--6407285	18	2.4	18	80	0	52	40	9	27	22	1.84
6409030--6409098	30	2.3	30	89	0	111	37	1	27	33	1.66
6410149--6410210	20	3.2	20	63	9	56	29	6	12	51	1.65
6410137--6410212	38	2.0	38	100	0	152	26	7	10	55	1.61
6410491--6410523	16	2.1	16	88	11	50	45	3	3	48	1.33
6423253--6423289	3	12.3	3	100	0	74	32	0	0	67	0.91
6424493--6424638	49	3.0	49	89	1	220	32	29	13	24	1.94
6425565--6425673	37	3.0	37	93	2	177	24	22	16	36	1.94
6425637--6425896	52	5.6	46	76	19	252	27	23	14	35	1.93
6425735--6425809	37	2.0	37	100	0	150	26	22	13	37	1.91
6425600--6425896	135	2.2	135	94	0	513	27	22	14	35	1.93
6429120--6429153	17	2.0	17	88	0	50	50	11	20	17	1.77
6430092--6430171	41	2.0	41	94	0	142	27	20	23	28	1.99
6430097--6430211	41	2.8	41	86	0	131	25	20	26	26	1.99
6430554--6430622	18	3.3	18	70	30	57	34	5	14	44	1.69
6430565--6430639	25	3.2	25	78	18	106	30	8	16	45	1.75
6430550--6430639	45	2.0	45	100	0	180	33	6	15	44	1.73
6430550--6430618	20	3.2	20	77	18	84	36	5	14	43	1.70
6434941--6435014	37	2.0	37	97	0	139	33	18	22	24	1.97
6436336--6436363	14	2.0	14	100	0	56	64	7	7	21	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6439407--6439462	28	2.0	27	83	13	69	57	0	3	39	1.16
6441989--6442036	17	2.8	17	93	0	78	60	6	14	18	1.55
6443744--6443768	13	1.9	13	100	0	50	36	16	8	40	1.77
6448475--6448551	38	2.0	38	87	0	109	25	11	10	51	1.70
6450469--6450505	17	2.1	18	95	5	67	10	13	24	51	1.73
6461311--6461532	77	2.9	76	80	11	245	15	16	17	50	1.78
6474967--6475026	30	2.0	30	93	0	102	43	6	6	43	1.57
6475068--6475129	28	2.1	27	82	11	70	29	12	8	50	1.69
6481002--6481054	26	2.0	26	100	0	106	26	24	11	37	1.89
6481755--6481875	56	2.2	56	93	1	217	60	4	21	14	1.50
6484032--6484096	16	4.1	16	73	0	58	44	4	21	29	1.72
6484257--6484320	26	2.7	24	81	13	78	54	0	0	45	0.99
6484370--6484419	19	2.5	21	87	9	70	56	0	4	40	1.18
6484957--6484981	5	5.0	5	100	0	50	20	0	40	40	1.52
6485189--6485237	16	3.1	16	90	0	62	36	2	36	24	1.67
6485460--6485502	15	2.9	15	83	13	54	53	0	0	46	1.00
6485451--6485492	15	2.7	16	82	14	52	52	2	0	45	1.13
6485471--6485506	18	2.0	18	89	10	56	58	0	0	41	0.98
6485460--6485502	13	3.1	14	86	6	52	53	0	0	46	1.00
6485454--6485871	59	7.0	61	68	16	250	50	4	2	42	1.37
6485571--6485622	15	3.6	15	80	12	56	53	1	0	44	1.11
6485710--6485746	16	2.2	17	86	13	51	54	0	2	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6485457--6485867	120	3.4	120	95	1	689	49	4	2	42	1.37
6485908--6485968	28	2.2	28	85	5	81	50	3	0	45	1.17
6485883--6486089	91	2.3	91	89	1	308	46	5	3	44	1.42
6486660--6486736	14	5.0	15	71	20	52	42	14	9	33	1.77
6486676--6486715	20	2.0	20	90	0	62	50	12	10	27	1.72
6486664--6486730	34	1.9	35	90	3	109	46	13	8	31	1.74
6490095--6490434	41	8.3	41	90	0	527	22	28	20	29	1.98
6490101--6490434	82	4.1	82	100	0	668	22	28	20	29	1.98
6496342--6496441	41	2.4	41	91	0	155	23	32	20	25	1.98
6504099--6504202	41	2.5	41	88	0	145	23	29	19	27	1.98
6504760--6504805	22	2.1	22	88	4	67	10	19	26	43	1.84
6504895--6505124	85	2.7	84	83	7	313	31	32	15	20	1.93
6504895--6505124	42	5.4	42	86	6	286	31	32	15	20	1.93
6508381--6508406	11	2.4	11	100	0	52	69	0	15	15	1.20
6510307--6510344	12	2.8	14	81	18	53	39	36	2	21	1.67
6510359--6510450	34	2.7	34	82	1	103	34	42	2	20	1.64
6510849--6511042	41	4.8	41	92	2	329	27	31	24	16	1.96
6510849--6511036	80	2.3	80	93	1	313	27	31	23	17	1.97
6518093--6518147	27	2.0	27	96	0	101	23	7	20	49	1.74
6520421--6520576	80	2.0	80	90	0	249	34	14	16	34	1.89
6521053--6521090	14	2.6	14	88	12	51	2	21	2	73	1.07
6526673--6526771	42	2.3	42	82	5	119	30	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6526663--6526812	44	3.5	41	80	8	140	29	26	18	26	1.98
6527768--6527798	15	2.1	15	100	0	62	41	12	12	32	1.81
6532367--6532570	106	1.9	108	88	4	315	35	19	16	28	1.93
6533587--6533625	12	3.2	12	85	0	51	56	2	2	38	1.27
6539878--6539916	19	2.1	19	100	0	78	33	15	5	46	1.68
6546305--6546329	13	1.9	13	100	0	50	24	16	8	52	1.70
6546426--6546486	31	2.0	31	100	0	122	27	13	19	39	1.89
6550819--6550843	13	1.9	13	100	0	50	24	16	8	52	1.70
6557513--6557566	22	2.5	22	78	6	56	51	1	1	44	1.22
6557627--6557685	29	2.1	28	80	3	64	38	3	1	55	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196