genome.fa.s25.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  126  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37847492--37847531	18	2.3	18	87	8	57	27	2	7	62	1.35
37849795--37849867	37	2.0	37	94	0	128	35	23	9	31	1.87
37850234--37850272	11	3.5	11	82	0	51	25	12	2	58	1.47
37852989--37853015	13	2.1	13	100	0	54	37	14	7	40	1.74
37854977--37855522	142	3.8	143	82	7	660	30	8	21	38	1.84
37857064--37857351	142	2.0	140	90	2	452	34	10	20	34	1.87
37868631--37868677	24	2.0	24	91	0	76	34	21	27	17	1.95
37868703--37868766	27	2.5	26	78	12	69	35	21	23	18	1.95
37876284--37876402	38	3.1	39	79	4	125	25	13	21	40	1.89
37877555--37877596	21	2.0	21	85	0	57	33	4	19	42	1.72
37878340--37878405	26	2.5	26	83	7	80	19	24	19	36	1.95
37887165--37887215	22	2.4	21	83	6	59	29	23	31	15	1.95
37887174--37887215	22	1.9	22	90	0	66	33	21	30	14	1.93
37892540--37892642	41	2.5	41	83	0	125	30	18	20	31	1.96
37893085--37893116	9	3.4	10	83	16	50	40	9	9	40	1.70
37898199--37898234	4	9.0	4	100	0	72	50	25	0	25	1.50
37903699--37903763	2	33.5	2	73	6	53	52	1	4	41	1.31
37905284--37906103	44	18.6	43	66	19	288	28	24	16	29	1.97
37905314--37905526	90	2.4	90	86	4	290	27	24	17	30	1.97
37905378--37906105	132	5.5	132	91	0	1186	28	24	16	29	1.97
37906108--37906825	89	8.1	89	87	0	1004	23	23	24	28	1.99
37918050--37918087	13	2.8	14	80	19	53	65	5	7	21	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37919352--37919430	38	2.1	38	97	0	149	24	5	10	60	1.48
37920220--37920326	45	2.4	45	92	3	171	24	22	24	28	1.99
37920343--37920454	44	2.5	44	80	8	129	30	16	19	33	1.95
37920647--37920844	50	4.0	49	72	3	162	26	25	21	27	1.99
37920653--37920836	100	1.8	100	87	2	271	26	23	21	28	1.99
37920656--37920867	100	2.1	100	79	3	237	27	23	21	27	1.99
37920461--37921273	267	3.0	264	88	1	1194	26	25	20	28	1.99
37922616--37922666	13	3.8	13	81	2	57	3	15	0	80	0.86
37922622--37922663	18	2.2	20	91	8	70	4	11	0	83	0.79
37923466--37923531	25	2.6	25	88	9	89	59	4	15	21	1.54
37927445--37927496	23	2.3	23	82	0	59	65	3	0	30	1.10
37929273--37929324	25	2.1	24	89	3	77	61	11	13	13	1.57
37933201--37933229	14	2.1	14	100	0	58	37	0	20	41	1.53
37939013--37939050	16	2.5	15	83	8	51	28	0	0	71	0.87
37946897--37947044	57	2.5	58	83	11	185	31	21	24	22	1.98
37948601--37948655	19	2.8	19	81	13	67	25	5	7	61	1.44
37948602--37948663	19	3.2	19	78	15	65	27	4	6	61	1.41
37951633--37951704	24	2.9	24	76	12	67	29	1	5	63	1.25
37951829--37951871	18	2.5	17	80	3	50	30	4	2	62	1.28
37953398--37953432	17	2.1	17	100	0	70	34	11	14	40	1.82
37957402--37957434	7	4.7	7	88	11	50	72	0	15	12	1.12
37957402--37957434	13	2.3	15	90	10	52	72	0	15	12	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37958746--37959628	50	17.7	50	68	5	485	28	22	25	23	1.99
37958726--37959642	100	9.2	100	88	1	1227	28	22	25	24	1.99
37961032--37961103	24	2.9	24	76	12	67	29	1	5	63	1.25
37961229--37961271	18	2.5	17	80	3	50	30	4	2	62	1.28
37963399--37963429	15	2.1	15	100	0	62	41	12	0	45	1.42
37964363--37964427	31	2.1	31	88	0	94	43	13	10	32	1.79
37968355--37968395	21	2.0	21	85	0	55	41	0	4	53	1.22
37970068--37970134	33	2.0	33	97	0	125	22	23	32	20	1.98
37972696--37972741	20	2.2	21	77	11	51	36	2	13	47	1.54
37979901--37979981	28	2.9	27	87	7	117	60	16	4	18	1.53
37980797--37980855	29	2.0	30	90	3	93	50	13	5	30	1.63
37980807--37980877	29	2.4	28	79	11	79	45	14	7	33	1.71
37985384--37985465	39	2.1	39	95	0	146	37	26	7	28	1.83
37993447--37993507	26	2.4	25	78	10	61	42	1	3	52	1.27
37995467--37995491	6	4.2	6	100	0	50	20	0	0	80	0.72
37999100--37999161	18	3.5	18	73	4	72	66	0	3	30	1.08
37999099--37999166	35	1.9	36	93	3	120	64	0	2	32	1.08
38002733--38002790	30	1.9	30	85	3	80	43	8	13	34	1.75
38008487--38008651	43	3.9	42	80	6	170	33	27	16	22	1.95
38012389--38012448	3	20.0	3	76	19	54	63	1	5	30	1.25
38012388--38012448	18	3.6	18	82	6	74	62	1	6	29	1.30
38036074--38036104	16	1.9	16	93	0	53	6	3	41	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38039915--38039987	23	3.0	24	82	13	78	24	26	20	28	1.99
38040142--38040180	20	2.0	20	84	0	51	35	7	15	41	1.76
38042720--38042785	27	2.4	27	82	10	71	40	4	3	51	1.38
38045185--38045221	3	12.3	3	100	0	74	32	0	0	67	0.91
38048060--38048935	44	20.1	43	70	15	262	27	23	19	29	1.98
38048313--38048521	89	2.3	89	94	0	373	27	24	18	29	1.98
38048048--38048910	89	9.9	88	71	12	322	27	23	19	29	1.98
38048060--38048782	305	2.4	298	82	8	879	27	23	19	29	1.98
38048414--38048909	260	1.9	260	89	1	769	28	23	19	28	1.98
38050134--38050168	11	3.1	11	95	4	61	0	20	0	80	0.72
38058102--38058158	25	2.2	27	87	6	82	66	0	3	29	1.08
38058102--38058159	26	2.2	27	84	3	73	67	0	3	29	1.07
38059430--38059632	30	6.7	30	76	7	162	45	10	3	40	1.56
38059414--38059648	60	3.9	60	76	11	203	42	11	3	41	1.60
38059400--38059632	30	7.8	28	73	11	160	45	11	3	39	1.58
38059557--38059632	31	2.6	28	81	10	89	51	13	0	35	1.41
38065669--38065697	13	2.2	13	100	0	58	44	6	6	41	1.58
38068740--38068792	26	2.0	26	100	0	106	43	3	22	30	1.71
38076035--38076072	19	2.0	19	94	0	67	47	7	5	39	1.55
38077422--38077473	26	2.0	26	81	7	61	46	0	3	50	1.20
38077542--38077606	27	2.4	27	97	0	121	27	23	33	15	1.95
38077840--38077865	12	2.2	12	100	0	52	38	0	15	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38077996--38078207	27	8.7	25	83	13	236	31	0	14	53	1.47
38077965--38078252	49	6.0	48	78	17	232	31	1	14	52	1.49
38078095--38078233	8	16.4	8	65	19	59	33	1	15	49	1.53
38077932--38078186	19	13.5	19	72	18	169	31	1	13	53	1.47
38078037--38078207	75	2.3	76	97	1	326	32	1	14	52	1.49
38078037--38078252	75	2.9	74	91	5	294	31	1	15	51	1.52
38078400--38078520	38	3.2	38	96	1	215	55	4	1	38	1.29
38079761--38079815	22	2.5	22	88	8	76	1	30	3	63	1.22
38081747--38082207	112	4.4	98	80	15	377	35	15	16	32	1.90
38081899--38082460	112	4.9	112	86	9	776	33	15	16	35	1.90
38082089--38082445	126	3.0	122	86	12	549	32	16	16	35	1.91
38081975--38082445	237	2.0	239	92	3	799	32	15	16	35	1.91
38082256--38082510	112	2.4	107	88	5	354	40	13	16	30	1.86
38082496--38082881	108	3.6	108	90	4	563	29	16	15	39	1.89
38085255--38085280	9	2.9	9	100	0	52	80	0	7	11	0.89
38085431--38085469	11	3.5	11	82	6	51	74	2	2	20	1.06
38086927--38087401	89	5.3	88	71	11	329	29	20	17	32	1.95
38087190--38087398	94	2.3	88	84	5	256	29	22	17	30	1.96
38086921--38087404	45	10.8	44	73	9	343	29	20	17	32	1.95
38102549--38102580	15	2.0	17	88	11	50	31	3	18	46	1.65
38106196--38106279	26	3.2	26	84	0	114	17	25	22	34	1.96
38106320--38106374	24	2.3	24	83	0	65	14	27	25	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38109430--38109509	3	26.0	3	74	14	56	33	3	3	58	1.33
38109895--38110397	125	4.0	125	90	1	767	29	17	21	31	1.96
38113586--38115261	21	78.2	21	82	7	1820	25	0	27	46	1.54
38115291--38115329	19	2.2	19	86	9	55	46	0	0	53	1.00
38116702--38116740	20	2.0	20	85	10	53	53	7	2	35	1.43
38117728--38117770	11	3.8	12	80	20	56	39	0	32	27	1.57
38118199--38118263	34	1.9	34	84	12	89	41	10	0	47	1.38
38118754--38119120	189	1.9	188	88	1	547	29	18	15	36	1.92
38127698--38127731	13	2.5	14	85	9	52	32	11	0	55	1.36
38130427--38130864	120	3.7	120	97	0	833	43	0	5	50	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196