genome.fa.s25.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  153  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45173187--45173391	57	3.5	56	69	21	168	49	2	2	44	1.32
45173389--45173853	181	2.6	179	95	1	813	46	3	3	45	1.39
45173389--45173853	90	5.1	91	95	1	819	46	3	3	45	1.39
45177741--45177794	25	2.2	25	83	6	65	12	14	16	55	1.69
45185050--45185116	31	2.2	31	86	0	89	46	8	14	29	1.76
45185057--45185125	31	2.2	31	86	0	102	44	11	13	30	1.78
45185675--45185721	17	2.7	17	81	15	60	29	0	4	65	1.11
45190839--45190879	21	2.0	21	90	0	64	29	21	29	19	1.98
45196183--45196370	42	4.5	42	86	2	245	28	21	20	29	1.98
45197322--45197355	4	8.5	4	100	0	68	50	26	0	23	1.50
45198427--45198456	4	7.5	4	92	0	51	46	23	3	26	1.68
45199579--45199647	32	2.2	32	83	0	84	11	24	10	53	1.68
45201680--45201756	30	2.6	29	77	8	73	44	14	10	31	1.79
45202975--45203166	83	2.3	84	90	3	289	17	15	29	36	1.91
45204183--45204223	21	2.0	21	90	0	64	14	2	41	41	1.59
45204183--45204306	28	4.4	28	71	10	94	11	0	45	42	1.45
45204184--45204250	34	2.0	34	81	0	80	14	1	44	38	1.55
45204204--45204250	7	6.9	7	85	4	51	12	2	48	36	1.53
45204205--45204245	20	2.1	19	86	4	55	12	2	48	36	1.54
45204224--45204318	7	13.1	7	79	3	73	8	0	48	43	1.33
45204255--45204318	21	2.9	22	83	4	85	3	0	46	50	1.17
45204260--45204315	8	7.5	8	82	11	57	3	0	46	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45205714--45205759	24	1.9	24	82	8	58	30	8	10	50	1.68
45206019--45206056	18	2.1	18	95	0	67	18	13	15	52	1.74
45206922--45207019	24	4.2	23	63	27	55	40	3	7	48	1.46
45206853--45207640	69	11.3	69	96	0	1335	41	5	5	47	1.50
45206897--45207621	21	31.4	21	62	26	115	41	4	5	47	1.49
45207131--45207228	24	4.2	23	63	27	55	40	3	7	48	1.46
45206853--45207640	209	3.8	209	96	0	1402	41	5	5	47	1.50
45207340--45207506	24	7.2	23	62	28	61	40	4	6	48	1.50
45207750--45207786	19	1.9	19	100	0	74	48	16	2	32	1.60
45207733--45207823	47	1.9	47	97	0	173	49	14	1	35	1.51
45207915--45207968	16	3.3	16	89	2	81	50	16	0	33	1.46
45208036--45208113	9	9.3	9	74	16	78	43	19	2	34	1.64
45208036--45208113	25	3.1	25	85	7	88	43	19	2	34	1.64
45208064--45208111	16	3.0	16	93	0	87	47	18	2	31	1.60
45213707--45213752	19	2.5	18	86	6	65	26	13	0	60	1.32
45213934--45214293	43	8.3	44	71	14	155	25	17	27	30	1.97
45213980--45214081	44	2.3	45	83	3	118	24	15	28	31	1.96
45213996--45214293	129	2.3	127	76	12	293	25	18	26	29	1.98
45214830--45214859	15	1.9	16	93	6	53	36	0	0	63	0.95
45218341--45218416	9	8.4	9	84	5	91	27	7	19	44	1.78
45220286--45220366	39	2.1	39	97	0	153	19	9	19	50	1.75
45226286--45226345	26	2.3	26	76	0	66	21	23	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45226443--45226540	25	4.0	25	75	6	92	23	22	18	35	1.95
45228472--45228637	83	2.0	83	93	0	287	38	15	20	25	1.91
45230094--45230151	30	1.9	31	89	3	91	48	3	3	44	1.36
45230276--45230341	34	1.9	34	87	6	98	33	9	10	46	1.70
45230429--45230472	18	2.4	18	81	7	54	38	0	0	61	0.96
45230576--45230640	34	1.9	34	93	6	114	41	4	10	43	1.60
45231207--45231233	12	2.2	12	100	0	54	33	18	14	33	1.92
45231266--45231318	21	2.7	19	69	11	52	41	22	9	26	1.84
45232492--45232534	17	2.5	17	84	0	59	51	34	4	9	1.55
45244314--45244548	89	2.7	88	80	4	231	31	19	23	25	1.98
45244359--45244572	44	4.8	45	78	5	186	32	17	22	27	1.97
45244287--45244633	133	2.6	133	79	2	417	30	18	22	28	1.97
45245756--45245814	24	2.5	23	72	22	59	13	5	3	77	1.05
45263148--45263177	7	4.1	7	95	4	51	53	0	0	46	1.00
45274267--45274301	16	2.2	16	89	0	52	54	0	5	40	1.24
45274341--45274397	23	2.3	23	85	11	69	38	3	19	38	1.69
45274353--45274397	23	2.0	23	90	0	72	42	2	15	40	1.59
45274359--45274412	23	2.3	23	87	3	72	48	0	11	40	1.39
45274446--45274475	11	2.6	11	94	5	51	73	0	0	26	0.84
45276376--45276562	81	2.3	82	84	8	252	28	17	23	31	1.97
45276273--45276683	44	9.7	44	70	12	250	27	19	20	32	1.97
45276266--45276663	210	1.9	210	88	2	602	26	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45276458--45276711	129	2.0	127	92	3	420	24	20	22	31	1.98
45276718--45277310	50	11.9	50	73	5	450	24	20	22	32	1.98
45276770--45277310	99	5.5	99	90	0	803	24	20	22	31	1.98
45282258--45282630	105	3.6	105	94	1	642	30	30	20	19	1.97
45285044--45285161	46	2.6	46	78	8	123	47	0	11	39	1.46
45285235--45285288	25	2.1	26	93	6	92	46	0	11	42	1.39
45285240--45285295	27	2.2	25	87	6	76	51	1	10	35	1.47
45289842--45289922	35	2.3	34	83	8	101	49	2	9	38	1.49
45295240--45295371	66	2.0	66	94	1	230	48	16	6	28	1.70
45297204--45297243	14	2.8	14	80	3	53	60	0	0	40	0.97
45297291--45297338	18	2.7	19	75	12	57	47	4	6	41	1.48
45308084--45308216	60	2.2	58	78	12	153	31	16	11	40	1.84
45314465--45314659	25	7.9	25	74	12	152	20	27	21	31	1.98
45314534--45314645	49	2.3	50	82	3	138	17	27	22	32	1.97
45314467--45314681	50	4.3	50	76	9	147	20	26	21	30	1.98
45315976--45316205	105	2.2	101	81	7	241	26	23	16	33	1.96
45329653--45329708	21	2.7	21	83	5	69	33	33	3	28	1.75
45332100--45332161	30	2.1	29	82	11	72	50	3	0	46	1.17
45332331--45332383	13	4.1	13	78	9	63	37	28	3	30	1.75
45334346--45334371	7	3.7	7	100	0	52	46	11	0	42	1.40
45337894--45337921	14	2.0	14	100	0	56	21	14	7	57	1.61
45339842--45339883	20	2.0	21	86	4	59	54	7	4	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45342687--45342755	16	4.2	16	96	3	129	24	0	37	37	1.56
45342687--45342755	33	2.1	32	97	2	129	24	0	37	37	1.56
45342736--45342826	45	2.0	45	85	2	121	27	6	28	37	1.82
45342991--45343027	19	2.0	19	85	15	51	54	0	0	45	1.00
45343069--45343254	59	3.1	58	69	19	157	51	3	2	42	1.34
45342971--45343260	120	2.4	120	89	3	456	49	4	2	43	1.35
45343685--45343719	14	2.5	14	100	0	70	34	25	8	31	1.86
45353386--45353423	3	12.7	3	100	0	76	34	0	0	65	0.93
45353587--45353647	3	20.3	3	100	0	122	0	32	0	67	0.91
45358700--45358873	25	7.0	25	77	8	133	36	20	24	18	1.95
45362041--45362196	30	5.2	30	78	9	135	33	21	5	39	1.77
45362059--45362196	59	2.3	58	81	8	152	34	19	6	39	1.78
45362744--45362814	11	6.5	11	76	19	69	77	0	19	2	0.89
45362744--45362793	11	4.5	11	85	5	73	74	0	24	2	0.93
45362744--45362810	23	3.0	22	81	10	75	77	0	19	2	0.89
45362744--45362813	34	2.2	33	87	12	101	77	0	20	2	0.90
45362912--45362967	12	4.9	11	82	8	60	80	10	8	0	0.91
45363650--45364013	17	20.2	17	68	20	163	32	12	11	43	1.79
45363649--45364013	36	10.1	36	72	15	240	32	12	11	43	1.79
45363864--45364050	53	3.5	53	72	17	147	36	11	9	42	1.74
45371434--45371462	10	3.0	10	95	5	51	31	27	0	41	1.56
45374934--45374968	10	3.7	9	88	11	52	88	11	0	0	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45374928--45374968	20	2.1	20	95	4	75	85	14	0	0	0.60
45375857--45377705	76	23.6	76	88	6	2151	28	16	19	36	1.93
45377900--45378055	30	5.2	29	81	10	156	33	23	4	38	1.75
45378398--45378437	19	2.0	20	90	9	64	60	25	10	5	1.49
45378428--45378468	21	2.0	21	90	0	64	70	12	14	2	1.26
45378602--45378697	11	8.5	11	81	11	106	77	0	21	1	0.84
45378602--45378697	23	4.3	23	75	15	94	77	0	21	1	0.84
45378602--45378698	34	2.9	33	89	10	144	77	0	21	1	0.83
45378794--45378856	11	5.4	11	71	14	54	80	9	7	1	0.95
45378795--45378852	12	4.7	12	78	14	55	82	6	8	1	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196