genome.fa.s25.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  155  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45645338--45645599	93	2.8	91	78	2	272	45	14	11	29	1.79
45648148--45648187	21	1.9	21	85	10	55	67	5	5	22	1.30
45655927--45655988	6	9.7	6	74	19	54	27	1	3	67	1.15
45655932--45655988	20	2.8	20	72	15	55	28	1	3	66	1.18
45655926--45655988	27	2.4	26	76	10	67	26	1	3	68	1.14
45655927--45655989	26	2.4	27	76	10	69	26	1	3	68	1.14
45655924--45655997	34	2.2	32	84	13	96	22	2	2	71	1.11
45658808--45658840	14	2.5	13	90	9	57	84	0	0	15	0.61
45658807--45658840	18	1.9	17	88	5	50	82	0	0	17	0.67
45663434--45663488	5	11.2	5	78	18	62	60	1	0	38	1.08
45663422--45663488	29	2.3	30	85	12	86	58	2	0	38	1.14
45663434--45663483	19	2.7	19	87	6	68	60	2	0	38	1.09
45669218--45669246	7	4.1	7	100	0	58	13	44	13	27	1.82
45674441--45674516	29	2.6	29	80	0	89	46	10	13	30	1.76
45675426--45675450	7	3.6	7	100	0	50	88	0	0	12	0.53
45688892--45688944	27	2.0	27	88	7	81	39	5	11	43	1.64
45690998--45691068	31	2.3	31	80	0	79	29	32	18	19	1.96
45691020--45691078	31	1.9	31	85	0	82	27	28	22	22	1.99
45691060--45691201	76	1.9	76	80	2	169	19	22	27	30	1.98
45692111--45692232	22	5.5	22	77	8	122	31	21	16	31	1.95
45692111--45692232	45	2.7	44	78	6	129	31	21	16	31	1.95
45692499--45692598	24	4.2	23	78	15	98	24	14	32	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45692602--45692726	22	5.6	23	73	9	80	33	12	24	29	1.92
45692623--45692742	23	5.3	23	72	9	86	31	11	25	30	1.91
45692602--45692739	67	2.1	67	98	0	267	32	11	25	30	1.91
45695709--45695809	44	2.3	44	79	5	114	36	15	23	23	1.94
45698750--45698800	23	2.2	23	89	6	77	37	0	7	54	1.29
45704132--45704169	13	3.0	13	84	7	51	76	10	5	7	1.15
45704148--45704194	19	2.5	19	79	6	51	72	6	2	19	1.17
45705811--45705867	21	2.7	21	73	10	62	19	22	17	40	1.91
45708872--45708903	16	1.9	17	93	6	57	43	12	0	43	1.42
45708854--45708895	21	2.0	20	86	4	57	50	7	0	42	1.30
45716048--45716073	12	2.2	12	100	0	52	30	19	7	42	1.79
45716892--45716960	27	2.6	27	83	0	93	15	36	30	17	1.91
45717013--45717125	10	11.7	10	70	23	66	69	0	30	0	0.89
45717013--45717126	14	8.3	14	70	21	73	69	0	30	0	0.89
45717007--45717113	38	2.8	38	82	9	139	67	0	32	0	0.91
45717012--45717132	19	6.8	19	71	18	84	68	0	31	0	0.90
45716996--45717126	72	1.9	68	85	9	183	65	0	34	0	0.93
45717052--45717164	50	2.4	46	89	5	163	69	0	28	0	1.00
45717013--45717164	50	3.3	46	80	10	150	69	0	29	0	0.98
45717012--45717157	10	14.8	10	70	20	62	69	0	30	0	0.94
45717091--45717154	22	2.9	22	77	11	69	73	0	25	1	0.92
45717562--45717605	21	2.1	21	100	0	88	52	0	9	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45717583--45718312	322	2.3	322	92	1	1218	51	7	10	31	1.64
45717583--45718311	158	4.5	157	72	16	591	51	7	10	31	1.64
45731951--45732086	43	3.2	41	77	12	132	50	13	3	32	1.58
45732362--45732509	27	5.5	27	85	2	147	18	28	30	22	1.97
45737606--45737749	23	6.3	23	81	1	173	30	25	19	25	1.98
45737606--45737748	46	3.1	46	87	1	207	30	25	19	24	1.98
45744232--45744291	17	3.5	17	80	17	61	31	1	18	48	1.58
45744243--45744289	17	2.8	16	84	9	67	27	2	19	51	1.58
45745517--45745701	46	4.0	46	94	0	316	34	9	28	28	1.88
45748958--45749038	40	2.0	40	97	0	153	32	13	2	51	1.54
45749532--45749572	22	1.9	21	85	14	57	29	7	7	56	1.54
45753575--45753599	2	12.5	2	100	0	50	0	52	0	48	1.00
45754359--45754426	35	1.9	35	85	8	93	25	13	4	57	1.54
45765416--45765456	20	2.1	20	86	4	57	36	0	2	60	1.10
45768081--45768841	114	6.7	114	81	2	814	33	17	22	27	1.96
45768152--45768826	228	3.0	228	93	0	1134	33	16	22	27	1.96
45769150--45769178	14	2.1	14	93	6	51	6	0	44	48	1.29
45769699--45769725	12	2.2	12	100	0	54	59	0	0	40	0.98
45771231--45771334	45	2.3	44	80	11	113	31	7	17	43	1.77
45772358--45772667	41	7.5	41	73	8	261	41	17	4	37	1.68
45772430--45772667	126	1.9	126	91	1	388	42	17	3	36	1.68
45772637--45772775	25	5.5	25	77	7	138	43	16	2	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45772430--45772748	126	2.6	126	84	7	329	42	17	3	36	1.66
45772802--45772927	9	14.0	9	82	0	162	49	18	0	31	1.53
45772804--45772909	36	2.9	36	97	0	194	49	18	0	31	1.55
45778436--45778504	21	3.3	21	87	0	75	37	20	37	4	1.72
45778490--45778537	12	4.0	12	86	0	69	43	14	37	4	1.65
45778950--45779260	42	7.4	42	82	6	360	25	21	20	31	1.98
45782154--45782190	9	4.1	9	92	0	65	29	10	13	45	1.77
45786577--45787231	88	7.4	88	89	0	1004	28	27	24	19	1.99
45787683--45787804	44	2.8	44	86	2	165	30	20	21	27	1.98
45788238--45788293	19	2.8	19	89	5	76	37	7	16	39	1.76
45788252--45788317	23	3.0	24	83	12	72	33	7	21	37	1.82
45788621--45788651	11	2.8	11	100	0	62	25	0	16	58	1.38
45788790--45788833	17	2.6	17	85	3	63	40	11	0	47	1.39
45788994--45789073	28	2.8	28	79	9	74	32	5	5	57	1.42
45788994--45789073	30	2.8	27	80	12	81	32	5	5	57	1.42
45790920--45791117	99	2.0	100	85	3	265	36	14	12	36	1.84
45791519--45791583	27	2.5	24	78	11	67	66	6	3	24	1.29
45791518--45791585	25	2.6	27	79	9	79	64	5	2	26	1.30
45794232--45794278	20	2.6	17	76	20	51	48	6	0	44	1.28
45798286--45798323	14	2.8	13	92	7	67	47	5	10	36	1.61
45798561--45798771	69	3.1	68	80	4	244	21	23	14	40	1.90
45798628--45798683	16	3.4	16	69	16	51	19	23	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45798561--45798759	103	1.9	103	92	0	335	21	23	15	39	1.92
45798561--45798771	34	6.1	34	82	3	217	21	23	14	40	1.90
45805698--45805761	26	2.5	25	85	7	76	53	3	4	39	1.38
45805698--45805761	25	2.5	25	82	12	69	53	3	4	39	1.38
45809243--45809278	14	2.6	15	83	16	51	50	5	0	44	1.25
45811206--45811462	125	2.1	124	87	2	363	31	15	20	31	1.94
45814737--45815623	23	34.5	28	76	18	567	28	0	23	47	1.55
45814683--45815129	51	8.3	57	74	17	248	30	1	23	44	1.61
45814817--45815466	23	26.6	24	80	12	631	28	0	23	48	1.54
45814863--45815606	46	15.9	46	80	15	714	27	0	22	48	1.52
45815409--45815530	64	2.0	62	87	10	180	24	0	22	52	1.47
45815468--45815546	22	3.3	22	81	15	77	26	0	22	50	1.49
45815514--45815583	34	2.1	34	97	2	133	25	0	25	48	1.51
45817762--45817795	15	2.3	15	90	5	52	67	5	0	26	1.13
45817894--45817950	29	1.9	30	92	3	98	61	1	0	36	1.07
45817992--45818033	22	1.9	22	90	0	66	33	0	33	33	1.58
45818005--45818063	30	2.0	30	90	6	93	32	0	37	30	1.58
45817983--45818082	52	1.9	51	85	2	137	34	0	32	34	1.58
45818035--45818082	22	2.2	22	92	0	78	37	0	31	31	1.58
45818480--45818538	29	2.0	30	83	6	75	40	0	40	18	1.51
45819164--45819206	21	2.0	21	90	0	68	23	11	13	51	1.74
45819531--45819586	29	1.9	29	85	7	78	25	16	19	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45831578--45831679	42	2.4	42	82	6	125	46	16	22	14	1.84
45831578--45831679	21	4.9	21	80	4	107	46	16	22	14	1.84
45833024--45833064	20	2.0	22	85	9	59	39	31	4	24	1.76
45833569--45833692	42	3.0	42	78	3	133	41	16	24	16	1.89
45833579--45833679	21	4.8	21	67	8	62	44	17	22	14	1.86
45833800--45833884	24	3.5	24	85	3	116	24	25	7	42	1.80
45835194--45835287	24	3.9	24	92	2	161	23	28	8	39	1.84
45835192--45835287	49	2.0	49	97	0	183	22	28	8	40	1.83
45838299--45838621	46	7.0	46	93	0	529	29	27	8	34	1.87
45843330--45843443	42	2.7	42	86	2	138	23	20	28	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196