genome.fa.s25.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  56  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15690577--15690736	30	5.4	30	73	5	146	23	28	10	37	1.88
15690543--15690736	90	2.2	89	83	2	237	25	27	9	37	1.87
15690577--15690734	60	2.7	60	80	6	196	23	28	10	37	1.88
15690727--15690783	29	2.0	29	85	0	78	26	22	15	35	1.94
15691920--15691967	21	2.4	20	93	6	80	29	14	16	39	1.88
15692973--15693013	20	2.0	20	95	0	73	60	0	31	7	1.24
15696152--15696210	29	2.0	30	90	3	93	49	11	6	32	1.66
15697889--15697913	6	4.2	6	100	0	50	32	0	16	52	1.44
15705024--15705055	7	4.6	7	100	0	64	40	0	0	59	0.97
15709807--15710115	114	2.7	114	75	6	286	28	17	22	31	1.97
15710788--15710820	15	2.2	15	94	0	57	21	0	51	27	1.48
15712322--15712386	20	3.3	19	73	16	51	38	16	21	23	1.93
15712642--15712697	21	2.6	22	83	5	62	16	0	46	37	1.47
15712638--15712698	29	2.1	28	88	8	88	16	0	42	40	1.48
15715078--15715106	15	1.9	15	100	0	58	13	20	20	44	1.85
15716183--15716232	17	3.2	17	78	21	72	36	6	6	52	1.51
15716201--15716228	13	2.2	13	100	0	56	39	7	7	46	1.59
15716224--15716262	16	2.5	15	88	8	60	41	0	5	53	1.23
15716194--15716342	62	2.4	61	81	4	174	36	5	10	48	1.60
15716362--15716397	16	2.2	16	90	0	54	44	16	0	38	1.48
15716384--15716444	21	3.0	21	80	7	72	42	11	3	42	1.57
15716481--15716559	21	3.8	21	83	5	97	40	13	6	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15716386--15716626	116	2.1	116	98	0	464	42	12	4	40	1.64
15716620--15716657	9	4.2	9	86	0	58	50	15	0	34	1.45
15716502--15716688	101	1.9	95	89	6	284	45	12	3	38	1.59
15716636--15716679	22	2.0	23	86	4	63	54	13	0	31	1.39
15716636--15716732	32	3.2	29	78	11	95	52	12	1	34	1.46
15716636--15716733	20	4.7	20	73	15	74	52	13	1	33	1.47
15716770--15717030	9	28.8	9	77	3	263	50	15	1	32	1.55
15716786--15717030	27	9.0	27	85	1	337	49	15	2	32	1.57
15722468--15722518	21	2.4	21	93	0	84	35	17	43	3	1.68
15722898--15723001	42	2.5	42	91	1	172	40	20	22	17	1.91
15727466--15727520	24	2.3	23	78	9	65	47	7	30	14	1.71
15728090--15728646	281	2.0	281	82	2	688	27	21	19	31	1.97
15728975--15729026	26	2.0	26	92	0	86	19	17	21	42	1.89
15731729--15731903	95	1.8	95	83	2	235	31	27	18	22	1.97
15731993--15732262	102	2.6	102	78	5	274	29	18	18	34	1.94
15752020--15752089	25	2.8	25	78	6	70	34	21	21	22	1.97
15752730--15752771	21	2.0	21	85	0	57	38	23	0	38	1.55
15752741--15752771	10	2.9	11	90	9	55	35	29	0	35	1.58
15760472--15760611	46	3.0	46	93	0	235	27	26	8	37	1.86
15768717--15768765	24	2.0	24	96	0	89	22	10	16	51	1.74
15768724--15768779	24	2.4	24	87	3	78	25	8	19	46	1.79
15774262--15774301	12	3.6	11	80	12	55	82	0	17	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15774270--15774302	6	5.5	6	100	0	66	84	0	15	0	0.61
15775843--15775916	37	2.0	37	92	5	123	18	6	6	67	1.36
15789669--15789741	37	2.0	37	91	2	121	20	6	6	65	1.40
15794533--15794559	5	5.4	5	100	0	54	40	40	18	0	1.51
15797034--15797079	11	4.2	11	78	10	58	52	8	0	39	1.33
15802243--15802666	125	3.4	125	86	2	645	29	18	22	29	1.97
15806335--15806374	18	2.2	18	90	0	62	37	7	32	22	1.82
15808184--15808281	51	1.9	51	83	4	126	45	2	24	27	1.64
15808243--15808296	23	2.4	23	79	17	60	44	0	29	25	1.54
15808243--15808297	11	4.8	12	82	8	62	45	0	29	25	1.54
15809306--15809349	21	2.0	22	83	12	56	9	6	15	68	1.38
15811768--15811904	26	5.3	26	78	0	148	25	13	25	35	1.92
15811767--15811904	52	2.7	52	80	2	170	26	13	25	35	1.92
15813896--15813948	19	2.8	19	75	11	56	69	1	0	28	0.99
15813896--15813956	24	2.6	24	78	17	65	68	1	0	29	0.99
15815623--15815723	49	2.1	49	84	0	130	30	27	13	27	1.94
15818373--15818403	4	8.0	4	92	7	55	74	0	0	25	0.82
15818708--15818803	31	3.1	31	93	3	165	45	12	9	32	1.74
15822537--15822632	31	3.1	31	95	3	174	45	13	9	31	1.75
15825306--15825418	43	2.6	43	80	13	142	23	22	27	27	1.99
15826156--15826214	27	2.2	28	85	11	88	69	0	1	28	0.98
15826525--15826564	22	2.0	20	85	14	55	25	2	17	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15830357--15830395	20	2.0	20	85	10	53	20	7	5	66	1.36
15832251--15832298	23	2.1	23	84	0	60	18	27	20	33	1.96
15832238--15832377	73	1.9	73	88	5	212	19	25	21	34	1.96
15832237--15832390	25	6.3	25	71	17	96	18	25	21	34	1.96
15832381--15832447	25	2.7	25	81	4	73	28	26	13	31	1.94
15835184--15835235	9	5.8	9	77	8	52	28	7	3	59	1.43
15835181--15835223	15	2.9	15	82	0	50	32	6	0	60	1.23
15835184--15835245	27	2.3	27	83	5	72	32	6	4	56	1.46
15838212--15838258	22	2.1	22	96	0	85	38	4	23	34	1.74
15858797--15859134	44	7.7	44	71	4	191	28	19	22	28	1.98
15859856--15859900	23	2.0	23	82	8	56	11	13	2	73	1.19
15862319--15862355	19	2.0	18	94	5	65	48	5	16	29	1.68
15864394--15864422	15	1.9	15	100	0	58	68	3	0	27	1.05
15866662--15866741	42	1.9	42	89	0	124	35	27	21	16	1.94
15866623--15866765	43	3.4	42	77	5	137	31	26	20	21	1.98
15866712--15866814	52	2.0	53	84	5	138	27	26	18	28	1.98
15867224--15867274	21	2.4	21	86	0	66	3	41	17	37	1.68
15873633--15873918	101	2.8	101	93	1	466	24	18	26	31	1.97
15873633--15873865	50	4.6	50	76	7	213	24	18	26	30	1.97
15873631--15873916	51	5.7	49	76	9	245	24	18	26	30	1.97
15873928--15874139	43	5.0	43	80	8	256	22	17	25	33	1.96
15873924--15874139	85	2.6	85	95	0	389	22	18	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15875812--15875921	7	14.0	7	80	16	94	27	0	21	50	1.49
15875819--15876482	9	77.2	9	75	11	551	33	1	18	46	1.57
15875875--15876445	149	3.9	147	82	8	648	34	0	18	46	1.56
15876655--15876723	9	7.9	9	80	6	79	31	0	18	49	1.48
15876399--15876924	268	2.0	264	88	7	793	38	1	13	46	1.54
15876869--15876902	17	1.9	18	88	5	52	55	0	5	38	1.24
15876877--15876919	15	2.9	15	89	0	59	58	0	4	37	1.19
15876922--15876987	23	2.8	23	93	2	105	37	1	19	40	1.61
15876981--15877005	12	2.1	12	100	0	50	40	0	8	52	1.31
15877002--15877090	43	2.0	47	84	8	123	55	1	2	41	1.20
15878662--15878686	13	1.9	13	100	0	50	24	12	24	40	1.88
15898464--15898648	43	4.3	42	80	8	162	31	20	23	25	1.98
15901458--15902197	47	15.6	47	94	2	1207	32	8	29	29	1.87
15901458--15902197	96	7.8	94	92	4	1207	32	8	29	29	1.87
15909256--15909496	25	9.2	25	70	19	127	38	0	18	42	1.56
15909256--15909601	9	38.6	9	67	17	159	35	1	17	44	1.60
15909325--15909376	19	2.8	19	85	2	70	32	1	19	46	1.61
15909322--15909493	46	3.7	46	69	16	129	37	1	18	43	1.57
15909309--15909526	16	13.8	16	70	18	109	35	0	17	45	1.55
15909414--15909601	79	2.3	80	79	6	193	34	2	18	45	1.63
15911239--15911681	173	2.6	173	94	0	771	30	11	35	22	1.90
15911886--15912416	261	2.0	261	95	0	945	34	20	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15912278--15912517	115	2.1	115	94	1	417	32	20	19	27	1.97
15912974--15913040	14	4.8	13	74	18	55	46	31	2	19	1.65
15912979--15913039	21	2.9	21	78	9	70	45	32	3	18	1.65
15913171--15913220	20	2.5	21	83	6	68	48	38	0	14	1.44
15914007--15914141	72	1.9	72	84	4	182	27	25	22	24	2.00
15914006--15914182	72	2.4	72	78	6	178	29	25	21	23	1.99
15917253--15917309	25	2.3	25	87	0	78	21	38	28	12	1.89
15917545--15917579	18	1.9	18	88	11	54	45	0	14	40	1.45
15920248--15920289	22	1.9	22	85	0	57	26	7	7	59	1.50
15924954--15925025	9	7.7	9	75	14	56	27	2	2	66	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196