genome.fa.s25.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  100  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29792425--29792466	18	2.2	20	80	16	54	28	4	14	52	1.62
29800727--29800787	26	2.3	26	88	0	86	40	6	27	24	1.80
29802659--29802701	22	2.0	22	85	0	59	11	18	25	44	1.84
29802889--29803114	43	5.3	43	75	5	217	31	30	15	22	1.95
29802850--29803114	86	3.1	86	83	2	232	29	29	16	24	1.97
29802889--29803114	86	2.7	85	86	2	303	31	30	15	22	1.95
29803467--29803579	21	5.4	21	84	0	118	5	42	16	35	1.71
29803555--29803690	66	2.1	66	84	5	177	11	26	19	42	1.85
29808931--29809099	9	20.0	9	64	21	71	28	2	20	48	1.62
29808953--29809039	16	5.8	16	70	17	69	29	1	19	49	1.56
29808991--29809099	25	4.3	25	72	15	82	30	1	19	48	1.59
29809156--29809211	27	2.1	27	100	0	112	48	3	7	41	1.48
29809183--29809406	121	1.9	121	95	1	405	45	6	7	40	1.59
29809191--29809437	121	2.0	119	85	7	329	45	6	6	41	1.55
29809432--29809521	18	4.9	18	79	14	103	42	0	12	45	1.41
29809438--29809530	17	4.6	21	70	24	76	41	0	12	45	1.42
29809431--29809521	39	2.4	37	85	8	123	42	0	12	45	1.41
29809587--29809617	13	2.4	13	94	0	53	41	0	12	45	1.42
29809652--29809684	10	3.1	11	86	8	50	36	21	9	33	1.85
29813237--29813344	7	15.0	7	72	12	67	33	45	0	20	1.58
29813238--29813287	22	2.3	22	85	0	73	32	46	2	20	1.62
29813239--29813341	29	3.6	29	84	2	109	32	46	0	20	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29813238--29813312	22	3.4	21	77	12	71	30	48	1	20	1.58
29813282--29813324	22	2.0	22	95	0	77	32	48	0	18	1.48
29813282--29813341	22	2.7	22	84	5	59	31	48	0	20	1.50
29814869--29814893	13	1.9	13	100	0	50	52	8	0	40	1.31
29815405--29815642	41	5.8	41	86	3	309	31	26	22	19	1.98
29815405--29815642	81	2.9	82	85	2	309	31	26	22	19	1.98
29815405--29815638	122	1.9	123	85	2	328	32	26	21	20	1.98
29815691--29815801	39	2.8	39	81	4	127	24	20	18	36	1.94
29815738--29815813	39	1.9	39	86	0	107	21	22	19	36	1.95
29815818--29815843	12	2.2	12	100	0	52	46	23	15	15	1.83
29817860--29817930	31	2.3	31	90	4	108	23	28	8	39	1.84
29818992--29819016	9	2.8	9	100	0	50	24	24	16	36	1.94
29823909--29823992	26	3.1	27	76	8	82	35	4	1	58	1.27
29823945--29824002	28	2.1	28	83	6	73	43	3	0	53	1.17
29825723--29825792	30	2.4	29	79	11	81	31	1	4	62	1.23
29828014--29828091	29	2.7	28	84	11	104	25	15	30	28	1.96
29828044--29828371	174	1.9	175	92	1	561	30	14	24	31	1.94
29834333--29834447	45	2.6	44	80	6	124	40	8	23	26	1.83
29836100--29836228	51	2.5	51	87	3	179	26	15	29	28	1.96
29842895--29842933	20	2.0	20	85	9	55	33	0	2	64	1.08
29844788--29844835	9	5.2	9	77	22	55	41	2	2	54	1.24
29844788--29844837	20	2.7	18	80	20	59	40	4	2	54	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29845852--29845905	29	1.9	28	88	7	83	24	14	20	40	1.90
29848514--29848554	21	2.0	21	90	0	64	29	12	26	31	1.92
29853351--29853429	40	2.0	41	89	2	124	18	26	17	36	1.94
29853371--29853428	19	2.9	20	69	5	55	17	29	17	36	1.92
29860648--29860866	41	5.4	41	82	3	239	19	29	16	33	1.94
29860652--29860852	81	2.5	80	78	4	215	20	29	16	33	1.94
29863562--29863613	25	2.0	25	82	10	61	17	13	11	57	1.64
29870408--29870466	24	2.4	25	77	8	68	52	3	6	37	1.45
29874442--29874491	24	2.1	24	88	0	73	30	44	12	14	1.81
29876832--29876898	25	2.7	25	83	0	80	22	20	23	32	1.98
29876840--29876912	25	2.9	25	80	8	85	23	21	24	30	1.99
29877044--29877076	17	1.9	17	93	0	57	48	12	0	39	1.40
29881767--29881831	32	2.0	32	96	0	121	38	26	6	29	1.80
29888655--29889093	27	16.3	27	86	0	502	42	20	17	19	1.90
29892495--29892669	51	3.5	49	84	5	217	23	17	28	30	1.97
29895784--29896006	75	3.0	73	89	4	329	33	11	8	47	1.69
29896641--29896678	20	1.9	20	89	10	60	36	0	5	57	1.21
29902162--29902215	25	2.3	25	75	18	62	53	5	3	37	1.42
29927621--29927748	39	3.3	37	86	6	148	25	21	28	25	1.99
29927614--29927785	78	2.2	76	80	7	186	27	19	27	25	1.99
29935145--29935315	39	4.3	39	85	6	211	25	21	28	25	1.99
29935092--29935315	79	2.8	79	82	7	231	25	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29935172--29935348	79	2.2	80	82	4	200	25	21	28	24	1.99
29936696--29936863	67	2.5	67	88	3	232	35	19	23	22	1.96
29936696--29936883	67	2.8	67	86	3	218	34	18	25	21	1.96
29973116--29973168	24	2.2	24	79	0	61	20	13	18	47	1.82
29980711--29980758	26	1.9	24	91	8	78	41	8	20	29	1.81
29991449--29991787	25	14.4	24	75	16	259	19	24	17	39	1.92
29991449--29991791	47	7.3	47	81	9	346	19	24	16	39	1.92
29991449--29991701	72	3.5	71	79	11	266	19	23	17	39	1.92
30011457--30011499	15	2.9	15	86	6	52	72	4	6	16	1.24
30012308--30012346	18	2.2	18	85	0	51	7	41	0	51	1.31
30019825--30019849	12	2.1	12	100	0	50	40	0	28	32	1.57
30023585--30023613	15	1.9	15	100	0	58	37	27	13	20	1.91
30036453--30036497	23	2.0	23	86	0	63	44	17	6	31	1.75
30043342--30043481	50	2.8	50	82	4	158	22	15	27	34	1.94
30048952--30049037	45	1.9	45	85	0	118	26	18	23	31	1.97
30067327--30067603	51	5.3	51	90	6	437	33	15	22	27	1.95
30067327--30067603	109	2.6	102	92	4	437	33	15	22	27	1.95
30077236--30077273	19	1.9	19	89	5	58	52	2	5	39	1.38
30077579--30077636	28	2.1	28	81	12	66	53	5	0	41	1.23
30077578--30077639	29	2.2	27	78	16	63	54	4	0	40	1.22
30078648--30078687	20	2.0	20	85	9	55	7	15	2	75	1.14
30078965--30079003	17	2.2	18	86	13	55	5	7	35	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30084429--30084462	16	2.1	17	88	5	52	61	0	0	38	0.96
30087499--30087564	28	2.4	28	86	0	96	33	10	31	24	1.89
30093033--30093066	14	2.3	15	90	5	52	50	14	0	35	1.44
30093259--30093295	18	2.1	18	89	0	56	51	8	8	32	1.61
30102336--30102376	14	2.6	16	85	14	59	73	12	0	14	1.11
30102368--30102459	21	4.0	23	68	12	64	73	2	15	8	1.16
30104608--30104957	49	7.1	48	68	11	192	32	23	20	23	1.98
30104482--30105095	97	6.2	98	85	3	732	32	22	21	23	1.98
30104489--30105157	50	13.5	49	67	8	244	32	22	20	24	1.98
30104457--30105161	100	7.1	100	84	4	786	32	22	20	24	1.98
30106687--30106721	17	1.9	19	88	11	56	25	0	2	71	1.00
30123048--30123166	37	3.2	37	76	0	130	40	31	10	18	1.84
30127725--30127767	21	2.0	21	90	0	68	53	11	11	23	1.69
30128081--30128167	22	3.9	22	70	15	72	39	11	12	36	1.80
30128628--30128662	18	1.9	18	94	0	61	62	5	0	31	1.18
30129737--30130137	114	3.5	116	79	6	390	32	18	21	27	1.97
30130081--30130226	76	1.9	75	80	1	166	32	17	22	28	1.96
30129958--30130332	189	2.0	189	84	3	486	32	17	23	27	1.96
30130749--30130816	25	2.7	25	86	0	64	26	1	19	52	1.54
30130864--30130909	21	2.1	22	84	4	58	19	2	43	34	1.63
30131033--30131070	15	2.6	15	87	4	51	28	0	26	44	1.54
30131094--30131156	21	3.0	21	81	4	72	31	1	33	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30138087--30138137	21	2.4	21	86	0	66	31	15	49	3	1.63
30138573--30138676	42	2.5	42	84	3	129	36	21	15	26	1.93
30142472--30142509	10	3.9	10	86	6	51	36	0	13	50	1.42
30142784--30142853	25	2.7	26	78	10	81	28	18	24	28	1.98
30142722--30143026	158	1.9	158	80	6	350	30	15	22	31	1.95
30158149--30158257	43	2.5	43	86	0	137	28	29	19	22	1.98
30158293--30158379	43	2.0	43	93	0	129	29	31	19	19	1.97
30159284--30159700	23	18.3	23	70	14	242	41	24	5	28	1.78
30159284--30159487	91	2.2	90	82	6	259	41	24	5	28	1.78
30159336--30159592	114	2.3	114	93	0	442	41	24	5	29	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196