genome.fa.s25.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  177  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51641778--51641832	26	2.1	26	83	6	67	29	7	23	40	1.81
51655441--51655478	18	2.0	20	85	10	53	31	5	2	60	1.33
51655570--51655723	77	2.0	77	100	0	308	27	12	5	54	1.59
51655959--51656326	83	4.6	81	77	8	337	39	8	12	38	1.75
51655961--51656335	156	2.4	158	80	8	388	39	8	13	38	1.76
51656434--51656585	76	2.0	76	98	0	295	32	25	12	30	1.92
51656898--51657018	60	2.0	60	100	0	242	27	26	13	33	1.93
51660247--51660273	3	9.0	3	100	0	54	33	0	0	66	0.92
51660490--51661117	78	8.1	79	83	7	698	39	13	9	37	1.78
51660493--51661115	159	4.0	159	85	6	744	39	13	9	37	1.78
51660938--51661069	70	1.9	69	90	1	210	41	14	9	34	1.79
51668263--51668304	20	2.0	21	86	13	61	54	19	2	23	1.55
51668392--51668457	32	2.1	32	91	5	107	37	7	6	48	1.56
51670830--51671017	36	4.9	36	84	12	241	29	19	14	37	1.91
51670899--51671053	46	3.6	46	78	16	168	29	20	13	36	1.91
51670863--51671053	82	2.3	82	93	0	319	29	20	13	37	1.90
51670784--51671017	118	2.0	115	90	2	369	29	20	14	36	1.92
51680638--51680719	22	4.1	20	75	14	71	34	0	8	57	1.29
51680700--51680754	27	2.0	28	82	13	69	32	0	1	65	1.03
51680732--51680811	36	2.2	36	80	10	92	35	5	1	58	1.28
51682762--51682852	19	4.8	19	90	0	146	37	14	9	38	1.79
51682739--51682852	38	2.9	38	86	5	147	39	14	8	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51683534--51683586	27	2.0	27	84	0	70	54	0	0	45	0.99
51685549--51685617	3	22.7	3	79	2	75	26	2	5	65	1.29
51685868--51685904	16	2.2	18	85	9	51	32	5	2	59	1.34
51689833--51689870	17	2.2	17	90	0	58	84	5	2	7	0.86
51690843--51690895	13	3.9	14	82	7	65	71	0	13	15	1.14
51690843--51690895	7	7.9	7	85	8	65	71	0	13	15	1.14
51690843--51690895	20	2.7	20	87	0	79	71	0	13	15	1.14
51692135--51692221	44	2.0	44	86	2	120	33	18	20	27	1.96
51692177--51692354	98	1.8	98	90	2	286	33	16	19	30	1.94
51692319--51692870	44	12.7	44	71	11	257	29	20	22	27	1.98
51692487--51692993	44	11.6	45	70	11	248	28	20	22	27	1.99
51692363--51692657	87	3.4	85	73	11	238	30	21	21	27	1.98
51692492--51692677	87	2.1	87	80	8	198	30	22	20	26	1.98
51692363--51692984	218	2.8	217	91	1	967	29	20	22	27	1.98
51692541--51692701	87	1.9	87	80	7	193	32	20	20	26	1.97
51694511--51694579	3	22.7	3	82	2	66	24	2	7	65	1.32
51694827--51694863	16	2.2	18	85	9	51	32	5	2	59	1.34
51700379--51700423	24	1.9	23	90	4	72	60	0	2	37	1.09
51700791--51700848	22	2.6	22	74	15	57	46	8	8	36	1.65
51700895--51700930	3	11.7	3	94	5	63	69	0	0	30	0.89
51700864--51700930	10	7.0	10	81	8	61	70	0	4	25	1.06
51700869--51700972	45	2.3	44	78	15	108	68	0	6	24	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51701605--51701649	16	2.8	16	79	0	54	77	4	4	13	1.07
51702404--51702559	50	3.1	50	88	3	199	27	17	22	32	1.97
51702569--51703078	44	11.8	44	71	10	318	26	22	21	29	1.99
51702617--51703028	85	4.8	84	71	12	282	27	22	21	29	1.99
51702555--51703075	129	4.0	129	92	0	835	27	21	21	29	1.99
51715249--51715293	24	1.9	23	90	4	72	60	0	2	37	1.09
51715659--51715715	22	2.5	22	73	15	55	45	8	8	36	1.66
51715728--51715798	10	7.4	10	85	4	85	70	0	4	25	1.05
51715759--51715797	3	12.7	3	94	5	69	69	0	0	30	0.89
51715730--51715836	48	2.2	49	81	14	118	68	0	6	24	1.19
51716470--51716514	16	2.8	16	79	0	54	77	4	4	13	1.07
51720610--51720642	6	5.5	6	100	0	66	54	0	0	45	0.99
51720606--51720642	18	2.1	18	90	5	58	56	0	0	43	0.99
51722298--51722427	40	3.3	40	78	9	124	34	24	16	23	1.95
51738442--51738510	34	2.0	34	100	0	138	31	20	11	36	1.88
51740678--51740709	12	2.5	13	90	10	57	59	0	40	0	0.97
51741319--51741365	24	2.0	23	84	12	60	51	4	14	29	1.62
51742440--51742464	2	12.5	2	100	0	50	48	0	0	52	1.00
51743572--51743631	22	2.7	21	89	5	84	38	15	23	23	1.92
51744770--51744909	70	2.0	70	88	0	208	36	19	15	29	1.92
51745525--51745576	26	2.0	27	88	3	79	63	3	1	30	1.23
51746474--51746512	16	2.5	15	88	12	60	76	0	10	12	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51746474--51746509	17	2.2	17	95	5	65	77	0	11	11	0.99
51747050--51747101	21	2.5	22	82	17	74	26	7	34	30	1.85
51747265--51747398	18	7.9	18	69	17	90	57	1	0	40	1.13
51747316--51747371	15	4.0	15	73	17	57	55	0	0	44	0.99
51747321--51747519	59	3.3	58	72	14	199	53	3	1	41	1.24
51747299--51747541	120	2.0	120	97	0	459	51	4	1	43	1.31
51747349--51747541	61	3.2	60	71	12	187	50	4	1	43	1.32
51750602--51750637	18	2.0	18	88	0	54	44	0	55	0	0.99
51750602--51750639	13	3.0	13	84	7	51	44	0	55	0	0.99
51752298--51752322	13	1.9	13	100	0	50	40	48	0	12	1.40
51752303--51752377	38	1.9	39	89	2	116	52	25	2	20	1.60
51758208--51758254	11	4.3	11	86	7	60	25	27	0	46	1.53
51758208--51758251	10	4.1	10	83	11	52	25	29	0	45	1.54
51760053--51760095	18	2.4	18	88	0	59	20	25	6	46	1.76
51760516--51760636	49	2.5	49	94	0	206	45	2	7	44	1.45
51763733--51764017	124	2.3	124	92	1	482	28	20	18	31	1.97
51764197--51764237	21	2.0	21	90	0	64	48	34	0	17	1.47
51769210--51769247	3	12.7	3	100	0	76	0	31	0	68	0.90
51787260--51787299	9	4.4	9	84	12	55	27	10	17	45	1.80
51790658--51790694	17	2.1	18	90	5	58	43	5	5	45	1.49
51797284--51798211	100	9.3	100	86	0	1228	33	21	20	24	1.97
51797284--51798211	50	18.5	50	71	4	598	33	21	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51799858--51799894	17	2.1	18	90	5	58	43	5	5	45	1.49
51805624--51805648	8	3.1	8	100	0	50	0	0	16	84	0.63
51807116--51807177	31	2.0	31	100	0	124	35	9	16	38	1.81
51808430--51808503	29	2.5	29	82	4	85	25	14	13	45	1.82
51809030--51809097	29	2.3	29	84	5	82	48	14	14	22	1.80
51820757--51820793	17	2.2	16	95	4	65	16	0	18	64	1.29
51821331--51821379	24	2.0	24	96	0	89	51	2	0	46	1.12
51822199--51822228	6	5.0	6	100	0	60	83	0	16	0	0.65
51826013--51826227	36	5.1	45	74	20	232	35	13	20	30	1.91
51826013--51826246	82	2.9	82	94	1	393	35	12	21	29	1.91
51829631--51829706	23	3.3	23	96	0	143	21	21	26	31	1.98
51836613--51836832	36	5.3	45	76	20	246	35	13	21	28	1.92
51836601--51836832	82	2.9	82	94	1	389	36	13	21	28	1.91
51840075--51840108	16	2.1	16	88	0	50	50	14	17	17	1.79
51843864--51843898	17	2.1	17	89	5	54	31	8	2	57	1.44
51844775--51844813	20	2.0	20	90	5	62	64	0	0	35	0.94
51845144--51845210	18	3.4	18	76	21	71	41	0	2	55	1.15
51845148--51845220	24	3.4	22	75	21	82	43	0	4	52	1.20
51845144--51845252	41	2.6	42	86	2	157	41	1	3	53	1.29
51852661--51852757	40	2.5	40	80	6	112	29	25	17	26	1.97
51871348--51871381	17	2.0	17	88	0	50	44	2	0	52	1.16
51872153--51872208	20	2.9	19	79	7	69	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51872227--51872272	21	2.1	23	84	15	62	69	0	6	23	1.11
51872235--51872282	20	2.4	19	76	10	51	62	0	8	29	1.24
51878525--51878562	17	2.2	17	86	9	51	36	2	2	57	1.26
51878525--51878570	18	2.6	18	83	10	51	36	2	2	58	1.22
51885321--51885365	23	2.0	23	90	0	72	42	22	6	28	1.79
51888181--51888239	3	19.7	3	100	0	118	33	0	0	66	0.92
51896514--51896555	17	2.6	16	88	7	66	38	0	0	61	0.96
51904366--51904648	33	8.6	33	69	23	163	33	27	19	19	1.96
51904499--51904548	26	1.9	26	100	0	100	28	32	24	16	1.96
51904321--51904653	101	3.3	102	93	1	569	32	27	18	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196