genome.fa.s25.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  183  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53724006--53724044	20	2.0	20	85	10	53	56	5	0	38	1.22
53724028--53724082	18	3.2	18	73	14	53	50	1	0	47	1.11
53740779--53740835	29	1.9	30	92	3	98	19	43	0	36	1.51
53741092--53741123	16	1.9	17	93	6	57	31	18	0	50	1.48
53744268--53744301	15	2.1	17	89	10	54	58	2	0	38	1.13
53744257--53744304	22	2.1	23	84	3	62	62	2	0	35	1.07
53749563--53749606	3	14.7	3	100	0	88	0	31	0	68	0.90
53751223--53751280	18	3.4	18	81	13	77	43	0	5	51	1.24
53751203--53751280	33	2.3	36	86	8	110	43	1	3	51	1.28
53751394--53751443	8	6.1	8	80	15	50	48	2	0	50	1.12
53751740--53751764	6	4.2	6	100	0	50	16	16	32	36	1.90
53754535--53754606	21	3.4	21	90	0	108	30	6	27	34	1.83
53763761--53763787	14	1.9	14	100	0	54	33	0	0	66	0.92
53772958--53773071	31	3.8	30	71	17	101	47	10	17	24	1.79
53786846--53786938	25	3.7	25	73	13	84	19	27	21	31	1.97
53786918--53787015	25	3.9	25	68	10	74	23	28	19	28	1.98
53788024--53788062	11	3.4	11	80	13	51	51	0	2	46	1.14
53788042--53788079	14	2.4	17	87	12	55	47	0	0	52	1.00
53791411--53791538	25	5.3	25	76	14	151	50	4	7	37	1.52
53791404--53791538	48	2.8	48	97	0	261	50	5	7	37	1.53
53791404--53791521	23	5.0	23	76	13	123	50	5	8	34	1.57
53791873--53791908	16	2.2	16	100	0	72	27	5	8	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53794774--53794982	92	2.3	91	85	5	269	45	3	3	46	1.39
53794987--53795599	54	10.4	54	68	22	269	42	2	4	49	1.36
53794998--53795288	120	2.4	119	92	4	478	42	2	4	49	1.38
53795132--53795174	15	2.8	16	79	10	54	44	0	2	53	1.13
53795102--53795461	174	2.1	174	98	1	704	43	1	4	50	1.32
53795224--53795329	18	6.0	19	64	28	56	43	0	1	54	1.11
53794998--53795581	294	2.0	294	94	2	1039	42	2	4	49	1.36
53795276--53795584	120	2.6	120	98	0	600	42	1	4	50	1.34
53795546--53795587	15	2.7	16	82	14	52	45	0	2	52	1.13
53795537--53795578	15	2.9	15	82	10	52	47	0	0	52	1.00
53795521--53795825	152	2.0	156	92	3	510	47	4	3	43	1.43
53795955--53795990	16	2.2	16	100	0	72	38	36	0	25	1.56
53796010--53796039	7	4.3	7	100	0	60	33	0	26	40	1.57
53807745--53807797	24	2.2	24	89	0	79	33	1	9	54	1.43
53811399--53811444	17	2.6	18	86	10	60	69	0	6	23	1.11
53816351--53816419	35	1.9	36	94	2	122	26	4	17	52	1.63
53817756--53817795	20	2.0	20	90	0	62	50	12	10	27	1.72
53817744--53817810	34	1.9	35	87	3	100	49	13	7	29	1.69
53818726--53819217	223	2.2	218	84	6	605	42	14	16	26	1.87
53818726--53819216	116	4.4	112	80	9	522	41	14	16	26	1.87
53819325--53819935	104	5.4	115	81	9	688	31	16	14	38	1.88
53819688--53819936	122	2.1	119	84	3	320	30	15	12	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53829614--53829668	27	2.0	27	100	0	110	18	14	32	34	1.91
53830746--53830806	29	2.1	30	84	3	79	34	13	6	45	1.69
53836686--53836767	41	2.0	42	87	2	121	35	1	0	63	1.02
53837106--53837165	21	3.0	19	78	7	66	83	3	8	5	0.90
53837062--53837165	19	5.6	18	68	16	52	80	3	6	8	1.00
53837192--53837232	12	3.5	12	83	6	57	63	2	9	24	1.37
53841451--53841990	273	2.0	274	93	1	931	32	21	17	28	1.96
53843993--53844030	20	1.9	20	89	10	60	73	2	0	23	0.95
53845649--53845684	18	2.0	18	100	0	72	50	5	0	44	1.25
53849976--53850024	23	2.0	26	88	11	77	30	20	0	48	1.50
53850182--53850210	12	2.4	12	100	0	58	58	6	0	34	1.25
53850870--53850895	11	2.4	11	100	0	52	0	42	7	50	1.31
53850951--53850990	5	7.6	5	83	10	53	60	0	0	40	0.97
53850951--53850991	16	2.6	16	92	0	73	60	0	0	39	0.96
53850956--53850985	8	3.8	8	90	0	51	60	0	0	40	0.97
53853181--53853336	50	3.1	50	92	0	249	26	20	29	23	1.99
53853200--53853382	50	3.7	49	83	4	174	28	20	26	24	1.99
53855639--53855682	11	3.8	11	82	11	61	63	0	0	36	0.95
53855645--53855687	12	3.4	13	78	15	54	58	0	0	41	0.98
53855641--53855687	24	1.9	25	95	4	87	59	0	0	40	0.97
53863941--53863981	21	2.0	21	85	0	55	34	2	26	36	1.70
53864575--53864671	23	4.1	24	76	7	83	21	21	18	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53864555--53864643	45	1.9	47	84	4	119	20	20	19	40	1.92
53864583--53864671	25	3.7	23	77	7	70	20	21	19	39	1.93
53864630--53864677	25	1.9	25	95	0	87	18	25	20	35	1.95
53867056--53867097	14	2.9	14	76	16	50	38	0	4	57	1.20
53867754--53867794	14	2.9	15	79	13	52	53	0	0	46	1.00
53880787--53880828	21	2.0	21	100	0	84	28	4	19	47	1.69
53882111--53882161	22	2.4	22	86	3	68	68	0	0	31	0.90
53882124--53882156	16	2.1	16	94	0	57	72	0	0	27	0.85
53885744--53885785	19	2.0	22	86	13	63	35	2	0	61	1.09
53886746--53886773	2	14.0	2	100	0	56	0	50	0	50	1.00
53887299--53887358	29	2.1	29	100	0	120	31	11	6	50	1.65
53887389--53887413	12	2.1	12	100	0	50	8	16	16	60	1.58
53889839--53889880	21	2.0	22	85	4	59	40	2	9	47	1.49
53899748--53899798	26	2.0	26	88	0	75	19	23	21	35	1.96
53904489--53904525	19	1.9	19	94	0	65	24	35	10	29	1.89
53904520--53904565	22	2.1	22	87	0	65	15	23	19	41	1.89
53914363--53914581	50	4.3	50	83	3	240	22	28	21	27	1.99
53914363--53914581	100	2.1	103	84	5	273	22	28	21	27	1.99
53917495--53917609	41	2.8	41	97	2	214	29	24	20	26	1.99
53925031--53925145	41	2.8	41	97	2	214	29	24	20	26	1.99
53938791--53938839	6	7.8	6	93	6	80	46	16	16	20	1.83
53938817--53938968	45	3.4	45	90	0	241	42	21	17	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53940878--53941203	46	7.6	45	86	8	361	28	21	14	34	1.93
53941060--53941167	36	3.0	36	97	0	198	29	19	12	37	1.89
53947570--53947607	6	6.3	6	84	9	51	15	2	0	81	0.80
53947561--53947604	20	2.2	20	88	8	63	15	2	0	81	0.78
53947812--53948151	109	3.1	108	88	2	486	33	16	16	32	1.92
53954562--53954586	12	2.1	12	100	0	50	60	8	16	16	1.58
53960264--53960335	37	1.9	37	86	5	101	55	1	9	33	1.41
53963403--53963439	10	3.6	10	88	3	56	70	0	29	0	0.88
53963600--53963699	40	2.4	41	83	8	123	34	3	12	51	1.54
53968927--53970260	156	8.5	155	74	14	1069	30	10	7	51	1.64
53969315--53970277	320	3.0	319	93	1	1612	30	11	7	51	1.65
53969354--53970280	160	5.8	154	72	15	631	29	11	7	51	1.65
53970638--53970741	4	25.8	4	73	23	51	0	29	0	70	0.88
53970632--53970741	18	5.6	21	77	9	83	0	30	0	70	0.88
53970632--53970741	10	11.3	10	69	19	72	0	30	0	70	0.88
53970607--53970742	38	3.6	38	79	7	152	0	31	0	67	0.96
53970674--53970752	24	3.3	23	71	11	70	0	35	0	64	0.94
53979361--53979404	15	2.9	15	86	0	52	13	68	9	9	1.40
53991919--53991953	12	2.9	12	95	0	61	34	17	8	40	1.80
53991932--53991989	30	1.9	30	89	0	89	22	13	10	53	1.70
53991958--53992013	26	2.2	25	87	6	85	23	14	8	53	1.68
53991959--53992013	12	4.4	12	84	8	74	23	14	9	52	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54000283--54000317	12	2.9	12	95	0	61	34	17	8	40	1.80
54000296--54000352	29	2.0	29	89	0	87	22	14	10	52	1.71
54000321--54000376	26	2.2	25	87	6	85	23	14	8	53	1.68
54000322--54000376	12	4.4	12	84	8	74	23	14	9	52	1.70
54009783--54009968	22	9.0	21	73	15	163	32	0	12	55	1.37
54009807--54009863	19	2.9	19	86	2	78	33	0	14	52	1.41
54009783--54009968	41	4.5	40	74	17	175	32	0	12	55	1.37
54010065--54010122	22	2.9	19	71	14	53	34	1	12	51	1.49
54009917--54010143	96	2.3	98	90	4	368	32	1	13	52	1.48
54009917--54010139	49	4.5	49	84	9	310	32	1	13	52	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196