genome.fa.s25.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  116  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35110387--35110418	7	4.6	7	96	0	55	25	0	12	62	1.30
35110390--35110424	14	2.5	13	86	13	52	25	0	14	60	1.35
35111050--35111089	18	2.2	18	95	0	71	22	30	5	42	1.75
35111522--35111703	71	2.6	71	97	1	339	40	0	13	46	1.43
35111514--35111945	25	17.9	25	70	16	204	40	0	14	45	1.44
35111590--35111824	121	1.9	121	97	1	445	40	0	13	45	1.44
35111711--35111895	71	2.6	71	96	1	336	40	0	12	47	1.41
35111514--35111948	192	2.3	192	96	0	800	40	0	14	45	1.44
35111947--35112416	23	19.7	23	82	9	521	44	21	6	27	1.76
35111947--35112416	46	10.3	46	85	8	604	44	21	6	27	1.76
35111947--35112416	69	6.9	69	84	9	604	44	21	6	27	1.76
35112065--35112124	30	2.0	30	96	0	111	48	26	5	20	1.70
35112216--35112283	34	2.0	34	100	0	136	41	23	5	29	1.78
35112147--35112416	103	2.7	103	88	6	382	45	22	5	27	1.73
35115667--35115906	125	1.9	124	90	4	385	32	22	16	28	1.96
35115933--35115959	7	3.9	7	100	0	54	44	40	0	14	1.46
35116874--35116898	13	1.9	13	100	0	50	28	8	16	48	1.74
35127954--35128046	43	2.2	42	80	3	107	32	19	15	33	1.92
35135648--35135691	23	1.9	23	100	0	88	45	9	22	22	1.80
35141035--35141094	30	2.0	31	86	3	86	40	0	40	20	1.52
35142211--35142264	19	2.8	21	75	16	62	40	0	0	59	0.98
35142781--35142805	6	4.2	6	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35144667--35144716	26	2.0	24	84	7	64	46	0	0	54	1.00
35147349--35147412	24	2.7	24	87	0	83	48	10	4	35	1.59
35155739--35155776	16	2.3	17	95	4	69	21	63	5	10	1.46
35156438--35156484	23	2.0	23	91	0	76	40	2	23	34	1.67
35159415--35159457	6	7.0	6	81	5	50	16	4	13	65	1.43
35196116--35196183	32	2.2	32	84	7	86	36	17	13	32	1.89
35196496--35196562	32	2.1	32	83	5	82	62	4	1	31	1.24
35196525--35196634	27	4.2	26	71	21	88	61	0	2	34	1.16
35196525--35196634	28	4.2	25	73	19	93	61	0	2	34	1.16
35196568--35196645	11	7.4	11	74	20	60	58	0	3	37	1.16
35196589--35196620	16	2.0	16	93	0	55	65	0	0	34	0.93
35196517--35196655	40	3.5	39	78	14	149	60	0	2	35	1.17
35198651--35198675	2	12.5	2	100	0	50	48	0	0	52	1.00
35199781--35199825	21	2.1	21	88	8	65	53	35	0	11	1.37
35200001--35200050	19	2.5	20	83	6	66	16	4	34	46	1.65
35200165--35200192	13	2.2	13	100	0	56	28	28	0	42	1.56
35202439--35202463	2	12.5	2	100	0	50	48	0	0	52	1.00
35218738--35218801	26	2.4	27	94	5	112	40	10	0	48	1.38
35218852--35218911	27	2.2	27	81	0	66	31	26	26	15	1.95
35218861--35218912	27	1.9	27	92	0	86	30	23	30	15	1.95
35219020--35219081	19	3.3	19	77	4	81	46	0	12	40	1.42
35219014--35219073	18	3.3	18	76	4	75	48	0	13	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35219634--35219685	27	1.9	27	96	0	95	13	32	23	30	1.93
35219636--35219694	27	2.2	27	87	0	82	13	28	27	30	1.94
35219748--35219812	27	2.4	28	92	2	114	50	0	9	40	1.34
35222688--35222749	3	20.7	3	100	0	124	67	0	0	32	0.91
35226762--35226808	24	2.0	24	86	0	67	21	27	14	36	1.93
35229312--35229341	8	3.8	8	100	0	60	53	13	0	33	1.40
35229703--35229826	22	5.9	21	72	16	96	31	30	0	37	1.63
35229856--35229920	29	2.3	27	80	15	76	41	1	1	55	1.18
35229863--35229921	31	2.0	29	90	6	91	40	0	1	57	1.09
35230019--35230074	24	2.3	23	77	19	60	28	0	5	66	1.14
35232030--35232080	25	2.0	25	100	0	102	23	27	33	15	1.95
35232217--35232291	23	3.2	24	81	5	91	45	26	0	28	1.54
35232274--35233264	61	16.5	60	81	9	1037	48	23	0	28	1.52
35232344--35232395	23	2.3	23	96	0	95	48	25	0	26	1.52
35232237--35233279	117	8.6	116	84	9	1221	48	23	0	28	1.52
35232457--35232512	23	2.4	23	96	0	103	48	26	0	25	1.52
35232672--35232750	28	3.0	24	89	10	86	48	22	0	29	1.51
35232669--35232757	28	3.4	23	69	26	70	48	25	0	25	1.52
35232926--35233009	28	3.1	24	88	9	78	47	27	0	25	1.52
35233125--35233188	28	2.6	23	78	21	83	46	25	0	28	1.53
35232262--35233279	33	33.5	31	81	12	1022	48	23	0	27	1.52
35233112--35233300	61	3.3	55	77	22	185	47	23	0	28	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35236466--35236747	124	2.3	125	82	7	340	32	23	14	28	1.95
35238620--35238658	13	3.1	13	89	10	55	76	0	2	20	0.90
35240470--35241219	94	8.0	94	85	1	964	28	20	20	31	1.97
35243482--35243551	25	2.8	26	74	8	83	28	21	28	21	1.99
35243560--35243629	25	2.8	25	76	4	70	40	15	24	20	1.91
35243594--35243647	25	2.2	25	86	6	74	42	12	24	20	1.87
35255369--35255410	21	2.0	21	85	0	57	35	2	21	40	1.66
35258597--35258735	25	5.5	25	73	13	99	19	23	19	38	1.94
35258783--35258844	25	2.4	25	76	7	63	24	25	19	30	1.98
35263772--35263805	12	2.8	13	86	13	54	50	0	0	50	1.00
35263779--35263843	22	2.9	22	78	14	71	49	0	4	46	1.22
35263775--35263818	12	3.9	12	80	19	51	50	0	2	47	1.13
35264974--35264999	2	13.0	2	100	0	52	50	0	0	50	1.00
35286225--35286267	22	1.9	23	85	4	61	37	6	2	53	1.41
35290801--35290871	15	5.2	15	72	17	57	71	8	5	14	1.28
35290797--35290871	40	1.9	38	91	5	123	70	9	5	14	1.31
35290768--35290890	19	6.4	18	72	17	81	73	6	8	11	1.25
35290791--35290871	39	2.1	40	88	6	123	72	8	4	13	1.24
35293039--35293277	120	2.0	120	92	1	399	33	19	20	25	1.97
35293504--35293898	44	8.7	44	71	13	154	31	19	21	27	1.97
35293737--35293903	88	1.9	88	87	0	244	29	20	22	27	1.98
35293737--35293946	88	2.4	88	81	1	233	31	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35293825--35294440	217	2.8	217	93	0	1054	32	18	20	28	1.96
35295986--35296028	22	1.9	23	85	4	61	37	6	2	53	1.41
35305996--35306061	29	2.3	29	100	0	132	50	16	12	21	1.77
35311419--35311619	106	1.9	106	97	0	384	31	18	19	30	1.96
35312080--35312185	37	2.8	38	77	16	105	50	0	13	35	1.41
35312472--35312528	22	2.6	23	78	18	75	64	3	7	24	1.34
35313240--35313264	13	1.9	13	100	0	50	68	0	8	24	1.16
35314025--35314765	132	5.6	132	85	3	1017	29	26	16	27	1.97
35314012--35314735	88	8.3	88	85	3	840	28	26	16	28	1.97
35326092--35326292	106	1.9	106	97	0	384	31	18	19	30	1.96
35326753--35326858	37	2.8	38	77	16	105	50	0	13	35	1.41
35327144--35327200	22	2.6	23	78	18	75	64	3	7	24	1.34
35327913--35327937	13	1.9	13	100	0	50	68	0	8	24	1.16
35330964--35331065	43	2.3	43	81	5	107	29	18	22	29	1.97
35330957--35331112	44	3.6	44	79	5	156	28	19	21	30	1.98
35339754--35339814	18	3.2	18	65	13	50	14	31	16	37	1.89
35340311--35340346	19	1.9	18	88	5	54	44	2	22	30	1.67
35343552--35343596	5	9.0	5	100	0	90	60	0	0	40	0.97
35348210--35348261	26	2.0	26	88	7	79	34	28	15	21	1.94
35348236--35348452	41	5.3	41	82	7	244	22	22	26	28	1.99
35348857--35348890	14	2.3	15	90	5	52	35	0	29	35	1.58
35348938--35349108	82	2.1	82	87	4	247	26	4	24	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35349872--35349912	15	2.6	16	81	14	50	58	0	0	41	0.98
35350209--35350266	21	2.7	22	78	10	66	29	41	3	25	1.72
35354037--35354084	22	2.0	23	84	11	62	54	2	2	41	1.24
35354096--35354334	43	5.6	43	84	3	261	22	15	29	32	1.95
35355617--35355660	21	2.0	22	86	4	63	36	4	13	45	1.64
35355850--35355894	23	2.0	23	81	0	54	22	0	15	62	1.33
35361062--35361298	43	5.6	43	83	5	252	22	15	29	32	1.95
35361077--35361270	85	2.3	84	83	1	226	22	16	31	29	1.96
35362578--35362621	21	2.0	22	86	4	63	36	4	13	45	1.64
35362805--35362854	23	2.2	23	81	0	55	22	0	16	62	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196