genome.fa.s25.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  123  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37044524--37044577	16	3.1	18	77	15	60	40	0	12	46	1.42
37046564--37046683	44	2.7	44	84	0	177	21	25	23	30	1.99
37046693--37046855	87	1.9	87	93	0	281	23	22	20	33	1.97
37046696--37046833	43	3.2	43	71	13	138	23	23	19	34	1.97
37046780--37047602	131	6.3	131	86	4	890	25	24	19	30	1.98
37049837--37049896	30	2.0	30	100	0	120	30	16	10	43	1.81
37055420--37055473	29	2.0	26	85	10	72	7	16	7	68	1.36
37056766--37056822	25	2.2	26	81	9	62	45	3	0	50	1.18
37059360--37059490	18	7.4	18	73	13	103	5	26	8	59	1.48
37059407--37059470	15	3.9	15	73	23	58	6	25	7	60	1.47
37059363--37059507	69	2.1	70	82	3	175	4	26	8	59	1.48
37059363--37059507	36	4.1	36	80	5	152	4	26	8	59	1.48
37066451--37066479	13	2.2	13	100	0	58	44	13	6	34	1.71
37067807--37067848	15	2.7	16	82	14	52	52	2	0	45	1.13
37067816--37067857	15	2.9	15	82	10	52	52	0	0	47	1.00
37067926--37067977	15	3.6	15	80	12	56	53	1	0	44	1.11
37068046--37068097	15	3.6	15	80	12	56	53	1	0	44	1.11
37068166--37068217	15	3.6	15	80	12	56	53	1	0	44	1.11
37067810--37068342	120	4.4	120	98	0	996	49	5	2	42	1.39
37068390--37068533	47	3.1	46	64	25	106	50	3	2	44	1.30
37068283--37068565	91	3.0	93	81	10	299	48	2	3	45	1.33
37068339--37068525	44	4.1	43	69	17	112	48	2	2	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37068408--37068546	47	3.0	47	68	17	137	49	4	2	43	1.34
37086408--37086441	9	3.9	9	84	7	52	44	0	2	52	1.16
37089972--37090009	18	2.1	18	90	0	58	21	26	10	42	1.85
37091851--37092262	125	3.3	125	89	0	628	30	19	17	32	1.95
37092447--37092487	21	1.9	22	90	5	66	51	36	0	12	1.40
37095417--37095485	31	2.2	31	78	0	75	18	18	31	30	1.96
37097345--37097377	17	2.0	16	94	5	57	42	18	0	39	1.50
37099478--37099670	50	3.8	50	87	0	260	25	21	31	21	1.98
37108409--37108448	14	2.7	15	84	11	55	27	2	12	57	1.48
37117575--37117620	23	2.0	23	95	0	83	26	2	4	67	1.21
37128353--37128415	33	1.9	33	84	12	85	39	0	3	57	1.15
37128595--37128636	18	2.5	17	84	7	50	21	0	7	71	1.09
37135910--37135956	23	2.0	23	100	0	94	34	4	27	34	1.77
37137833--37137985	48	3.2	48	82	4	191	30	20	26	21	1.98
37150878--37150903	10	2.6	10	100	0	52	80	0	7	11	0.89
37151616--37152121	44	11.5	44	73	10	320	30	23	16	29	1.96
37151616--37152114	88	5.6	88	76	9	381	30	24	16	29	1.96
37151708--37152116	133	3.1	132	87	3	538	30	24	16	28	1.97
37151616--37152114	177	2.8	176	84	2	574	30	24	16	29	1.96
37152938--37152985	25	1.9	26	91	8	82	60	10	14	14	1.59
37164315--37164345	16	1.9	16	93	0	53	48	12	6	32	1.67
37167486--37167579	48	2.0	48	83	8	120	39	26	13	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37170001--37170094	48	2.0	48	83	8	120	39	26	13	20	1.90
37172813--37172843	9	3.4	9	95	0	53	41	22	9	25	1.84
37172851--37172913	17	3.5	17	71	12	63	49	14	3	33	1.59
37172842--37172916	37	2.0	37	97	0	141	45	16	4	34	1.66
37172842--37172933	37	2.5	37	89	7	125	46	15	4	33	1.65
37173045--37173118	38	1.9	39	91	2	123	18	4	24	52	1.63
37173103--37173157	13	3.9	13	78	17	56	14	3	41	40	1.63
37173107--37173144	17	2.2	18	90	4	60	10	2	47	39	1.52
37179188--37179225	20	1.9	20	94	0	67	28	23	0	47	1.52
37180642--37180701	26	2.3	26	71	2	68	51	1	0	46	1.10
37185858--37185888	13	2.4	13	100	0	62	29	6	0	64	1.18
37190548--37190591	20	2.2	20	83	4	52	59	6	4	29	1.44
37191432--37191479	22	2.2	22	92	0	78	37	14	16	31	1.89
37192750--37192814	28	2.4	27	75	17	62	64	0	12	23	1.27
37194505--37195299	44	17.8	45	80	3	705	29	20	16	33	1.94
37194505--37195299	89	8.9	89	82	4	726	29	20	16	33	1.94
37194505--37195299	134	5.9	133	79	4	655	29	20	16	33	1.94
37205811--37205851	21	2.0	21	90	9	66	29	7	19	43	1.78
37215831--37215901	9	7.6	9	78	9	61	61	0	1	36	1.05
37215830--37215901	19	3.8	19	75	12	67	62	0	1	36	1.04
37215829--37215939	9	11.4	10	70	21	51	63	1	1	33	1.16
37215829--37215901	29	2.6	28	78	8	76	63	0	1	35	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37217192--37217247	21	2.6	22	77	8	62	14	26	37	21	1.92
37222233--37222271	20	2.0	19	90	5	60	38	20	23	17	1.93
37227057--37227154	37	2.6	38	81	3	117	20	14	35	29	1.92
37228658--37228696	18	2.2	18	86	9	53	51	15	7	25	1.70
37228745--37228804	30	2.0	31	93	3	104	20	41	0	38	1.52
37228772--37229045	126	2.2	126	83	7	326	22	38	0	37	1.60
37230685--37230714	15	2.0	15	100	0	60	40	26	13	20	1.89
37231118--37231260	76	1.9	77	83	5	191	41	18	4	36	1.70
37232690--37232759	34	2.1	34	94	0	122	47	12	12	27	1.78
37240830--37240862	16	2.1	17	88	11	52	51	6	9	33	1.58
37250259--37250293	6	6.0	6	93	6	63	65	0	0	34	0.93
37252292--37252539	27	9.2	27	83	3	268	34	18	22	25	1.96
37252519--37252596	26	3.1	25	78	10	70	26	16	21	34	1.95
37252531--37252598	24	2.8	24	79	4	73	27	14	19	38	1.91
37252682--37252746	27	2.4	27	82	9	80	20	26	23	30	1.98
37252700--37252752	27	2.0	27	81	7	63	22	26	20	30	1.98
37252788--37252960	32	5.4	32	84	0	204	19	20	21	37	1.94
37259380--37259478	23	4.3	23	89	0	153	24	20	25	30	1.99
37260832--37260906	23	3.3	23	83	1	80	37	17	22	22	1.94
37267269--37267367	28	3.6	27	81	9	119	31	12	28	28	1.92
37268299--37268420	22	5.3	22	75	18	95	29	11	14	44	1.81
37268302--37268487	47	4.0	47	88	3	243	27	12	16	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37268313--37268488	25	7.5	24	74	19	138	27	13	16	42	1.86
37269376--37269561	93	2.0	93	98	0	363	38	19	10	32	1.85
37275141--37275172	16	2.0	16	100	0	64	18	37	6	37	1.76
37279000--37279059	29	2.1	29	100	0	120	55	16	6	21	1.64
37280696--37281271	307	1.9	305	85	3	744	38	14	16	30	1.88
37285260--37285348	42	2.1	42	93	4	153	34	7	26	30	1.85
37286910--37286971	31	2.0	31	100	0	124	38	6	16	38	1.74
37287083--37287126	22	2.0	22	100	0	88	45	18	4	31	1.69
37287417--37287497	20	4.1	19	79	10	83	55	6	1	37	1.33
37287434--37287486	19	2.7	19	80	8	63	56	3	1	37	1.28
37287417--37287496	39	2.1	39	83	9	101	55	6	1	37	1.33
37288910--37288939	16	1.9	15	93	6	51	33	3	0	63	1.11
37292205--37292255	25	2.1	25	81	3	59	41	0	1	56	1.10
37297571--37297617	25	1.9	24	86	4	67	51	4	2	42	1.33
37298191--37298349	43	3.7	43	89	0	228	30	26	15	27	1.96
37298191--37298397	86	2.4	86	84	4	242	30	23	15	29	1.96
37298191--37298370	43	4.2	43	87	1	227	30	26	15	27	1.96
37298231--37298404	43	4.1	41	80	10	129	30	21	16	31	1.95
37298801--37298847	21	2.2	21	84	0	58	4	48	17	29	1.65
37298811--37298852	21	2.0	21	85	0	57	4	50	14	30	1.63
37309178--37309238	27	2.3	27	88	5	88	39	19	18	22	1.92
37309720--37309847	28	4.6	28	93	0	202	26	23	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37312377--37312557	64	2.9	65	81	12	227	39	18	7	34	1.79
37316039--37316269	43	5.4	44	84	8	257	28	16	25	29	1.97
37316039--37316239	84	2.4	84	85	7	248	26	15	26	30	1.96
37316039--37316269	127	1.8	126	82	8	299	28	16	25	29	1.97
37317938--37318085	40	3.7	40	84	8	194	62	0	2	35	1.10
37318012--37318043	16	2.0	16	100	0	64	62	0	0	37	0.95
37318043--37318068	11	2.4	11	100	0	52	53	0	7	38	1.30
37318065--37318094	8	3.8	8	95	0	51	83	0	0	16	0.65
37325040--37325098	20	3.1	19	80	7	57	49	8	5	37	1.55
37325105--37325136	16	2.0	16	100	0	64	37	0	0	62	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196