genome.fa.s25.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  107  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32265958--32266053	41	2.4	39	78	11	113	55	2	4	38	1.31
32266102--32266154	19	2.9	18	78	16	65	60	0	9	30	1.28
32270618--32270646	12	2.3	13	94	5	51	27	6	0	65	1.18
32282655--32282695	22	2.0	22	85	9	59	58	2	2	36	1.24
32283348--32283404	21	2.7	21	73	10	62	35	15	14	35	1.88
32285889--32286062	44	3.9	44	80	5	181	44	14	18	22	1.85
32291042--32291160	59	2.0	59	98	0	229	52	19	6	21	1.68
32291079--32291250	33	5.7	31	70	16	112	54	20	3	21	1.60
32291166--32291242	28	2.6	28	87	6	109	57	20	1	20	1.48
32291196--32291275	9	8.8	9	72	24	62	57	20	1	21	1.48
32291155--32291254	28	3.3	30	77	13	100	56	21	1	22	1.49
32291196--32291275	21	3.5	22	81	13	74	57	20	1	21	1.48
32291372--32291437	31	2.2	29	84	7	87	62	4	10	22	1.46
32291462--32291569	55	1.9	57	83	9	143	49	20	7	23	1.74
32305138--32305204	28	2.4	29	87	5	93	32	0	43	23	1.54
32305145--32305194	19	2.6	19	96	0	91	28	0	44	28	1.55
32305138--32305204	9	7.2	9	83	11	82	32	0	43	23	1.54
32310929--32311125	27	7.3	26	84	5	216	19	18	21	40	1.91
32310929--32311137	54	3.9	53	84	3	249	19	17	21	41	1.90
32310929--32311137	81	2.6	80	83	2	249	19	17	21	41	1.90
32318501--32318534	12	2.8	12	81	0	50	44	23	23	8	1.81
32320747--32320788	5	8.8	5	86	5	52	85	0	11	2	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32320746--32320789	18	2.4	18	88	3	70	86	0	11	2	0.66
32320746--32320789	23	1.9	23	95	0	79	86	0	11	2	0.66
32321064--32321265	108	1.9	108	89	0	314	28	16	8	46	1.77
32321733--32321787	24	2.3	24	87	6	76	34	14	21	29	1.93
32322421--32322720	44	6.8	44	66	11	148	28	19	26	26	1.99
32322116--32323088	219	4.5	219	91	1	1492	28	20	25	26	1.99
32322859--32323037	44	4.1	43	70	16	125	27	16	26	29	1.97
32325329--32325367	18	2.1	18	85	4	51	23	2	2	71	1.10
32327297--32327358	30	2.0	30	84	3	79	66	0	1	32	1.02
32327859--32327890	15	2.1	16	94	5	57	46	6	6	40	1.54
32328322--32328399	29	2.8	27	81	7	77	50	2	3	43	1.34
32328389--32328464	21	3.4	21	71	18	55	64	3	2	28	1.25
32330721--32330762	21	2.0	21	86	9	59	9	16	7	66	1.42
32334688--32334836	43	3.6	41	82	8	158	34	26	16	21	1.95
32334688--32334833	42	3.5	42	82	6	170	35	26	17	21	1.95
32334772--32334903	67	2.0	68	86	4	187	30	28	17	24	1.97
32339375--32339425	25	2.0	25	81	7	59	9	33	1	54	1.44
32341551--32341716	30	5.5	30	75	11	126	39	10	25	24	1.87
32341526--32341746	60	3.7	59	68	13	173	39	11	24	24	1.89
32341701--32341773	30	2.4	30	84	4	94	39	12	21	26	1.89
32341559--32341776	120	1.8	120	83	2	294	38	11	24	24	1.89
32353692--32353775	43	2.0	43	90	4	134	54	0	20	25	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32353707--32353762	16	3.4	16	76	18	53	58	0	17	23	1.38
32357763--32357921	54	3.1	54	72	17	147	45	3	3	48	1.34
32357865--32358279	59	6.9	58	66	20	212	43	2	5	49	1.38
32357864--32358273	120	3.4	120	97	0	723	43	2	4	49	1.38
32358417--32358513	45	2.2	44	87	9	135	35	28	5	30	1.79
32358493--32358557	16	4.1	16	95	0	121	20	35	6	38	1.77
32365585--32365620	18	2.0	18	94	0	63	27	11	13	47	1.77
32368895--32369064	40	4.3	40	88	2	218	26	28	21	23	1.99
32368893--32369117	80	2.8	79	81	4	238	27	28	20	24	1.99
32368893--32369117	40	5.7	39	82	7	186	27	28	20	24	1.99
32374356--32374417	30	2.1	30	100	0	124	32	37	0	30	1.58
32379943--32379987	19	2.3	20	88	3	65	48	6	15	28	1.70
32389130--32389158	15	1.9	15	100	0	58	27	24	6	41	1.80
32395540--32395677	39	3.5	39	94	2	224	29	2	22	44	1.67
32395586--32395657	22	3.5	22	68	26	66	29	2	20	47	1.64
32395540--32395694	39	3.9	39	92	2	222	30	3	22	43	1.69
32398576--32398643	20	3.4	20	78	8	75	19	29	13	38	1.89
32398558--32398686	40	3.2	40	82	0	159	18	28	16	36	1.93
32398651--32398716	20	3.3	20	71	0	60	15	31	21	31	1.94
32403738--32403778	18	2.3	18	91	0	73	21	4	34	39	1.75
32411250--32411287	18	2.1	18	90	0	58	57	5	13	23	1.56
32413867--32413944	41	1.9	41	94	0	138	33	29	14	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32418776--32418823	20	2.5	19	76	6	51	41	6	0	52	1.27
32419599--32419673	37	2.0	37	94	0	132	21	26	22	29	1.99
32420042--32420077	12	2.9	12	91	4	54	16	27	0	55	1.42
32420041--32420078	18	2.1	19	95	5	69	15	26	0	57	1.38
32427150--32427436	40	7.2	40	80	3	346	27	28	20	23	1.99
32427150--32427436	80	3.6	80	93	0	468	27	28	20	23	1.99
32435271--32435455	79	2.3	82	83	7	229	24	27	22	24	2.00
32435252--32435455	40	5.1	40	81	8	229	24	27	22	25	2.00
32437382--32437408	10	2.7	10	100	0	54	92	0	7	0	0.38
32437382--32437419	11	3.5	11	89	7	51	89	5	5	0	0.59
32449345--32449397	6	8.3	6	76	12	52	79	1	3	15	0.96
32449345--32449397	13	4.2	12	76	11	52	79	1	3	15	0.96
32451201--32451239	4	9.8	4	83	10	53	25	2	0	71	0.98
32452757--32452793	15	2.4	15	90	4	56	21	0	2	75	0.92
32453629--32454706	44	23.9	44	71	10	539	28	20	18	32	1.96
32453640--32454166	137	3.9	134	77	8	474	26	19	20	32	1.97
32453683--32454660	92	10.8	89	71	13	392	28	20	18	32	1.96
32453814--32454660	92	9.4	89	74	10	533	28	19	18	32	1.96
32453639--32454166	227	2.3	228	80	3	566	26	19	20	32	1.97
32453668--32454703	181	5.7	181	84	3	1181	28	20	18	32	1.97
32458983--32459221	50	4.7	50	81	5	239	28	21	28	22	1.99
32460523--32460580	12	4.6	12	79	10	62	75	5	1	17	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32460511--32460580	26	2.6	27	86	6	88	74	4	2	18	1.11
32462101--32462199	23	4.3	24	75	6	89	26	21	22	30	1.99
32462101--32462199	46	2.2	46	78	7	110	26	21	22	30	1.99
32462403--32462449	23	2.0	25	83	8	62	40	0	21	38	1.53
32469733--32469844	25	4.6	22	76	16	91	32	22	29	16	1.95
32469739--32469844	49	2.2	49	84	6	135	31	22	30	16	1.95
32469735--32469819	24	3.5	23	76	13	82	31	23	30	14	1.94
32472049--32472129	26	3.3	25	75	13	78	34	23	22	19	1.96
32489977--32490027	21	2.4	21	78	15	61	68	3	9	17	1.33
32492504--32492538	12	2.9	12	95	0	61	0	45	22	31	1.53
32492513--32492695	54	3.4	54	84	2	235	19	32	21	25	1.97
32492525--32492746	108	2.1	108	80	8	247	21	31	22	24	1.98
32494593--32494641	20	2.5	20	81	15	66	12	24	4	59	1.50
32494843--32494987	50	2.9	49	82	5	168	24	25	21	28	1.99
32499523--32499635	40	2.9	38	85	5	145	41	27	18	12	1.86
32499613--32499657	21	2.1	21	95	0	81	44	15	24	15	1.85
32514400--32514424	13	1.9	13	100	0	50	24	12	16	48	1.79
32519707--32519744	19	2.0	20	84	5	51	47	18	5	28	1.70
32521488--32521550	19	3.3	19	66	25	51	50	1	7	39	1.41
32523254--32523338	45	1.9	44	85	2	116	24	28	22	24	1.99
32523265--32523935	44	15.5	44	70	9	315	27	24	19	28	1.98
32523321--32523957	174	3.7	172	88	2	938	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32523313--32523957	345	1.9	348	89	2	1003	27	24	19	29	1.98
32523926--32524330	129	3.1	129	93	0	684	24	22	20	32	1.98
32524293--32524626	44	7.6	44	89	1	431	24	24	20	30	1.98
32524293--32524637	132	2.6	132	85	5	507	24	24	20	31	1.98
32525845--32525904	14	4.1	14	73	16	50	15	8	0	76	1.00
32525847--32525879	15	2.1	16	88	5	50	12	6	0	81	0.85
32525869--32525905	17	2.4	16	86	13	51	13	13	0	72	1.11
32526761--32526801	19	2.2	18	86	4	55	9	9	0	80	0.91
32526753--32526801	12	4.0	13	79	10	59	12	10	0	77	0.99
32526848--32526916	6	11.3	6	93	3	111	18	0	15	65	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196