genome.fa.s25.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  128  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38389016--38389256	42	5.7	42	86	5	299	31	29	17	21	1.96
38391695--38391740	23	2.0	23	87	8	67	67	2	17	13	1.33
38392462--38392714	134	1.9	134	95	3	463	35	7	6	50	1.57
38393952--38394064	40	2.8	39	80	7	138	29	22	23	24	1.99
38394087--38394221	40	3.4	39	76	9	105	17	18	22	40	1.91
38394112--38394222	40	2.8	41	79	6	122	17	19	23	39	1.92
38398389--38398438	26	1.9	26	91	0	82	32	22	16	30	1.95
38402257--38402282	7	3.7	7	100	0	52	53	0	0	46	1.00
38419394--38419466	24	3.1	23	75	14	69	38	21	23	16	1.93
38424548--38424730	50	3.7	50	85	2	224	26	18	21	34	1.96
38424862--38425133	44	6.0	44	74	14	219	26	19	20	33	1.97
38424807--38425077	142	1.9	142	91	0	443	28	20	18	32	1.96
38424862--38425275	186	2.2	186	91	1	668	26	19	19	34	1.96
38425043--38425420	142	2.7	141	92	0	621	26	20	18	34	1.95
38425185--38425422	44	5.2	43	69	19	133	26	21	17	34	1.96
38433942--38433987	19	2.4	19	82	10	58	39	10	23	26	1.88
38441284--38441334	24	2.1	24	92	0	84	23	23	3	49	1.67
38441328--38441633	101	3.0	101	87	0	432	28	24	15	30	1.96
38451933--38452026	9	10.4	9	83	0	125	24	12	24	38	1.90
38451933--38452026	27	3.5	27	92	0	143	24	12	24	38	1.90
38452187--38452211	12	2.1	12	100	0	50	16	24	36	24	1.94
38459762--38459900	68	2.0	69	98	1	271	32	27	4	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38462895--38463059	58	2.9	57	83	7	192	43	0	3	52	1.23
38463224--38463262	16	2.4	16	100	0	78	28	28	7	35	1.85
38465600--38465710	19	5.8	19	89	0	177	37	13	9	39	1.76
38465600--38465703	38	2.7	38	98	0	199	38	12	8	40	1.74
38466023--38467063	132	7.9	132	90	0	1613	29	23	17	28	1.97
38466680--38466992	44	7.1	44	64	11	120	30	22	18	29	1.97
38470672--38470717	24	1.9	24	86	0	65	15	26	13	45	1.82
38473570--38473665	19	4.7	21	79	10	74	40	15	6	37	1.73
38473570--38473627	22	2.6	22	81	7	64	41	17	5	36	1.72
38473606--38473678	19	3.8	19	92	0	128	36	15	9	38	1.80
38477998--38478032	16	2.2	16	89	0	52	22	0	5	71	1.07
38481251--38481315	27	2.4	27	100	0	130	16	20	40	23	1.92
38481376--38481417	22	1.9	22	100	0	84	61	2	30	4	1.29
38481376--38481427	22	2.4	21	90	3	77	67	1	26	3	1.18
38481370--38481427	22	2.6	22	86	5	73	67	1	27	3	1.17
38482153--38482208	21	2.7	21	86	5	78	28	33	8	28	1.87
38485375--38485427	6	8.8	6	93	0	88	0	35	30	33	1.58
38487048--38487089	16	2.7	15	85	7	57	57	2	2	38	1.25
38487200--38487273	38	1.9	38	97	0	139	39	2	4	54	1.34
38487442--38487504	8	7.4	8	72	13	54	47	17	0	34	1.48
38487467--38487756	19	15.2	19	67	24	114	53	12	0	32	1.44
38487471--38487630	49	3.3	49	94	2	272	53	14	1	31	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38487467--38487621	76	2.0	75	84	11	201	52	13	1	32	1.49
38487467--38487621	27	6.1	27	81	14	195	52	13	1	32	1.49
38487414--38487731	49	6.5	48	71	16	169	53	13	0	32	1.44
38487543--38487790	129	2.0	128	79	12	280	54	12	0	32	1.44
38487924--38487970	3	16.3	3	82	8	62	0	38	0	61	0.96
38487924--38487979	14	3.9	14	92	4	85	0	39	0	60	0.97
38490952--38491022	10	6.6	10	76	12	52	76	4	4	15	1.10
38492255--38492300	17	2.7	17	89	0	65	34	2	0	63	1.07
38496525--38496594	29	2.3	29	85	11	88	58	11	5	24	1.54
38500556--38500594	7	5.4	7	87	6	60	33	0	0	66	0.92
38500556--38500599	15	2.9	15	83	6	54	31	0	0	68	0.90
38507733--38507759	14	1.9	14	100	0	54	55	22	0	22	1.44
38511260--38511288	4	7.2	4	100	0	58	75	0	0	24	0.80
38513745--38513789	22	2.0	23	84	16	60	46	8	6	37	1.61
38514273--38514657	189	2.0	190	95	1	693	34	15	14	35	1.88
38517016--38517522	100	5.1	100	82	2	538	27	23	19	28	1.99
38517254--38517427	50	3.5	50	67	6	145	26	24	18	30	1.98
38519155--38519195	7	5.7	7	86	13	57	12	14	0	73	1.11
38519163--38519216	18	2.8	18	86	8	63	12	12	0	74	1.08
38519699--38519740	6	6.7	6	91	2	57	0	2	11	85	0.68
38519695--38519735	19	2.1	19	95	4	73	0	4	9	85	0.73
38519699--38519740	13	3.3	13	84	15	61	0	2	11	85	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38524253--38524287	15	2.3	15	90	5	52	65	0	0	34	0.93
38525787--38525859	29	2.5	30	76	10	78	57	5	8	28	1.50
38526015--38526101	23	3.6	25	75	16	76	57	5	3	33	1.39
38529349--38529460	56	2.0	56	96	0	206	26	14	21	37	1.92
38529450--38529595	74	2.0	74	100	0	292	26	16	29	28	1.97
38537029--38537076	24	2.0	25	83	4	62	68	6	6	18	1.32
38538156--38538195	21	1.9	21	85	10	55	47	27	2	22	1.64
38546579--38546608	7	4.4	7	91	8	53	26	0	0	73	0.84
38546632--38546679	3	16.0	3	86	0	51	25	2	8	64	1.32
38546631--38546679	18	2.7	18	87	0	71	24	2	10	63	1.37
38546798--38546841	17	2.6	17	85	3	63	40	11	0	47	1.39
38546912--38546961	24	2.1	24	85	7	66	28	8	0	64	1.22
38546998--38547054	30	1.9	30	89	7	89	35	3	3	57	1.33
38552553--38552598	24	1.9	24	95	0	83	39	8	30	21	1.84
38553471--38553527	27	2.1	27	83	0	69	59	0	19	21	1.38
38556788--38556821	3	11.3	3	93	0	59	29	0	2	67	1.05
38557407--38557527	61	2.0	61	93	0	206	50	2	6	40	1.42
38558527--38558564	18	2.1	19	90	5	60	47	0	5	47	1.24
38558539--38558622	28	2.9	28	74	19	75	38	3	9	48	1.53
38559077--38559159	31	2.6	30	75	9	85	26	12	10	50	1.72
38559596--38559654	22	2.7	22	86	0	73	47	40	1	10	1.47
38559724--38559762	17	2.4	17	82	4	53	56	2	2	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38559927--38559978	15	3.2	16	82	12	63	38	0	0	61	0.96
38560043--38560095	17	3.2	17	70	5	54	43	3	1	50	1.30
38570427--38570482	29	1.9	29	100	0	112	19	3	42	33	1.69
38570435--38570483	14	3.4	14	73	15	55	22	2	38	36	1.66
38570465--38570514	22	2.3	22	92	0	82	32	2	26	40	1.67
38571878--38572190	159	2.0	160	92	1	531	23	17	19	39	1.92
38573106--38573135	14	2.1	14	100	0	60	60	13	6	20	1.55
38574704--38574763	28	2.3	27	80	16	72	35	0	0	65	0.93
38574710--38574753	19	2.3	19	80	11	54	36	0	0	63	0.95
38576682--38576712	2	16.0	2	93	6	55	51	0	0	48	1.00
38578170--38578198	8	3.6	8	100	0	58	75	0	0	24	0.80
38579710--38579894	92	2.0	92	93	2	318	28	3	25	42	1.72
38585560--38585603	21	2.0	22	95	4	81	36	25	0	38	1.56
38588086--38588139	7	7.7	7	95	0	90	68	0	0	31	0.90
38594578--38594637	21	2.8	21	74	5	57	18	38	23	20	1.93
38605562--38605605	22	2.0	22	86	8	63	81	4	0	13	0.83
38608013--38608129	48	2.5	48	87	2	166	35	20	14	29	1.92
38615953--38615991	17	2.4	17	86	4	53	38	5	2	53	1.37
38618977--38619025	18	2.7	18	81	6	55	40	4	20	34	1.71
38620832--38620925	24	3.8	24	74	4	80	19	25	20	35	1.96
38620878--38620925	25	1.9	25	91	0	78	22	27	18	31	1.97
38628631--38628687	24	2.4	24	87	0	78	12	29	24	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38630469--38630551	26	3.0	26	67	16	67	36	8	1	54	1.39
38630512--38630598	44	1.9	44	84	9	113	37	9	0	52	1.33
38630451--38630565	58	2.0	58	88	3	171	39	8	1	50	1.44
38630563--38630643	44	1.9	41	87	7	117	32	12	2	53	1.52
38637316--38637775	132	3.5	132	92	0	722	27	21	24	26	1.99
38637316--38637795	265	1.8	264	88	1	710	27	21	25	26	1.99
38637597--38637995	220	1.8	221	91	0	665	28	19	24	27	1.98
38638118--38638214	51	1.9	51	82	0	122	27	19	27	24	1.99
38638339--38638414	40	1.9	40	97	0	143	35	13	26	25	1.92
38640350--38640473	63	2.0	63	87	7	180	39	8	1	50	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196