genome.fa.s25.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  149  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44134788--44134854	29	2.3	29	79	5	73	23	17	17	40	1.91
44135028--44135269	126	1.9	125	93	0	412	30	15	22	32	1.95
44136745--44136781	7	5.4	7	84	15	51	67	0	0	32	0.91
44139065--44139104	22	1.9	20	90	10	62	62	0	5	32	1.17
44140805--44141362	46	12.2	46	85	3	628	28	25	16	29	1.97
44142456--44142569	43	2.6	43	79	6	115	26	28	14	30	1.95
44142456--44142538	44	1.9	43	85	7	114	28	28	14	27	1.95
44144478--44144514	17	2.1	18	90	5	58	45	0	24	29	1.53
44144508--44144542	8	4.4	8	100	0	70	77	0	11	11	1.00
44148604--44148630	4	6.8	4	100	0	54	25	0	22	51	1.48
44151845--44151901	11	4.8	11	75	23	53	64	1	1	31	1.13
44151873--44151906	14	2.4	14	100	0	68	61	0	0	38	0.96
44152776--44152816	20	2.1	20	86	4	57	60	2	2	34	1.23
44156382--44156441	29	2.0	29	81	9	68	23	16	20	40	1.91
44157619--44157682	29	2.2	28	83	5	83	29	15	15	39	1.89
44161442--44162123	28	24.4	28	82	8	741	32	1	21	45	1.59
44161478--44162123	222	2.9	221	86	7	902	32	1	21	45	1.59
44164267--44164300	15	2.3	15	90	5	52	67	5	0	26	1.13
44164507--44164574	11	6.6	10	72	24	61	36	0	29	33	1.58
44164488--44164539	22	2.4	22	90	3	79	34	0	28	36	1.58
44164510--44164569	30	2.0	30	96	0	111	35	0	31	33	1.58
44164540--44164588	22	2.2	22	89	7	73	38	0	26	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44175723--44175756	9	3.8	9	88	0	50	32	11	14	41	1.82
44179056--44179253	91	2.2	90	97	0	369	55	7	7	30	1.53
44189835--44189866	3	10.7	3	100	0	64	68	0	31	0	0.90
44191011--44191074	27	2.3	29	79	15	73	62	0	1	35	1.05
44194300--44194343	23	2.0	23	86	8	65	38	0	2	59	1.10
44194434--44194483	26	2.0	26	88	4	75	52	6	0	42	1.26
44197254--44197302	26	1.9	25	91	4	80	0	30	16	53	1.43
44197254--44197316	33	2.0	33	87	6	94	1	28	19	50	1.56
44197399--44197429	8	3.9	8	100	0	62	0	35	0	64	0.94
44200312--44200340	3	9.7	3	100	0	58	68	0	0	31	0.89
44201520--44201559	21	2.0	21	85	9	57	32	2	2	62	1.22
44201545--44201572	7	4.0	7	100	0	56	28	0	0	71	0.86
44205277--44205325	2	25.0	2	95	4	91	48	0	51	0	1.00
44208078--44208207	42	3.1	42	94	2	217	21	20	23	35	1.96
44208530--44208600	21	3.4	21	86	0	88	4	42	18	35	1.70
44209289--44209324	17	2.1	17	94	0	63	2	25	16	55	1.55
44213981--44214262	9	32.4	9	74	13	243	31	1	21	45	1.59
44213985--44214261	34	8.0	34	77	13	221	31	1	21	46	1.59
44214089--44214127	19	2.1	19	85	9	53	30	0	17	51	1.46
44213985--44214262	25	10.7	25	75	14	178	31	1	21	46	1.59
44213985--44214262	52	5.3	53	76	14	192	31	1	21	46	1.59
44213981--44214262	43	6.5	43	75	11	254	31	1	21	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44214278--44214326	26	1.9	26	87	4	73	38	2	6	53	1.38
44214432--44214465	12	2.8	13	86	13	54	50	0	0	50	1.00
44215274--44215357	31	2.7	31	90	1	125	42	22	14	20	1.88
44217609--44217693	38	2.2	38	85	10	111	37	36	2	23	1.68
44217833--44217877	21	2.1	21	91	0	72	42	35	4	17	1.70
44218152--44218197	15	2.9	16	90	6	67	34	47	0	17	1.48
44218152--44218210	15	3.9	15	82	10	66	35	45	1	16	1.58
44218152--44218213	7	8.3	7	74	13	52	33	48	1	16	1.56
44218484--44218623	73	1.9	71	81	11	167	27	25	23	23	2.00
44218557--44218868	112	2.8	114	76	7	330	27	23	22	27	1.99
44218689--44219054	186	2.0	184	82	8	449	24	23	23	28	2.00
44218842--44219053	113	1.9	113	85	5	295	25	24	23	25	2.00
44220168--44220208	20	2.0	21	85	4	57	41	0	12	46	1.41
44232331--44232375	18	2.4	19	81	3	56	75	0	17	6	1.01
44232960--44233012	25	2.1	25	89	6	81	26	22	18	32	1.97
44240110--44240472	199	1.8	199	86	1	521	37	14	20	28	1.91
44242736--44242793	29	1.9	31	86	6	84	37	0	41	20	1.53
44242736--44242796	30	2.0	31	84	9	81	37	0	40	21	1.53
44242845--44242881	9	4.1	9	85	0	56	29	8	13	48	1.71
44242934--44242964	9	3.4	9	90	0	53	38	22	12	25	1.90
44247042--44247094	16	3.3	16	76	10	63	35	24	5	33	1.79
44249856--44249912	3	19.0	3	100	0	114	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44264020--44264161	73	1.9	73	100	0	284	42	11	9	37	1.73
44275037--44275070	7	4.9	7	96	0	59	41	29	14	14	1.86
44280278--44280304	3	9.0	3	100	0	54	33	0	66	0	0.92
44285404--44285506	37	2.8	37	85	4	127	37	16	17	28	1.91
44286244--44286381	72	2.0	68	85	8	188	50	5	3	41	1.42
44291096--44291207	21	5.3	21	76	4	109	14	23	16	45	1.84
44294083--44294201	52	2.3	52	86	9	165	42	5	22	29	1.77
44295108--44295154	22	2.1	22	84	7	60	53	12	6	27	1.63
44297559--44297607	18	2.7	18	87	0	80	16	38	26	18	1.91
44297559--44297643	36	2.5	32	81	7	98	14	35	27	23	1.93
44301787--44301825	20	2.0	20	94	0	69	15	23	7	53	1.67
44304246--44304288	22	2.0	22	95	0	77	9	16	27	46	1.77
44304447--44304627	44	4.2	43	79	8	165	30	29	17	23	1.97
44304447--44304584	44	3.2	43	85	4	170	28	28	18	23	1.98
44304648--44304683	18	1.9	19	88	5	56	38	0	0	61	0.96
44305659--44305689	16	1.9	16	100	0	62	38	12	12	35	1.82
44308812--44309088	41	6.8	41	81	5	337	32	25	19	22	1.98
44308812--44309088	82	3.4	82	88	2	387	32	25	19	22	1.98
44309132--44309266	39	3.4	38	79	6	135	19	20	21	38	1.94
44315740--44315783	22	2.0	21	83	12	54	40	0	0	59	0.98
44320493--44320561	33	2.1	33	100	0	138	42	5	15	36	1.72
44321127--44321180	23	2.3	23	83	0	63	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44321416--44321462	15	3.1	16	84	6	62	57	0	0	42	0.98
44334162--44334194	15	2.3	15	89	5	50	75	0	6	18	1.00
44336488--44336557	33	2.1	33	83	0	86	44	18	4	32	1.69
44336599--44336679	41	2.0	42	85	2	110	23	25	22	28	1.99
44338388--44338845	51	9.8	49	74	12	294	28	18	17	34	1.94
44338359--44338845	44	10.5	45	76	10	371	28	18	18	34	1.95
44338449--44338845	96	4.3	94	79	8	388	28	19	18	34	1.95
44338483--44338845	89	4.0	88	82	8	349	28	19	18	34	1.95
44339403--44339463	11	5.7	11	73	13	56	59	0	1	39	1.08
44339410--44339488	30	2.7	30	76	9	92	64	0	1	34	1.02
44339416--44339452	19	1.9	19	100	0	74	67	0	0	32	0.91
44343596--44343673	25	3.3	23	71	18	72	46	37	2	14	1.58
44343644--44343815	85	2.0	85	94	0	299	42	20	16	19	1.89
44343979--44344008	13	2.3	13	100	0	60	40	43	0	16	1.48
44344156--44344217	9	6.8	9	82	10	81	20	9	29	40	1.84
44344377--44344401	12	2.1	12	100	0	50	16	24	36	24	1.94
44353364--44353404	17	2.3	19	79	8	50	70	0	4	24	1.06
44358027--44358078	20	2.6	20	81	0	68	48	9	9	32	1.69
44358131--44358164	18	1.9	18	94	5	61	61	2	5	29	1.34
44359131--44359189	27	2.2	27	81	6	75	44	0	1	54	1.10
44359501--44359538	18	2.2	18	85	4	51	44	5	0	50	1.24
44360645--44360675	12	2.6	12	89	0	53	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44364278--44364317	21	1.9	21	94	0	71	25	12	10	52	1.70
44368145--44368196	24	2.2	24	85	0	68	48	9	5	36	1.60
44372527--44372573	24	2.0	24	87	8	69	48	6	6	38	1.54
44372539--44372590	24	2.2	24	82	0	59	50	5	3	40	1.45
44374707--44374772	24	2.8	24	88	4	73	22	6	22	48	1.72
44374717--44374772	24	2.4	24	90	3	96	26	3	25	44	1.70
44385003--44385052	25	2.0	25	96	0	91	24	18	16	42	1.89
44390367--44390404	19	2.0	19	94	0	67	36	7	15	39	1.77
44403454--44403485	15	2.1	15	100	0	64	34	18	18	28	1.95
44417525--44417564	20	2.0	20	90	9	64	25	17	27	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196