genome.fa.s25.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  114  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34616771--34616835	20	3.2	20	71	16	53	23	21	16	38	1.93
34619666--34619696	16	1.9	16	93	0	53	74	9	6	9	1.23
34622472--34622502	9	3.3	9	91	8	53	87	0	0	12	0.55
34622706--34622734	13	2.1	14	93	6	51	75	0	3	20	0.94
34623125--34623176	21	2.5	21	82	14	63	65	1	1	30	1.14
34630770--34630821	18	2.9	18	94	0	86	44	17	15	23	1.86
34635770--34636033	40	6.7	40	87	5	340	24	21	28	26	1.99
34643736--34643960	40	5.7	40	86	5	296	24	22	28	25	2.00
34643736--34643983	119	2.1	119	81	7	281	25	21	27	25	1.99
34662921--34663060	11	13.9	11	69	23	71	56	0	2	41	1.11
34662888--34663071	41	4.5	41	86	8	232	58	0	1	39	1.12
34662924--34663037	9	12.0	9	67	22	56	58	0	1	39	1.08
34668911--34668951	18	2.3	18	87	8	57	65	0	0	34	0.93
34686833--34686864	16	2.0	16	100	0	64	43	18	12	25	1.85
34691788--34691829	21	2.0	21	85	0	57	38	2	16	42	1.61
34692276--34692378	26	4.0	26	75	13	106	16	20	24	38	1.92
34697459--34697508	16	3.1	16	77	11	57	36	26	4	34	1.75
34697700--34697803	41	2.6	41	85	1	147	33	22	17	26	1.96
34698714--34698790	4	19.0	4	77	19	72	1	20	1	76	0.93
34698714--34698790	9	8.4	9	78	16	79	1	20	1	76	0.93
34704143--34704184	21	2.2	19	87	12	59	30	0	21	47	1.51
34704564--34704589	5	5.2	5	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34706684--34706787	49	2.1	49	87	3	147	30	8	11	49	1.69
34708113--34708378	122	2.3	117	84	9	336	42	1	4	51	1.31
34708201--34708264	28	2.4	28	86	5	87	43	0	0	56	0.99
34708505--34708610	44	2.5	41	73	18	108	35	30	3	30	1.75
34708522--34708613	46	2.0	46	93	4	161	39	30	4	26	1.75
34708592--34708629	16	2.4	16	95	0	67	26	34	2	36	1.71
34709598--34709628	9	3.4	9	90	0	53	25	12	22	38	1.90
34713044--34713099	29	1.9	29	85	0	76	39	7	16	37	1.76
34716418--34716452	16	2.2	16	94	0	61	57	0	0	42	0.99
34723522--34723561	21	1.9	21	89	0	62	42	12	17	27	1.85
34733409--34733474	29	2.3	29	80	15	75	43	1	3	51	1.26
34737654--34737691	20	1.9	20	88	0	58	55	2	0	42	1.14
34746177--34746219	9	4.6	9	80	8	50	81	4	11	2	0.93
34746180--34746226	23	2.0	23	88	8	69	80	4	10	4	0.98
34746162--34746226	23	3.2	20	72	19	53	78	4	13	3	1.03
34747331--34747370	19	2.0	20	85	4	55	37	12	2	47	1.55
34747428--34747477	26	2.0	24	81	11	57	42	4	8	46	1.52
34747656--34747706	27	1.9	27	88	11	79	21	9	11	56	1.63
34751080--34751125	19	2.4	18	86	10	65	26	21	13	39	1.90
34753611--34753680	35	2.0	35	86	8	97	41	21	5	31	1.76
34753902--34754004	41	2.5	41	87	0	134	25	25	20	29	1.99
34753902--34754019	41	2.9	41	80	2	130	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34754278--34754307	14	2.1	15	93	6	53	40	3	0	56	1.16
34754629--34754672	21	2.1	21	95	0	79	43	13	11	31	1.80
34758861--34758930	35	2.0	35	86	8	97	41	21	5	31	1.76
34759152--34759254	41	2.5	41	88	0	143	25	25	19	30	1.98
34759152--34759269	41	2.9	41	82	2	112	26	25	19	28	1.99
34759527--34759557	12	2.5	12	94	5	53	38	3	0	58	1.15
34759879--34759922	21	2.1	21	91	0	70	45	13	9	31	1.75
34767806--34767929	44	2.8	43	81	7	144	34	16	20	29	1.94
34767949--34768051	46	2.2	46	98	0	197	32	22	16	29	1.96
34770020--34770069	19	2.4	22	77	16	61	40	10	2	48	1.48
34770348--34770398	27	1.9	26	84	11	68	21	11	11	54	1.68
34775502--34775592	49	2.0	42	89	10	119	30	8	30	29	1.87
34775479--34776334	47	18.1	47	95	0	1399	30	9	30	28	1.89
34776497--34776575	37	2.1	37	90	0	122	24	18	31	25	1.98
34785702--34785865	51	3.2	51	92	0	283	32	15	22	28	1.95
34786493--34786805	155	2.0	156	96	1	576	30	10	21	38	1.86
34787704--34787967	40	6.6	40	88	0	368	34	17	29	17	1.93
34789200--34789252	25	2.1	25	92	0	88	62	1	0	35	1.06
34789200--34789246	13	3.8	12	76	18	51	61	2	0	36	1.08
34794478--34794520	22	1.9	23	86	13	63	65	9	0	25	1.22
34800067--34800111	20	2.4	19	85	14	58	53	0	0	46	1.00
34800080--34800142	9	7.1	9	75	20	53	53	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34800082--34800151	34	2.0	34	83	8	88	52	0	1	45	1.09
34801035--34801098	31	2.1	31	85	5	85	35	15	10	37	1.83
34803636--34803667	13	2.3	15	89	10	50	6	18	0	75	1.01
34803890--34803915	5	5.2	5	100	0	52	42	19	19	19	1.90
34804674--34804733	30	2.0	31	83	9	79	41	0	38	20	1.52
34805170--34805242	29	2.5	29	80	13	87	45	16	13	24	1.84
34808136--34808168	4	8.2	4	100	0	66	48	27	0	24	1.51
34809953--34810300	181	1.9	180	85	4	486	39	20	10	29	1.86
34815493--34815520	3	9.3	3	100	0	56	67	0	0	32	0.91
34816760--34816955	41	4.8	41	87	3	236	20	21	24	33	1.97
34817515--34817553	21	1.9	21	89	5	62	20	0	38	41	1.53
34817451--34817601	80	1.9	76	84	5	194	33	1	19	45	1.59
34817535--34817785	89	2.8	89	95	0	439	27	0	25	46	1.58
34817769--34817839	28	2.5	28	78	13	65	26	0	36	36	1.57
34818520--34818574	23	2.5	22	80	8	60	49	7	0	43	1.30
34824059--34824127	35	2.0	35	94	0	120	40	8	14	36	1.77
34838925--34839017	33	2.8	33	86	3	125	13	22	17	46	1.83
34842408--34842460	25	2.1	25	82	6	63	50	0	5	43	1.25
34843689--34843749	31	2.0	29	84	12	77	37	19	18	24	1.94
34847749--34847839	40	2.3	38	78	14	94	40	6	2	50	1.41
34849526--34849555	15	2.0	15	93	0	51	23	20	43	13	1.86
34851405--34851473	31	2.2	32	79	7	79	46	8	10	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34855744--34855858	44	2.6	45	82	6	137	27	22	15	33	1.95
34856098--34856241	45	3.2	45	78	6	132	25	25	20	27	1.99
34875880--34875935	24	2.3	25	81	6	69	39	0	3	57	1.16
34877212--34877287	23	3.3	23	89	7	118	25	18	25	31	1.97
34881763--34882026	38	7.0	38	86	2	334	34	31	18	15	1.92
34884013--34884042	15	2.0	15	100	0	60	40	6	0	53	1.27
34890688--34890756	25	2.8	25	80	2	77	31	18	27	21	1.97
34893902--34894042	30	4.7	30	80	7	139	33	22	5	38	1.78
34893902--34894042	59	2.4	59	79	11	153	33	22	5	38	1.78
34893905--34894070	59	2.8	58	78	12	151	32	22	6	39	1.78
34894592--34894671	6	12.3	6	78	11	70	75	0	25	0	0.81
34894593--34894664	38	1.9	37	86	8	101	73	0	26	0	0.83
34894592--34894671	19	4.1	19	75	3	79	75	0	25	0	0.81
34894592--34894671	7	11.1	7	76	17	58	75	0	25	0	0.81
34894592--34894671	13	6.2	13	82	7	74	75	0	25	0	0.81
34895062--34895091	16	1.9	16	93	6	53	36	3	0	60	1.14
34895583--34895632	17	2.9	17	90	0	82	24	12	10	54	1.67
34895642--34895712	21	3.5	20	78	7	72	45	8	5	40	1.58
34895642--34895712	19	3.6	19	79	7	79	45	8	5	40	1.58
34895761--34895803	21	2.0	21	86	0	59	39	16	9	34	1.80
34895817--34895911	18	5.4	17	73	10	66	34	14	9	41	1.79
34895851--34895902	18	2.7	19	82	8	70	32	9	9	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34901272--34901315	11	3.9	11	84	3	61	79	13	6	0	0.92
34901272--34901342	22	3.1	22	81	15	74	80	12	7	0	0.90
34901272--34901358	23	3.7	23	79	13	88	80	10	9	0	0.91
34901285--34901358	14	5.4	14	74	7	55	81	9	9	0	0.89
34901307--34901347	19	2.2	18	87	12	57	82	9	7	0	0.83
34901307--34901358	26	1.9	26	88	7	77	82	7	9	0	0.84
34901274--34901358	22	3.7	22	76	16	73	80	10	9	0	0.92
34902240--34903674	76	18.6	76	90	4	1823	27	16	19	36	1.93
34902240--34903674	153	9.3	150	88	5	1800	27	16	19	36	1.93
34903897--34904025	30	4.3	30	81	7	131	33	24	5	37	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196