genome.fa.s25.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  32  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9012006--9012037	17	1.9	17	93	6	57	59	0	9	31	1.29
9012409--9012651	130	1.9	132	85	5	341	32	1	41	25	1.63
9012619--9012669	21	2.4	21	83	6	59	47	0	25	27	1.53
9012619--9012661	20	2.0	20	82	8	50	44	0	30	25	1.55
9013873--9013925	20	2.6	21	78	6	63	39	18	26	15	1.90
9014916--9014945	15	1.9	16	93	6	53	16	6	3	73	1.18
9014914--9014961	25	2.0	24	84	12	62	18	4	4	72	1.17
9016125--9016168	17	2.7	17	89	6	65	13	2	4	79	0.98
9018818--9018895	38	2.1	38	100	0	156	30	17	23	28	1.97
9019997--9020061	20	3.2	20	70	12	60	26	29	13	30	1.94
9027383--9028541	44	25.7	44	77	6	696	34	15	19	30	1.93
9027651--9027981	51	6.9	49	71	15	210	33	15	19	31	1.93
9027510--9028515	89	11.0	95	75	9	543	34	15	18	30	1.93
9027367--9028505	221	5.0	219	75	8	685	34	15	19	31	1.93
9028192--9028443	133	1.9	133	83	1	326	34	16	17	30	1.92
9027891--9028541	45	14.6	43	79	4	300	34	15	19	30	1.93
9029144--9029190	13	3.5	14	82	8	53	78	0	14	6	0.93
9030027--9030063	13	2.8	14	84	16	60	21	0	0	78	0.75
9030247--9030296	22	2.3	22	86	3	75	24	16	4	56	1.57
9031831--9031856	9	2.9	9	100	0	52	11	11	23	53	1.69
9031842--9031890	24	2.0	24	100	0	98	30	4	20	44	1.70
9035128--9035254	64	2.0	64	85	3	175	21	23	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9035834--9035895	12	5.0	12	78	7	52	67	1	22	8	1.25
9036215--9036248	8	4.2	8	100	0	68	52	23	0	23	1.47
9036379--9036435	15	4.0	13	74	17	51	63	1	1	33	1.15
9038890--9038947	29	1.9	31	82	6	75	53	0	1	44	1.10
9041081--9041117	19	1.9	19	94	0	65	51	2	24	21	1.61
9041797--9041842	19	2.5	18	86	10	58	36	2	0	60	1.09
9041819--9041897	41	2.0	40	85	7	106	35	2	2	59	1.24
9042087--9042113	9	3.0	9	100	0	54	33	0	11	55	1.35
9052427--9052567	44	3.2	44	65	7	115	26	30	21	20	1.98
9052413--9052912	177	2.8	176	86	2	691	30	27	21	20	1.98
9052413--9052912	88	5.7	88	86	1	680	30	27	21	20	1.98
9052912--9053053	45	3.2	45	85	2	205	30	22	20	26	1.98
9053288--9053751	44	10.7	44	71	11	199	29	20	21	28	1.98
9053336--9053543	85	2.4	87	79	12	205	28	19	22	29	1.98
9053273--9053689	218	1.9	219	89	2	651	29	19	22	28	1.98
9053301--9053751	218	2.1	218	85	3	597	29	20	22	27	1.98
9054177--9054232	21	2.8	19	84	10	76	39	8	14	37	1.77
9054177--9054232	19	2.9	21	89	10	84	39	8	14	37	1.77
9054190--9054255	19	3.0	22	82	12	66	37	7	16	37	1.77
9056961--9057008	18	2.6	18	83	9	53	52	2	2	43	1.24
9059903--9059975	37	2.0	37	97	0	137	45	6	15	32	1.72
9060712--9060744	2	16.0	2	93	6	57	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9066372--9066501	41	3.1	41	80	3	134	34	23	20	22	1.97
9068759--9068858	37	2.7	37	75	6	94	20	15	28	37	1.92
9074101--9074183	22	3.9	21	85	4	103	46	21	20	10	1.81
9077399--9077494	42	2.3	42	87	0	129	31	13	16	38	1.88
9077581--9077676	24	4.0	24	80	4	113	26	18	21	33	1.97
9077583--9077677	48	2.0	48	87	4	138	25	18	23	32	1.97
9077631--9077782	64	2.4	64	85	0	196	26	17	23	31	1.97
9077695--9077741	24	2.0	24	86	0	67	27	21	23	27	1.99
9078408--9078444	16	2.2	18	85	9	51	45	5	8	40	1.56
9079516--9079577	28	2.3	27	82	2	70	45	9	11	33	1.73
9079702--9079746	24	1.9	23	86	4	63	57	0	6	35	1.25
9081467--9081813	44	7.8	44	73	6	227	25	24	19	30	1.98
9081568--9081859	88	3.2	88	81	7	329	25	23	19	32	1.97
9081475--9081773	133	2.3	133	84	2	397	25	24	19	30	1.98
9093649--9093710	28	2.3	27	82	2	70	45	9	11	33	1.73
9093972--9094002	4	7.8	4	100	0	62	77	0	0	22	0.77
9095883--9095990	56	1.9	56	90	0	171	52	10	13	23	1.71
9096517--9096558	7	6.1	7	94	5	77	40	0	0	59	0.97
9096505--9096560	3	17.7	3	77	17	51	41	1	0	57	1.09
9100837--9100869	16	2.1	16	100	0	66	57	12	30	0	1.35
9109140--9109246	32	3.3	32	74	0	97	20	35	21	22	1.96
9112344--9112425	31	2.6	31	90	0	119	20	30	10	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9114540--9114630	28	3.2	28	79	3	94	34	25	12	28	1.92
9114606--9114646	14	2.9	14	81	0	55	29	31	14	24	1.95
9114608--9114653	21	2.2	21	84	0	56	30	32	15	21	1.94
9118502--9118538	15	2.5	15	86	0	56	45	0	0	54	1.00
9119719--9119757	19	2.0	20	90	10	62	48	5	0	46	1.24
9121935--9121982	16	2.9	16	82	14	62	60	16	6	16	1.55
9121941--9121982	16	2.6	16	92	0	75	61	14	7	16	1.53
9126277--9126326	17	2.9	18	79	8	59	44	10	16	30	1.80
9127495--9127534	21	2.0	20	85	5	53	27	27	20	25	1.99
9129598--9129631	17	2.0	18	88	11	54	41	11	0	47	1.40
9137102--9137154	25	2.1	25	92	0	88	41	15	7	35	1.75
9141990--9142035	23	2.0	23	95	0	83	15	17	13	54	1.71
9143795--9143968	59	3.0	59	83	9	198	43	1	2	51	1.26
9144129--9144179	16	3.2	16	91	0	84	27	29	5	37	1.80
9146258--9146298	21	1.9	22	90	5	66	75	2	21	0	0.92
9153040--9153084	21	2.1	22	84	12	58	51	4	0	44	1.21
9154023--9154099	24	3.2	24	66	14	68	19	55	10	14	1.67
9154024--9154124	48	2.1	48	86	0	139	19	53	13	12	1.72
9156068--9156104	3	12.0	3	94	5	65	32	0	0	67	0.91
9156071--9156103	16	2.1	16	100	0	66	30	0	0	69	0.88
9156068--9156104	19	1.9	19	100	0	74	32	0	0	67	0.91
9163248--9163330	33	2.6	33	80	3	98	20	25	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9167605--9167675	30	2.4	30	76	4	81	22	57	7	12	1.59
9167657--9167719	27	2.2	30	86	8	87	19	50	11	19	1.76
9172146--9172180	16	2.2	16	100	0	70	14	17	17	51	1.77
9174492--9174598	21	5.2	21	80	6	112	45	17	22	14	1.84
9181010--9181052	15	2.9	15	83	10	54	69	4	2	23	1.18
9182219--9182326	32	3.5	30	73	13	85	25	12	4	58	1.53
9182351--9182442	41	2.2	42	78	1	105	22	7	1	68	1.21
9182656--9182690	3	11.7	3	93	0	61	31	2	0	65	1.07
9183655--9183795	72	2.0	72	97	2	266	41	4	9	45	1.56
9183886--9184244	178	2.0	180	90	1	560	35	9	6	48	1.62
9186703--9186736	17	1.9	18	88	5	52	17	0	8	73	1.08
9187119--9187157	20	2.0	20	84	0	51	33	0	7	58	1.26
9220330--9220407	41	1.9	41	94	0	138	32	6	12	48	1.67
9224022--9224058	19	1.9	19	100	0	74	37	2	16	43	1.62
9224100--9224181	41	2.0	41	95	0	146	29	8	14	47	1.74
9229975--9230029	23	2.3	25	79	20	64	70	7	18	3	1.25
9236442--9236675	79	3.0	79	85	6	293	14	17	17	50	1.78
9247013--9247069	29	2.0	29	83	10	73	28	8	22	40	1.84
9247308--9247333	13	2.0	13	100	0	52	46	15	7	30	1.74
9247342--9247406	30	2.2	30	97	0	121	27	30	3	38	1.72
9248503--9248545	18	2.4	18	88	0	59	23	25	9	41	1.84
9252039--9252432	126	3.1	126	88	3	580	29	17	15	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9252510--9252601	34	2.7	33	83	5	121	46	14	0	39	1.44
9252619--9252709	35	2.6	34	82	6	110	46	20	1	31	1.58
9252698--9252737	15	2.7	15	80	3	55	55	35	0	10	1.34
9254742--9254803	31	2.0	31	100	0	124	35	16	29	19	1.93
9259148--9259190	19	2.3	18	85	14	61	25	0	2	72	0.97
9265220--9265254	17	2.1	18	89	10	56	48	0	8	42	1.33
9266199--9266380	51	3.6	50	76	11	165	28	14	24	33	1.94
9270091--9270136	24	1.9	24	91	8	76	36	0	2	60	1.09
9270233--9270260	9	3.1	9	100	0	56	57	10	0	32	1.33
9270203--9270412	68	3.1	68	97	1	388	45	9	4	40	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196