genome.fa.s25.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  132  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39444501--39444569	21	3.3	21	83	0	75	33	18	42	5	1.75
39444991--39445073	42	2.0	43	90	2	132	30	21	20	27	1.98
39445004--39445137	42	3.2	41	80	14	114	26	23	19	31	1.98
39445216--39445259	22	2.0	22	86	0	61	47	27	15	9	1.76
39457099--39457148	23	2.2	23	85	0	64	42	18	14	26	1.87
39459059--39459095	18	2.2	18	85	9	51	43	5	0	51	1.24
39460206--39460248	6	7.0	6	82	15	52	51	0	0	48	1.00
39473348--39473423	27	2.9	26	79	9	75	27	14	13	44	1.82
39474721--39474749	15	1.9	15	100	0	58	86	0	13	0	0.58
39478583--39478689	25	4.3	25	86	1	144	15	24	22	37	1.93
39485693--39485807	25	4.6	25	84	4	144	16	23	21	38	1.93
39492862--39492928	30	2.3	30	82	10	84	28	8	7	55	1.58
39494196--39494234	3	13.0	3	100	0	78	0	33	0	66	0.92
39497984--39498287	109	2.8	109	81	3	321	44	18	15	21	1.87
39497984--39498187	109	1.9	109	90	0	327	41	19	18	21	1.91
39500519--39500553	4	8.8	4	90	0	52	25	2	0	71	1.00
39501517--39501575	31	1.9	31	86	6	84	40	3	11	44	1.58
39501580--39501661	31	2.6	32	71	9	80	37	6	14	41	1.71
39502374--39502398	6	4.2	6	100	0	50	16	36	16	32	1.90
39504339--39504495	78	2.0	78	91	0	251	33	9	10	46	1.71
39504456--39504571	58	2.0	59	86	5	164	50	7	9	31	1.63
39511324--39511391	22	3.1	21	81	8	82	29	27	1	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39511363--39511421	30	2.0	30	93	0	100	30	35	0	33	1.58
39511393--39511434	22	1.9	22	90	0	66	33	33	0	33	1.58
39511491--39511540	20	2.7	18	79	11	55	34	0	0	66	0.92
39511476--39511533	29	2.0	29	90	9	93	37	0	1	60	1.07
39511480--39511540	28	2.1	29	85	8	81	37	0	1	60	1.07
39511479--39511540	29	2.1	29	85	11	83	37	0	1	61	1.06
39511624--39511686	24	2.7	23	75	18	58	28	0	4	66	1.12
39513801--39513875	23	3.2	24	83	5	91	49	25	0	25	1.51
39513833--39514417	33	19.3	31	77	16	442	49	22	0	27	1.53
39513884--39513986	43	2.6	38	77	16	109	50	21	0	28	1.49
39513896--39513988	43	2.2	43	90	1	143	50	19	0	30	1.48
39513967--39514050	23	3.4	23	80	15	105	46	26	1	26	1.60
39513953--39514417	33	15.9	28	81	13	455	48	23	0	27	1.53
39514192--39514273	28	3.3	23	79	10	74	50	24	0	25	1.50
39517947--39517991	23	2.0	23	90	0	72	48	11	6	33	1.65
39519269--39519328	30	2.0	31	86	3	86	40	0	40	20	1.52
39520124--39520167	19	2.3	19	84	7	54	59	0	4	36	1.18
39520201--39520266	23	2.8	22	80	17	71	45	1	1	51	1.19
39520248--39520300	22	2.5	22	90	3	81	26	3	0	69	1.05
39521788--39521822	18	1.9	19	88	11	56	62	0	14	22	1.31
39522366--39522402	18	2.1	18	94	0	65	0	56	0	43	0.99
39522462--39522511	25	2.0	25	88	0	73	4	30	4	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39522699--39522724	11	2.4	11	100	0	52	23	0	15	61	1.33
39525005--39525043	20	2.0	20	94	0	69	48	0	2	48	1.15
39525142--39525181	20	2.0	20	85	0	53	50	10	10	30	1.69
39528258--39528343	29	2.9	29	82	3	91	38	20	16	24	1.93
39530846--39530899	15	3.5	15	80	5	63	16	24	0	59	1.37
39530847--39530898	16	3.3	16	79	12	54	17	23	0	59	1.37
39530988--39531025	2	19.5	2	83	5	51	47	5	0	47	1.24
39532365--39532396	10	3.1	11	86	13	50	25	0	6	68	1.12
39537797--39537890	43	2.2	43	94	0	161	29	17	8	44	1.78
39538713--39538758	23	2.0	23	95	0	83	54	8	19	17	1.68
39541950--39542009	29	2.0	30	83	3	77	41	3	8	46	1.50
39545414--39545447	16	2.1	16	88	0	50	50	11	11	26	1.73
39545927--39545952	13	2.0	13	100	0	52	53	7	15	23	1.67
39550925--39551013	9	9.8	9	84	7	99	40	28	8	22	1.84
39551160--39551189	13	2.3	13	100	0	60	16	0	43	40	1.48
39552748--39552871	30	4.1	30	93	1	203	25	24	6	43	1.78
39552758--39552865	15	7.2	15	67	12	78	25	22	7	44	1.79
39558696--39558775	31	2.7	29	84	9	92	40	10	10	40	1.72
39566323--39566357	18	1.9	18	88	0	52	54	0	0	45	0.99
39572846--39572886	20	2.0	20	85	0	55	36	4	0	58	1.20
39572984--39573025	20	2.0	21	86	13	61	28	2	4	64	1.26
39574052--39574331	43	6.5	42	81	6	269	28	27	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39574055--39574341	86	3.4	84	82	7	328	27	26	17	28	1.97
39580393--39580453	9	7.0	9	76	10	56	32	0	19	47	1.50
39580505--39580530	13	2.0	13	100	0	52	38	7	0	53	1.30
39581042--39581071	9	3.3	9	100	0	60	60	0	0	40	0.97
39581480--39581559	39	2.1	39	90	0	124	41	17	12	28	1.86
39583585--39583619	15	2.3	15	90	9	54	51	22	0	25	1.48
39584285--39584566	41	6.9	41	91	2	361	32	28	19	19	1.96
39584681--39584861	64	2.9	63	89	8	262	41	17	8	32	1.79
39590549--39590583	15	2.3	15	90	9	54	51	22	0	25	1.48
39591240--39591488	41	6.1	39	80	9	205	34	27	17	20	1.95
39591291--39591493	81	2.5	81	87	4	268	34	27	17	20	1.95
39591605--39591784	64	2.9	62	88	8	258	41	17	8	32	1.79
39593270--39593328	29	2.0	29	96	0	109	38	10	5	45	1.60
39594616--39594734	41	2.9	41	80	5	132	16	22	19	41	1.90
39596276--39596325	24	2.1	24	88	0	73	34	6	8	52	1.55
39596285--39596331	24	2.0	24	91	0	76	36	6	8	48	1.59
39604663--39604738	39	1.9	39	86	0	107	19	23	32	23	1.97
39604950--39605219	126	2.2	125	93	2	461	34	17	20	28	1.94
39605202--39605242	13	3.1	13	79	6	55	26	17	26	29	1.97
39605197--39605240	14	3.2	14	80	6	63	25	20	25	29	1.99
39605239--39605323	21	4.0	21	96	3	161	23	0	32	43	1.54
39605239--39605323	43	2.0	42	97	2	161	23	0	32	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39605344--39605368	12	2.1	12	100	0	50	60	0	0	40	0.97
39605880--39605922	18	2.4	18	88	0	59	44	9	27	18	1.80
39606569--39606594	7	3.7	7	100	0	52	57	15	0	26	1.38
39607797--39607859	22	2.8	22	80	20	69	46	1	30	22	1.61
39609238--39609279	10	4.6	9	88	8	59	11	9	2	76	1.12
39609238--39609278	18	2.3	18	91	8	66	12	9	2	75	1.13
39610546--39610570	11	2.3	11	100	0	50	60	0	0	40	0.97
39612604--39612641	19	2.0	20	84	5	51	34	2	2	60	1.24
39613132--39613343	35	5.6	40	69	19	148	23	21	22	32	1.98
39613095--39613347	75	3.4	75	87	1	330	22	22	23	31	1.99
39613097--39613303	35	5.6	35	67	17	107	22	21	23	31	1.98
39622736--39622783	22	2.2	22	85	7	62	41	2	0	56	1.11
39628885--39628926	17	2.3	19	80	12	52	30	0	14	54	1.40
39628893--39628930	17	2.2	18	85	4	51	28	0	18	52	1.45
39629340--39629376	17	2.1	18	90	5	58	24	0	2	72	0.97
39629340--39629388	13	3.8	13	82	15	57	22	0	4	73	1.00
39634460--39634550	46	2.0	46	82	2	110	25	21	20	31	1.98
39646068--39646137	21	3.3	21	79	0	86	11	25	28	34	1.91
39656949--39657010	30	2.0	32	90	6	101	66	0	4	29	1.12
39658619--39658682	31	2.1	31	100	0	128	28	15	32	23	1.95
39659149--39659264	39	3.0	37	87	8	153	26	3	0	69	1.04
39659184--39659242	9	6.6	9	82	7	75	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39659193--39659273	18	4.2	19	80	13	94	29	1	0	69	0.97
39659220--39659279	31	2.0	30	86	3	84	35	1	0	63	1.05
39660079--39660107	9	3.2	9	100	0	58	65	0	0	34	0.93
39660432--39660473	3	14.0	3	89	0	66	61	0	4	33	1.17
39663399--39663619	22	10.0	22	84	1	273	42	16	11	29	1.84
39663399--39663619	44	5.0	44	90	0	334	42	16	11	29	1.84
39663399--39663619	88	2.5	88	93	0	370	42	16	11	29	1.84
39663722--39663835	42	2.8	40	76	7	111	26	24	23	25	2.00
39663722--39663984	43	6.2	43	80	4	257	25	26	20	27	1.99
39664422--39664472	21	2.4	21	86	0	66	3	43	17	35	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196