genome.fa.s25.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  159  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46689577--46689619	17	2.5	17	84	0	68	20	0	0	79	0.74
46694089--46694735	114	5.7	113	89	0	961	26	19	27	27	1.99
46694078--46694735	227	2.9	226	88	2	989	25	19	27	27	1.99
46694087--46694735	341	1.9	340	89	0	1012	26	19	27	27	1.99
46694639--46694792	73	2.1	72	90	1	236	27	18	27	26	1.98
46694964--46694990	14	1.9	14	100	0	54	33	0	29	37	1.58
46695228--46695274	14	3.3	14	87	3	67	29	0	29	40	1.57
46695286--46695332	14	3.3	14	75	13	51	23	0	36	40	1.55
46695286--46695356	15	4.9	14	72	17	56	23	0	38	38	1.55
46695293--46695341	14	3.4	14	78	13	55	22	0	42	34	1.54
46695272--46695356	29	3.0	29	74	17	79	23	0	36	40	1.55
46695902--46696285	101	3.7	99	81	10	362	47	11	13	26	1.77
46696323--46696580	130	2.0	128	96	1	471	34	15	17	32	1.91
46696253--46697005	277	2.6	287	87	9	996	37	15	15	30	1.90
46696453--46697005	156	3.8	150	89	6	823	38	16	14	30	1.89
46698412--46698441	15	2.0	15	93	0	51	46	0	10	43	1.37
46700633--46700665	12	2.8	12	86	4	50	27	0	9	63	1.24
46700937--46701018	43	1.9	43	89	0	128	21	23	30	24	1.99
46703433--46703490	29	2.0	29	83	10	73	41	5	1	51	1.34
46710273--46710305	16	2.1	16	94	0	57	24	9	12	54	1.66
46722286--46722337	18	3.1	17	77	5	52	34	0	1	63	1.06
46730384--46730412	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46733013--46733056	18	2.4	18	88	7	63	68	4	4	22	1.27
46733756--46733816	7	8.7	7	94	0	104	75	0	0	24	0.80
46734888--46734944	3	20.7	3	77	16	61	24	0	3	71	1.01
46734891--46734946	11	5.2	11	83	10	64	23	0	3	73	0.99
46734887--46734946	8	7.4	8	80	12	61	23	0	3	73	0.98
46735115--46735144	16	1.9	16	93	6	53	36	0	0	63	0.95
46736674--46736707	16	2.1	16	100	0	68	17	17	23	41	1.90
46737151--46737195	19	2.4	19	85	7	56	28	20	8	42	1.82
46739044--46739097	25	2.2	24	83	9	65	24	9	5	61	1.48
46740454--46740492	17	2.4	16	95	4	69	41	2	0	56	1.13
46746034--46746354	110	2.9	109	83	3	394	32	14	17	35	1.91
46749175--46749200	13	2.0	13	100	0	52	38	23	23	15	1.92
46750462--46750506	13	3.4	14	85	8	60	68	0	17	13	1.20
46750462--46750506	7	6.9	7	82	12	60	68	0	17	13	1.20
46750462--46750506	20	2.3	20	92	3	74	68	0	17	13	1.20
46751746--46752393	86	7.5	86	91	1	994	27	23	22	25	2.00
46752383--46752771	130	3.0	130	84	1	462	28	19	23	28	1.98
46754214--46754286	23	3.2	23	92	0	128	30	24	21	23	1.99
46760327--46760399	23	3.2	23	92	0	128	30	24	21	23	1.99
46761734--46761768	17	2.1	17	100	0	70	28	54	5	11	1.59
46763738--46764058	110	2.9	109	83	3	394	32	14	17	35	1.90
46779193--46779232	22	1.9	20	90	10	62	32	5	2	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46790087--46790162	38	2.0	38	100	0	152	28	10	18	42	1.83
46794972--46795014	15	2.9	14	80	10	50	60	0	6	32	1.23
46810117--46810141	12	2.1	12	100	0	50	48	0	8	44	1.32
46818655--46818694	5	8.2	5	88	5	64	20	2	0	77	0.88
46818655--46818691	19	1.9	19	94	0	65	18	2	0	78	0.87
46819351--46819400	20	2.4	20	84	15	66	74	12	14	0	1.09
46819483--46819570	7	12.3	7	72	9	61	73	1	25	0	0.90
46819485--46819570	11	7.3	11	75	19	84	74	1	24	0	0.89
46819483--46819582	14	7.0	14	77	8	85	73	1	26	0	0.90
46819485--46819556	4	19.8	4	73	21	61	76	1	22	0	0.86
46819677--46819743	23	2.8	24	85	12	86	68	5	23	1	1.20
46819925--46819954	14	2.2	14	94	5	53	20	13	3	63	1.43
46820327--46820372	17	2.6	17	83	12	58	30	15	8	45	1.76
46820430--46820521	16	5.3	18	68	18	52	39	13	11	35	1.81
46820429--46820520	36	2.6	34	84	6	105	39	13	11	35	1.81
46820554--46820840	18	15.4	19	66	21	103	31	12	11	44	1.78
46820557--46820635	36	2.2	36	88	4	115	26	15	10	48	1.76
46820609--46820661	27	2.0	25	85	7	70	20	13	13	52	1.73
46820632--46820729	17	5.4	18	75	13	76	31	10	11	46	1.73
46820543--46820715	80	2.2	79	81	6	188	28	12	11	47	1.76
46820692--46820840	17	8.3	17	67	15	77	30	12	12	44	1.79
46820751--46820790	20	1.9	22	90	10	66	40	12	10	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46820632--46820840	38	5.7	37	70	20	111	32	11	11	44	1.77
46821572--46821640	34	2.0	34	94	0	120	34	17	20	27	1.95
46823332--46823744	140	3.0	140	85	3	521	30	19	20	29	1.97
46824051--46824116	8	8.4	8	73	18	50	45	0	3	51	1.16
46824048--46824113	7	8.6	7	76	18	53	43	0	3	53	1.16
46824058--46824126	32	2.2	32	79	7	79	47	0	4	47	1.21
46824897--46824946	15	3.2	15	76	20	57	36	0	14	50	1.43
46824929--46824992	29	2.2	28	83	10	76	39	0	17	43	1.49
46825027--46825157	41	3.3	38	71	14	99	25	16	23	35	1.95
46827794--46827987	96	2.0	96	87	4	275	33	17	13	35	1.89
46830881--46830911	13	2.4	13	94	0	53	32	0	12	54	1.38
46831006--46831298	50	5.8	50	93	0	487	25	22	31	20	1.98
46835476--46835673	42	4.7	42	86	2	254	42	15	24	17	1.88
46835899--46835985	45	1.9	46	85	2	122	44	8	2	44	1.46
46837746--46837830	31	2.6	32	76	14	86	56	7	0	36	1.27
46842843--46842870	3	9.3	3	100	0	56	35	0	0	64	0.94
46845287--46846546	170	7.4	170	89	4	1802	28	20	22	29	1.98
46854141--46854337	100	2.0	95	90	4	304	35	20	15	29	1.93
46857943--46858007	24	2.7	24	75	13	62	32	23	0	44	1.53
46858142--46858188	3	16.0	3	77	4	51	59	4	0	36	1.17
46858142--46858188	12	4.0	12	86	5	60	59	4	0	36	1.17
46858442--46858488	22	2.0	23	84	12	60	29	27	0	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46858886--46858925	17	2.3	17	91	4	62	5	12	7	75	1.18
46858941--46858972	16	1.9	17	93	6	57	53	3	0	43	1.16
46858962--46858993	5	6.4	5	100	0	64	59	0	0	40	0.97
46859529--46859569	20	2.0	20	85	0	55	41	17	26	14	1.88
46860092--46860257	83	2.0	83	100	0	332	32	14	4	48	1.65
46869176--46869223	8	5.6	8	85	7	60	75	0	2	22	0.91
46885375--46885420	24	2.0	23	83	12	58	26	6	10	56	1.58
46892106--46892158	20	2.7	19	77	11	54	22	5	1	69	1.19
46892114--46892155	19	2.2	19	83	8	50	19	7	2	71	1.20
46892716--46892770	27	2.0	27	89	0	83	18	20	10	50	1.76
46901667--46901697	9	3.4	9	90	0	53	25	12	22	38	1.90
46901993--46902052	30	2.0	31	86	3	86	20	40	0	40	1.52
46912708--46912773	35	1.9	34	90	6	107	34	9	12	43	1.73
46914117--46914186	27	2.6	27	80	8	79	50	21	2	25	1.63
46918449--46918479	6	5.2	6	92	0	53	70	16	12	0	1.16
46922872--46923242	46	8.6	45	83	12	469	34	14	22	28	1.93
46922954--46923107	36	4.0	36	78	17	175	36	14	20	28	1.92
46922908--46923242	81	4.0	81	87	8	460	34	15	22	28	1.94
46923036--46923107	35	2.0	36	94	2	128	36	13	20	29	1.92
46933266--46933341	23	3.3	23	96	0	143	31	26	21	21	1.98
46940617--46940692	23	3.3	23	96	0	143	31	26	21	21	1.98
46944132--46944197	10	6.6	10	71	13	55	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46944133--46944189	21	2.8	21	83	2	62	57	0	0	42	0.98
46945220--46945253	16	2.1	16	88	0	50	70	0	0	29	0.87
46945208--46945272	31	2.1	32	86	13	91	63	3	0	33	1.10
46946570--46946613	21	2.1	21	84	16	56	50	6	38	4	1.50
46952627--46952710	31	2.7	32	83	10	113	44	7	0	48	1.30
46952627--46952717	29	3.0	29	77	6	92	43	7	1	47	1.39
46955953--46956026	38	1.9	38	97	0	139	21	20	13	44	1.85
46956169--46956217	16	3.1	16	78	0	53	26	2	20	51	1.59
46956497--46956592	48	2.0	48	89	0	147	13	22	14	48	1.79
46957229--46957298	30	2.3	30	82	0	77	42	25	21	10	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196