genome.fa.s25.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  165  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48372434--48372529	30	3.0	30	71	20	79	31	5	2	61	1.29
48381397--48381494	17	5.4	17	66	13	61	50	13	3	33	1.57
48381391--48381519	37	3.5	37	93	3	208	49	13	3	32	1.61
48381414--48381477	20	3.3	20	68	12	62	45	15	4	34	1.67
48383814--48383855	20	2.1	20	100	0	84	66	0	4	28	1.12
48384330--48384385	24	2.4	24	77	19	64	33	1	0	64	1.04
48385394--48385418	6	4.2	6	100	0	50	48	0	32	20	1.50
48386572--48386790	50	4.4	49	77	5	199	34	18	27	19	1.95
48386561--48386790	25	9.2	25	70	7	146	34	18	27	19	1.95
48386648--48386812	50	3.3	50	76	8	165	37	18	26	17	1.93
48386648--48386813	25	6.6	25	72	5	102	37	18	26	17	1.93
48393688--48393896	92	2.3	91	85	5	260	44	3	4	46	1.42
48393950--48394160	66	3.4	63	69	21	192	42	3	6	48	1.44
48393919--48394204	120	2.4	120	94	3	488	43	2	4	48	1.39
48394033--48394067	18	2.0	17	88	5	52	45	0	0	54	0.99
48394153--48394187	18	2.0	17	88	5	52	45	0	0	54	0.99
48394141--48394456	156	2.0	157	95	0	571	47	5	3	43	1.42
48394309--48394343	18	2.0	17	88	5	52	45	0	0	54	0.99
48394309--48394366	16	3.6	16	78	21	52	44	0	1	53	1.10
48394579--48394614	16	2.2	16	95	0	63	36	38	0	25	1.56
48400397--48400442	20	2.2	21	84	3	58	34	10	19	34	1.87
48401243--48401288	21	2.2	21	88	0	65	56	17	21	4	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48407922--48407962	21	2.0	21	95	0	73	17	34	19	29	1.94
48409688--48409723	18	2.1	18	89	5	56	66	2	8	22	1.31
48410864--48410904	17	2.4	17	88	8	57	9	2	14	73	1.19
48411342--48411518	96	1.9	95	85	3	248	28	24	18	28	1.98
48411523--48411668	77	1.9	77	84	0	193	29	25	13	32	1.93
48411604--48411774	45	3.8	45	79	5	150	28	25	16	29	1.97
48413195--48413288	49	1.9	49	84	4	127	25	23	20	30	1.98
48413244--48413441	50	3.8	50	77	6	164	23	27	21	28	1.99
48416172--48416356	46	4.0	46	89	0	280	29	27	8	34	1.87
48417583--48417630	17	2.9	17	90	3	71	54	18	0	27	1.44
48425608--48425747	46	3.0	46	92	0	235	36	8	25	29	1.86
48435692--48435745	27	2.0	26	82	10	65	25	3	20	50	1.65
48445770--48445804	18	1.9	18	88	0	52	25	2	0	71	1.00
48454819--48454851	15	2.2	15	89	10	50	36	0	18	45	1.49
48458104--48458151	20	2.4	20	92	0	78	25	0	8	66	1.19
48462219--48462400	43	4.2	43	84	2	213	32	23	16	27	1.96
48468235--48469012	9	86.3	9	69	16	357	34	0	19	45	1.56
48468235--48468902	47	13.1	48	69	24	266	33	0	19	45	1.54
48468266--48468867	102	5.8	103	80	14	625	33	0	20	45	1.54
48468521--48468789	116	2.3	116	90	3	425	33	0	20	46	1.54
48468538--48468902	116	3.1	118	84	6	401	34	0	19	45	1.57
48468235--48468888	265	2.5	265	84	9	845	33	0	20	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48468740--48468889	59	2.6	60	86	7	206	35	1	18	44	1.58
48468929--48469053	18	6.9	18	71	12	94	37	0	15	46	1.51
48469207--48469497	73	4.0	73	93	3	503	47	7	10	34	1.65
48469207--48469497	148	2.0	145	93	2	483	47	7	10	34	1.65
48469635--48469783	66	2.3	66	86	2	210	51	11	2	34	1.52
48471860--48471907	24	2.0	24	84	8	62	54	0	37	8	1.31
48473510--48473806	124	2.4	124	85	3	375	32	19	15	31	1.94
48474009--48474112	14	7.5	14	76	10	97	40	36	0	23	1.55
48474009--48474109	21	4.9	20	77	10	96	40	35	0	23	1.55
48474038--48474214	7	25.3	7	73	8	92	42	33	0	22	1.58
48474038--48474113	27	2.8	28	85	4	109	43	36	0	19	1.52
48474157--48474228	14	5.1	14	76	5	56	36	43	0	20	1.53
48474169--48474239	21	3.5	20	67	5	52	32	46	0	21	1.51
48474210--48474235	7	3.7	7	100	0	52	15	57	0	26	1.38
48474038--48474314	105	2.6	104	82	5	297	42	33	0	22	1.59
48474298--48474322	7	3.6	7	100	0	50	72	12	0	16	1.13
48478019--48478063	23	2.0	23	82	8	56	64	4	2	28	1.25
48478010--48478063	25	2.3	23	83	6	63	66	3	1	27	1.19
48478169--48478209	20	2.0	20	85	0	55	58	2	2	36	1.24
48493969--48494071	51	2.0	51	98	0	197	33	11	16	37	1.85
48515197--48515249	27	2.0	26	88	3	79	26	11	26	35	1.90
48523385--48523454	16	4.4	16	90	0	104	38	2	32	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48523436--48523524	44	2.0	46	86	4	128	28	5	28	38	1.79
48523714--48523743	15	1.9	16	93	6	53	50	6	0	43	1.28
48523953--48523982	15	1.9	16	93	6	53	50	6	0	43	1.28
48523681--48524110	119	3.6	118	95	1	761	51	3	1	43	1.30
48523868--48524030	38	4.2	38	64	18	100	52	4	1	41	1.31
48524022--48524380	91	4.0	91	92	3	575	46	4	2	46	1.36
48524203--48524256	15	3.9	15	72	16	53	51	1	0	46	1.11
48524022--48524380	179	2.0	179	91	3	578	46	4	2	46	1.36
48528072--48528132	21	2.9	21	82	0	68	22	34	27	14	1.94
48531648--48531679	17	1.9	16	93	6	55	75	3	0	21	0.95
48537959--48538063	21	5.0	21	68	4	77	17	20	19	43	1.88
48537927--48538083	42	3.7	42	82	4	181	17	19	18	44	1.87
48540275--48540313	20	1.9	21	89	5	62	69	0	10	20	1.17
48548352--48548385	6	5.7	6	92	0	59	17	55	14	11	1.68
48552233--48552285	27	2.0	27	96	0	97	15	3	11	69	1.31
48553848--48554004	44	3.4	44	85	11	224	29	22	16	30	1.96
48553885--48553997	51	2.2	51	92	3	183	29	23	14	32	1.94
48553791--48554004	95	2.3	94	92	0	347	29	24	15	30	1.96
48554464--48554555	43	2.1	43	82	7	107	29	34	16	19	1.94
48554477--48554641	86	1.9	86	81	7	201	25	33	16	24	1.96
48554502--48554645	43	3.3	43	81	7	177	26	32	15	25	1.96
48559914--48559956	19	2.2	20	87	4	61	13	2	4	79	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48560331--48560369	14	2.8	14	88	11	62	30	43	0	25	1.55
48560946--48561096	82	1.8	82	91	0	248	44	25	1	28	1.65
48561120--48561166	7	6.7	7	80	0	58	31	48	0	19	1.49
48561172--48561201	14	2.1	14	93	0	51	40	36	3	20	1.69
48561521--48561700	89	2.0	89	94	0	315	47	6	4	42	1.48
48561724--48561958	41	5.7	41	85	2	301	32	24	20	22	1.98
48561995--48562131	40	3.4	40	82	2	150	20	19	22	37	1.95
48562604--48562687	39	2.2	39	93	2	152	27	21	9	41	1.84
48572860--48573019	45	3.6	45	97	0	302	26	9	47	16	1.77
48578995--48579054	23	2.5	24	74	15	61	58	0	0	41	0.98
48578994--48579051	17	3.3	18	78	9	57	58	0	0	41	0.98
48579988--48580019	3	10.7	3	100	0	64	65	0	0	34	0.93
48580256--48580309	26	2.1	26	100	0	108	57	0	0	42	0.98
48582715--48582739	4	6.2	4	100	0	50	24	0	0	76	0.80
48595990--48596143	73	2.1	73	91	0	254	22	24	30	22	1.99
48596415--48596530	54	2.1	54	93	0	205	23	25	28	22	1.99
48597574--48597688	24	4.7	24	72	2	95	33	20	29	15	1.94
48597622--48597711	25	3.7	23	73	10	81	34	20	27	17	1.95
48599556--48599655	42	2.4	42	93	0	164	36	11	28	25	1.90
48603046--48603112	27	2.4	27	82	7	82	76	1	19	2	1.00
48603639--48603674	18	2.0	18	94	0	63	27	8	16	47	1.75
48611063--48611110	20	2.4	20	85	0	69	60	4	0	35	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48621837--48622066	43	5.3	43	86	2	300	27	31	18	22	1.97
48621837--48622075	129	1.9	129	88	1	363	28	31	17	22	1.96
48622991--48623419	68	6.3	67	75	11	406	39	24	6	30	1.79
48622991--48623420	137	3.1	137	91	2	670	39	23	6	30	1.79
48622991--48623420	23	18.9	23	72	12	275	39	23	6	30	1.79
48626230--48626279	26	1.9	26	100	0	100	24	0	6	70	1.10
48626593--48626634	14	3.0	14	83	10	59	38	40	0	21	1.53
48626595--48626649	28	2.0	28	88	0	83	40	38	0	21	1.54
48626603--48626642	20	2.0	20	85	9	55	40	40	0	20	1.52
48626629--48626663	15	2.4	14	86	9	52	40	37	0	22	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196